Wall clock time and date at job start Sun Mar 29 2020 22:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30172 * 126.80244 * 2 1 4 4 O 1.20924 * 111.61017 * 180.02562 * 3 2 1 5 5 C 1.34047 * 111.55980 * 359.76483 * 4 3 2 6 6 C 1.50700 * 126.77345 * 180.28522 * 5 4 3 7 7 C 1.35451 * 106.44806 * 0.38088 * 5 4 3 8 8 C 1.50694 * 128.00740 * 179.91006 * 7 5 4 9 9 N 1.46905 * 109.47033 * 269.67973 * 8 7 5 10 10 C 1.46900 * 110.99850 * 293.95020 * 9 8 7 11 11 C 1.46906 * 111.00051 * 170.00053 * 9 8 7 12 12 C 1.52993 * 109.47378 * 189.99991 * 11 9 8 13 13 C 1.50696 * 109.47429 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99822 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00339 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00355 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99771 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47174 * 89.99890 * 17 15 13 19 19 H 1.48501 * 109.47062 * 209.99841 * 17 15 13 20 20 H 1.48503 * 109.47284 * 329.99536 * 17 15 13 21 21 H 1.08996 * 109.46845 * 269.97007 * 1 2 3 22 22 H 1.09006 * 109.46885 * 29.96853 * 1 2 3 23 23 H 1.08992 * 109.47046 * 149.96990 * 1 2 3 24 24 H 1.09001 * 109.47340 * 270.10976 * 6 5 4 25 25 H 1.09000 * 109.47379 * 30.11316 * 6 5 4 26 26 H 1.09005 * 109.46956 * 150.11868 * 6 5 4 27 27 H 1.08997 * 109.47644 * 149.68094 * 8 7 5 28 28 H 1.09000 * 109.47199 * 29.67371 * 8 7 5 29 29 H 1.08996 * 109.47030 * 296.04770 * 10 9 8 30 30 H 1.08999 * 109.46702 * 56.04909 * 10 9 8 31 31 H 1.08996 * 109.46890 * 176.04778 * 10 9 8 32 32 H 1.09004 * 109.47040 * 309.99779 * 11 9 8 33 33 H 1.09000 * 109.47033 * 69.99731 * 11 9 8 34 34 H 1.09004 * 109.46862 * 299.99897 * 12 11 9 35 35 H 1.09004 * 109.46998 * 59.99419 * 12 11 9 36 36 H 0.97000 * 119.99584 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6068 0.0042 6 6 4.9022 -1.3695 0.0112 7 6 2.3540 -1.1320 -0.0007 8 6 1.9591 -2.5863 -0.0003 9 7 1.8296 -3.0589 -1.3852 10 6 0.7111 -2.3933 -2.0662 11 6 1.6797 -4.5196 -1.4312 12 6 1.7980 -4.9991 -2.8792 13 6 1.6449 -6.4976 -2.9263 14 1 1.4793 -7.0523 -2.0146 15 6 1.7152 -7.1602 -4.1334 16 7 1.5820 -8.4679 -4.1745 17 14 2.0008 -6.2005 -5.7104 18 1 3.4595 -6.0931 -5.9671 19 1 1.3494 -6.9052 -6.8436 20 1 1.4207 -4.8403 -5.5741 21 1 -0.3633 -0.0005 1.0276 22 1 -0.3633 0.8903 -0.5134 23 1 -0.3633 -0.8897 -0.5143 24 1 5.2202 -1.5549 -1.0148 25 1 5.6637 -0.7851 0.5276 26 1 4.7627 -2.3203 0.5257 27 1 1.0054 -2.7038 0.5143 28 1 2.7232 -3.1702 0.5128 29 1 -0.2248 -2.6642 -1.5775 30 1 0.8471 -1.3130 -2.0173 31 1 0.6810 -2.7089 -3.1090 32 1 2.4611 -4.9841 -0.8297 33 1 0.7029 -4.7973 -1.0351 34 1 1.0166 -4.5346 -3.4807 35 1 2.7749 -4.7214 -3.2753 36 1 1.6318 -8.9340 -5.0237 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051705770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:55 Heat of formation + Delta-G solvation = 33.144543 kcal Electronic energy + Delta-G solvation = -17069.753525 eV Core-core repulsion = 14363.281000 eV Total energy + Delta-G solvation = -2706.472524 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.88205 -39.02872 -36.01215 -34.92795 -34.38256 -32.10783 -29.98249 -29.13101 -27.96284 -27.21896 -24.54205 -22.24962 -21.52737 -20.94687 -19.02749 -18.64862 -17.90140 -16.55430 -16.40199 -16.07582 -15.64935 -15.03612 -14.74196 -14.52423 -14.32510 -14.26352 -13.84258 -13.62811 -13.53234 -13.35102 -13.02664 -12.87871 -12.65300 -12.44884 -11.95073 -11.89061 -11.71448 -11.59930 -11.31763 -10.84108 -10.73732 -10.10492 -9.22298 -8.28171 -6.31529 0.52328 1.19149 1.37663 1.38629 1.50698 2.21982 2.37332 3.08023 3.14627 3.24711 3.55930 3.90355 4.04165 4.26840 4.37501 4.40928 4.51941 4.56675 4.60554 4.68935 4.70584 4.76232 4.79170 4.85486 4.96757 5.00051 5.05938 5.18818 5.30498 5.32186 5.49999 5.64705 6.11002 6.18352 6.32366 6.76668 7.31730 7.33393 8.88400 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035082 B = 0.005364 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.938621 B = 5218.273781 C = 5390.151094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.022 3.978 3 N -0.399 5.399 4 O 0.079 5.921 5 C -0.010 4.010 6 C -0.071 4.071 7 C -0.207 4.207 8 C 0.135 3.865 9 N -0.546 5.546 10 C 0.023 3.977 11 C 0.084 3.916 12 C -0.001 4.001 13 C -0.529 4.529 14 H 0.036 0.964 15 C 0.009 3.991 16 N -0.950 5.950 17 Si 0.948 3.052 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.251 1.251 21 H 0.094 0.906 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.017 0.983 35 H 0.019 0.981 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 17.037 8.994 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 N -0.109 5.109 4 O 0.019 5.981 5 C -0.074 4.074 6 C -0.128 4.128 7 C -0.212 4.212 8 C 0.007 3.993 9 N -0.270 5.270 10 C -0.125 4.125 11 C -0.043 4.043 12 C -0.039 4.039 13 C -0.568 4.568 14 H 0.054 0.946 15 C -0.188 4.188 16 N -0.591 5.591 17 Si 0.772 3.228 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.174 1.174 21 H 0.112 0.888 22 H 0.100 0.900 23 H 0.106 0.894 24 H 0.112 0.888 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.035 0.965 35 H 0.038 0.962 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.487 18.335 8.643 20.422 hybrid contribution -0.839 -1.135 -0.419 1.472 sum 1.648 17.199 8.225 19.136 Atomic orbital electron populations 1.20430 0.84702 1.04461 1.04451 1.23864 0.99916 0.88472 1.01476 1.73793 0.89812 1.24841 1.22469 1.84742 1.21414 1.23471 1.68513 1.24856 0.99533 0.82993 1.00005 1.20506 0.88630 0.98659 1.05022 1.20920 0.92072 0.97067 1.11116 1.20265 1.01318 0.88279 0.89389 1.62008 1.43884 1.05759 1.15383 1.22509 0.91514 0.99125 0.99321 1.21851 0.99229 0.85371 0.97896 1.19448 0.96619 0.93420 0.94432 1.21418 1.48864 0.92579 0.93906 0.94559 1.25907 0.94394 0.95584 1.02925 1.70056 1.52379 1.09336 1.27342 0.85696 0.79111 0.79623 0.78417 1.19247 1.21116 1.17422 0.88781 0.90022 0.89352 0.88849 0.88078 0.88009 0.92959 0.88437 0.94730 0.91088 0.92407 0.91102 0.95829 0.96505 0.96233 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 9.93 71.24 0.71 -0.90 16 2 C 0.02 0.55 6.41 43.58 0.28 0.83 16 3 N -0.40 -11.32 12.07 -49.54 -0.60 -11.92 16 4 O 0.08 2.10 11.20 71.57 0.80 2.91 16 5 C -0.01 -0.23 7.49 25.04 0.19 -0.04 16 6 C -0.07 -1.13 10.30 71.24 0.73 -0.39 16 7 C -0.21 -5.16 5.11 -19.74 -0.10 -5.26 16 8 C 0.14 3.37 5.29 85.55 0.45 3.82 16 9 N -0.55 -16.98 4.75 -927.06 -4.41 -21.39 16 10 C 0.02 0.68 7.93 127.69 1.01 1.70 16 11 C 0.08 3.13 4.90 86.30 0.42 3.55 16 12 C 0.00 -0.07 3.96 29.84 0.12 0.05 16 13 C -0.53 -29.95 9.66 25.60 0.25 -29.71 16 14 H 0.04 2.24 7.99 -2.91 -0.02 2.21 16 15 C 0.01 0.51 5.47 84.65 0.46 0.98 16 16 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 17 Si 0.95 44.34 27.47 68.60 1.88 46.23 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 20 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 21 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.09 1.65 5.50 -2.39 -0.01 1.64 16 24 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.44 7.44 -2.38 -0.02 1.42 16 27 H 0.05 1.22 8.12 -2.39 -0.02 1.21 16 28 H 0.10 2.19 7.23 -2.39 -0.02 2.17 16 29 H 0.03 0.93 7.57 -2.39 -0.02 0.91 16 30 H 0.07 1.92 5.32 -2.39 -0.01 1.90 16 31 H 0.06 1.88 6.47 -2.39 -0.02 1.86 16 32 H 0.07 2.59 7.93 -2.38 -0.02 2.57 16 33 H 0.02 0.89 8.12 -2.39 -0.02 0.87 16 34 H 0.02 0.77 5.61 -2.38 -0.01 0.76 16 35 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -67.33 292.39 3.51 -63.82 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.01 Total: 4.53 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 4.52 Total: -25.38 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -4.71 Total: -92.10 kcal Atomic # 8 Polarization: 2.10 SS G_CDS: 0.80 Total: 2.91 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.23 kcal Total: -67.33 3.51 -63.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051705770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.961 kcal (2) G-P(sol) polarization free energy of solvation -67.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds