Wall clock time and date at job start Sun Mar 29 2020 22:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47274 * 2 1 4 4 N 1.46500 * 109.47007 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99781 * 265.69331 * 4 3 2 6 6 H 1.07995 * 119.99781 * 146.17394 * 5 4 3 7 7 C 1.38804 * 119.99957 * 326.16764 * 5 4 3 8 8 N 1.31614 * 120.00377 * 337.72786 * 7 5 4 9 9 Si 1.86804 * 119.99874 * 157.71847 * 7 5 4 10 10 H 1.48503 * 109.46806 * 60.00254 * 9 7 5 11 11 H 1.48501 * 109.47321 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47423 * 300.00580 * 9 7 5 13 13 C 1.46496 * 120.00359 * 85.69545 * 4 3 2 14 14 C 1.50710 * 109.47357 * 89.99367 * 13 4 3 15 15 C 1.41383 * 128.00025 * 90.00061 * 14 13 4 16 16 C 1.50694 * 126.80433 * 359.94642 * 15 14 13 17 17 N 1.30175 * 106.39287 * 179.97438 * 15 14 13 18 18 O 1.20920 * 111.60500 * 359.97438 * 17 15 14 19 19 C 1.34045 * 111.56749 * 359.76474 * 18 17 15 20 20 C 1.50705 * 126.77898 * 180.28642 * 19 18 17 21 21 H 1.08999 * 109.47018 * 180.02562 * 1 2 3 22 22 H 1.08991 * 109.47024 * 300.00108 * 1 2 3 23 23 H 1.09003 * 109.46786 * 60.00594 * 1 2 3 24 24 H 1.09003 * 109.47251 * 239.99584 * 2 1 3 25 25 H 1.09005 * 109.47196 * 120.00049 * 2 1 3 26 26 H 1.08991 * 109.47183 * 59.99989 * 3 2 1 27 27 H 1.08998 * 109.47074 * 299.99762 * 3 2 1 28 28 H 0.97005 * 120.00199 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47546 * 209.99902 * 13 4 3 30 30 H 1.09003 * 109.47235 * 330.00052 * 13 4 3 31 31 H 1.09000 * 109.47393 * 90.00243 * 16 15 14 32 32 H 1.09005 * 109.47209 * 209.99748 * 16 15 14 33 33 H 1.08999 * 109.47658 * 330.00068 * 16 15 14 34 34 H 1.08998 * 109.47057 * 270.11441 * 20 19 18 35 35 H 1.08997 * 109.46947 * 30.11054 * 20 19 18 36 36 H 1.09005 * 109.46966 * 150.10970 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.5316 1.1835 6 1 5.1320 1.0184 1.3020 7 6 3.6710 2.2818 2.2301 8 7 2.7979 3.2361 1.9866 9 14 4.2127 1.9369 3.9843 10 1 5.6807 2.1310 4.0962 11 1 3.5179 2.8680 4.9091 12 1 3.8699 0.5370 4.3421 13 6 4.2381 1.3470 -1.2641 14 6 4.4895 2.7311 -1.8048 15 6 5.5993 3.5725 -1.5612 16 6 6.7919 3.2650 -0.6929 17 7 5.3864 4.6657 -2.2350 18 8 4.3399 4.6198 -2.8390 19 6 3.7078 3.4543 -2.6418 20 6 2.3869 3.0329 -3.2323 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 2.4354 3.7601 2.7181 29 1 5.1904 0.8444 -1.0951 30 1 3.6493 0.7775 -1.9833 31 1 7.5648 2.7854 -1.2937 32 1 7.1824 4.1909 -0.2707 33 1 6.4915 2.5961 0.1136 34 1 1.5784 3.3357 -2.5669 35 1 2.2551 3.5087 -4.2041 36 1 2.3719 1.9497 -3.3530 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060565457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:54 Heat of formation + Delta-G solvation = 61.695662 kcal Electronic energy + Delta-G solvation = -17860.486148 eV Core-core repulsion = 15155.251693 eV Total energy + Delta-G solvation = -2705.234455 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.03168 -36.51009 -34.11342 -32.85128 -32.40426 -30.83801 -27.98686 -27.62477 -25.73779 -25.53653 -22.38851 -20.90238 -19.76351 -19.28201 -16.89691 -16.63576 -16.16414 -14.89734 -14.18504 -13.97663 -13.69835 -13.28555 -13.17023 -12.89325 -12.68212 -12.42092 -12.29390 -11.91575 -11.60253 -11.53351 -11.29343 -10.94915 -10.80593 -10.74805 -10.42045 -10.20060 -9.97824 -9.92449 -9.53387 -8.99143 -8.50998 -8.30775 -6.67973 -5.82451 -3.35707 2.27641 3.09264 3.34130 3.40966 3.42825 3.91438 4.45853 5.02684 5.23503 5.27947 5.50795 5.62536 5.78518 5.81772 5.83621 5.91240 5.94909 6.08910 6.15826 6.19764 6.32828 6.42958 6.49094 6.55587 6.59792 6.70307 6.77354 6.85394 6.89963 7.02803 7.25861 7.72968 7.78389 8.45794 9.09373 9.14092 9.76936 10.33163 11.17797 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.011231 C = 0.007970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.554351 B = 2492.610627 C = 3512.484908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.142 3.858 4 N -0.571 5.571 5 C -0.258 4.258 6 H 0.063 0.937 7 C 0.013 3.987 8 N -0.882 5.882 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.212 3.788 14 C -0.178 4.178 15 C 0.036 3.964 16 C -0.072 4.072 17 N -0.387 5.387 18 O 0.079 5.921 19 C -0.059 4.059 20 C -0.060 4.060 21 H 0.039 0.961 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.022 0.978 28 H 0.255 0.745 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.875 -3.765 -7.258 8.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.016 3.984 4 N -0.290 5.290 5 C -0.388 4.388 6 H 0.081 0.919 7 C -0.188 4.188 8 N -0.524 5.524 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.084 3.916 14 C -0.185 4.185 15 C -0.123 4.123 16 C -0.130 4.130 17 N -0.095 5.095 18 O 0.015 5.985 19 C -0.123 4.123 20 C -0.118 4.118 21 H 0.058 0.942 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.289 -2.514 -7.283 7.710 hybrid contribution -0.068 -0.588 1.289 1.419 sum -0.357 -3.102 -5.994 6.759 Atomic orbital electron populations 1.21690 0.97518 0.99939 1.01109 1.22095 0.93683 1.01629 1.00609 1.21075 0.83079 0.92158 1.02047 1.44029 1.01076 1.83679 1.00224 1.19014 1.06198 1.24303 0.89263 0.91901 1.25104 0.99714 0.94904 0.99088 1.69985 1.32697 1.18792 1.30926 0.86496 0.78369 0.77786 0.84916 1.20708 1.21685 1.20849 1.19374 0.96430 0.87335 0.88445 1.22340 0.93933 1.03291 0.98941 1.23306 0.99084 0.90556 0.99307 1.20132 0.92243 1.02573 0.98018 1.73668 1.01226 1.22670 1.11985 1.84648 1.25080 1.34392 1.54348 1.23973 0.98652 0.86948 1.02758 1.20161 0.89813 1.01671 1.00140 0.94154 0.93120 0.93622 0.94144 0.92494 0.88353 0.95972 0.93505 0.92570 0.93316 0.91631 0.91730 0.88621 0.90013 0.91175 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.14 -2.64 6.26 -26.73 -0.17 -2.81 16 3 C 0.14 3.15 5.25 -4.04 -0.02 3.13 16 4 N -0.57 -13.32 2.44 -174.62 -0.43 -13.75 16 5 C -0.26 -6.63 8.85 -15.06 -0.13 -6.77 16 6 H 0.06 1.60 7.92 -52.49 -0.42 1.18 16 7 C 0.01 0.33 4.93 -17.44 -0.09 0.25 16 8 N -0.88 -24.84 11.32 55.49 0.63 -24.21 16 9 Si 0.89 21.06 29.61 -169.99 -5.03 16.03 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.21 4.26 6.01 -5.19 -0.03 4.23 16 14 C -0.18 -3.70 5.90 -104.42 -0.62 -4.32 16 15 C 0.04 0.78 7.33 -82.10 -0.60 0.17 16 16 C -0.07 -1.34 10.39 36.00 0.37 -0.97 16 17 N -0.39 -8.47 12.07 33.42 0.40 -8.07 16 18 O 0.08 1.63 11.20 17.16 0.19 1.83 16 19 C -0.06 -1.14 7.49 -35.30 -0.26 -1.40 16 20 C -0.06 -0.88 9.56 36.01 0.34 -0.53 16 21 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.10 2.53 5.32 -51.93 -0.28 2.26 16 27 H 0.02 0.46 6.67 -51.93 -0.35 0.12 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 30 H 0.05 0.87 7.37 -51.93 -0.38 0.49 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.10 1.91 7.48 -51.93 -0.39 1.52 16 34 H 0.08 1.23 7.52 -51.93 -0.39 0.84 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.10 7.44 -51.93 -0.39 0.71 16 LS Contribution 301.03 15.07 4.54 4.54 Total: -1.00 -29.39 301.03 -6.05 -35.44 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.52 Total: -0.87 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -0.83 Total: -10.93 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.61 Total: -46.03 kcal Atomic # 8 Polarization: 1.63 SS G_CDS: 0.19 Total: 1.83 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.39 -6.05 -35.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060565457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.136 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds