Wall clock time and date at job start Sun Mar 29 2020 22:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30172 * 126.80244 * 2 1 4 4 O 1.20924 * 111.61017 * 180.02562 * 3 2 1 5 5 C 1.34047 * 111.55980 * 359.76483 * 4 3 2 6 6 C 1.50700 * 126.77345 * 180.28522 * 5 4 3 7 7 C 1.35451 * 106.44806 * 0.38088 * 5 4 3 8 8 C 1.50694 * 128.00740 * 179.91006 * 7 5 4 9 9 N 1.46905 * 109.47033 * 269.67973 * 8 7 5 10 10 C 1.46900 * 110.99850 * 293.95020 * 9 8 7 11 11 C 1.46906 * 111.00051 * 170.00053 * 9 8 7 12 12 C 1.52993 * 109.47378 * 189.99991 * 11 9 8 13 13 C 1.50696 * 109.47429 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99822 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00339 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00355 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99771 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47174 * 89.99890 * 17 15 13 19 19 H 1.48501 * 109.47062 * 209.99841 * 17 15 13 20 20 H 1.48503 * 109.47284 * 329.99536 * 17 15 13 21 21 H 1.08996 * 109.46845 * 269.97007 * 1 2 3 22 22 H 1.09006 * 109.46885 * 29.96853 * 1 2 3 23 23 H 1.08992 * 109.47046 * 149.96990 * 1 2 3 24 24 H 1.09001 * 109.47340 * 270.10976 * 6 5 4 25 25 H 1.09000 * 109.47379 * 30.11316 * 6 5 4 26 26 H 1.09005 * 109.46956 * 150.11868 * 6 5 4 27 27 H 1.08997 * 109.47644 * 149.68094 * 8 7 5 28 28 H 1.09000 * 109.47199 * 29.67371 * 8 7 5 29 29 H 1.08996 * 109.47030 * 296.04770 * 10 9 8 30 30 H 1.08999 * 109.46702 * 56.04909 * 10 9 8 31 31 H 1.08996 * 109.46890 * 176.04778 * 10 9 8 32 32 H 1.09004 * 109.47040 * 309.99779 * 11 9 8 33 33 H 1.09000 * 109.47033 * 69.99731 * 11 9 8 34 34 H 1.09004 * 109.46862 * 299.99897 * 12 11 9 35 35 H 1.09004 * 109.46998 * 59.99419 * 12 11 9 36 36 H 0.97000 * 119.99584 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6068 0.0042 6 6 4.9022 -1.3695 0.0112 7 6 2.3540 -1.1320 -0.0007 8 6 1.9591 -2.5863 -0.0003 9 7 1.8296 -3.0589 -1.3852 10 6 0.7111 -2.3933 -2.0662 11 6 1.6797 -4.5196 -1.4312 12 6 1.7980 -4.9991 -2.8792 13 6 1.6449 -6.4976 -2.9263 14 1 1.4793 -7.0523 -2.0146 15 6 1.7152 -7.1602 -4.1334 16 7 1.5820 -8.4679 -4.1745 17 14 2.0008 -6.2005 -5.7104 18 1 3.4595 -6.0931 -5.9671 19 1 1.3494 -6.9052 -6.8436 20 1 1.4207 -4.8403 -5.5741 21 1 -0.3633 -0.0005 1.0276 22 1 -0.3633 0.8903 -0.5134 23 1 -0.3633 -0.8897 -0.5143 24 1 5.2202 -1.5549 -1.0148 25 1 5.6637 -0.7851 0.5276 26 1 4.7627 -2.3203 0.5257 27 1 1.0054 -2.7038 0.5143 28 1 2.7232 -3.1702 0.5128 29 1 -0.2248 -2.6642 -1.5775 30 1 0.8471 -1.3130 -2.0173 31 1 0.6810 -2.7089 -3.1090 32 1 2.4611 -4.9841 -0.8297 33 1 0.7029 -4.7973 -1.0351 34 1 1.0166 -4.5346 -3.4807 35 1 2.7749 -4.7214 -3.2753 36 1 1.6318 -8.9340 -5.0237 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051705770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:55 Heat of formation + Delta-G solvation = 54.044106 kcal Electronic energy + Delta-G solvation = -17068.847252 eV Core-core repulsion = 14363.281000 eV Total energy + Delta-G solvation = -2705.566251 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.86820 -37.74628 -34.78861 -33.58385 -32.81215 -30.33099 -29.02881 -28.11941 -26.85037 -25.67611 -22.98383 -21.03800 -20.01595 -19.89025 -17.66609 -16.93465 -16.82091 -15.14603 -14.99795 -14.63472 -14.21866 -13.74776 -13.52682 -13.48296 -13.09257 -12.94398 -12.69321 -12.57269 -12.50293 -12.07739 -11.79875 -11.34157 -11.17775 -10.95044 -10.85368 -10.16418 -9.99655 -9.77597 -9.72489 -9.23140 -9.07699 -8.54585 -7.92217 -6.06308 -4.04594 1.50975 2.20563 3.15050 3.31313 3.38563 3.43110 4.17369 4.41807 4.44591 4.49559 4.87806 5.02937 5.24016 5.28370 5.36136 5.40154 5.41417 5.51733 5.63170 5.66581 5.70575 5.77095 5.91798 5.95176 6.09511 6.16727 6.27051 6.31957 6.72006 7.10492 7.25438 7.52178 7.56465 7.82180 8.31244 8.50609 8.97603 9.56333 11.07014 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035082 B = 0.005364 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.938621 B = 5218.273781 C = 5390.151094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.025 3.975 3 N -0.374 5.374 4 O 0.090 5.910 5 C -0.017 4.017 6 C -0.070 4.070 7 C -0.188 4.188 8 C 0.130 3.870 9 N -0.540 5.540 10 C 0.021 3.979 11 C 0.071 3.929 12 C -0.007 4.007 13 C -0.522 4.522 14 H 0.071 0.929 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.266 1.266 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.023 0.977 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.016 0.984 35 H 0.020 0.980 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 15.472 9.010 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 N -0.081 5.081 4 O 0.026 5.974 5 C -0.081 4.081 6 C -0.128 4.128 7 C -0.193 4.193 8 C 0.002 3.998 9 N -0.264 5.264 10 C -0.127 4.127 11 C -0.056 4.056 12 C -0.045 4.045 13 C -0.560 4.560 14 H 0.089 0.911 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.190 1.190 21 H 0.096 0.904 22 H 0.094 0.906 23 H 0.104 0.896 24 H 0.110 0.890 25 H 0.096 0.904 26 H 0.110 0.890 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.038 0.962 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.099 16.748 8.641 18.962 hybrid contribution -0.727 -0.627 -0.515 1.090 sum 1.372 16.120 8.127 18.105 Atomic orbital electron populations 1.20330 0.86352 1.04089 1.03261 1.23416 0.98723 0.88714 1.02607 1.73797 0.89375 1.24008 1.20913 1.84766 1.21566 1.22785 1.68245 1.24257 0.98440 0.83370 1.01993 1.20327 0.89566 0.98323 1.04539 1.20888 0.91572 0.97280 1.09520 1.20272 1.00352 0.88051 0.91126 1.62115 1.43403 1.07689 1.13222 1.22526 0.91206 0.98626 1.00324 1.22172 0.99318 0.83321 1.00768 1.19567 0.96900 0.96530 0.91478 1.21073 1.49688 0.90151 0.95111 0.91113 1.24985 0.94547 0.94703 0.99055 1.69913 1.50711 1.07414 1.26225 0.86763 0.78748 0.80587 0.83084 1.20220 1.21491 1.19028 0.90397 0.90630 0.89583 0.88956 0.90363 0.88968 0.93892 0.89634 0.95842 0.92208 0.90727 0.91369 0.95375 0.96599 0.96151 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.93 36.01 0.36 -0.53 16 2 C 0.02 0.33 6.41 -82.10 -0.53 -0.19 16 3 N -0.37 -5.55 12.07 33.42 0.40 -5.14 16 4 O 0.09 1.26 11.20 17.16 0.19 1.45 16 5 C -0.02 -0.21 7.49 -35.30 -0.26 -0.47 16 6 C -0.07 -0.65 10.30 36.01 0.37 -0.28 16 7 C -0.19 -2.54 5.11 -104.43 -0.53 -3.08 16 8 C 0.13 1.78 5.29 -4.98 -0.03 1.75 16 9 N -0.54 -8.96 4.75 -244.37 -1.16 -10.12 16 10 C 0.02 0.33 7.93 60.06 0.48 0.81 16 11 C 0.07 1.37 4.90 -3.82 -0.02 1.35 16 12 C -0.01 -0.17 3.96 -27.89 -0.11 -0.28 16 13 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 14 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 17 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 21 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.09 0.91 5.50 -51.93 -0.29 0.62 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.78 7.44 -51.93 -0.39 0.40 16 27 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 28 H 0.09 1.07 7.23 -51.93 -0.38 0.70 16 29 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 30 H 0.06 0.87 5.32 -51.93 -0.28 0.59 16 31 H 0.07 1.28 6.47 -51.93 -0.34 0.95 16 32 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 33 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.02 0.38 5.61 -51.93 -0.29 0.09 16 35 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 LS Contribution 292.39 15.07 4.41 4.41 Total: -1.00 -31.55 292.39 -6.03 -37.58 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -5.27 Total: -4.33 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -0.71 Total: -14.02 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.02 Total: -42.16 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.19 Total: 1.45 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.55 -6.03 -37.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051705770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.619 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds