Wall clock time and date at job start Sun Mar 29 2020 22:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47274 * 2 1 4 4 N 1.46500 * 109.47007 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99781 * 265.69331 * 4 3 2 6 6 H 1.07995 * 119.99781 * 146.17394 * 5 4 3 7 7 C 1.38804 * 119.99957 * 326.16764 * 5 4 3 8 8 N 1.31614 * 120.00377 * 337.72786 * 7 5 4 9 9 Si 1.86804 * 119.99874 * 157.71847 * 7 5 4 10 10 H 1.48503 * 109.46806 * 60.00254 * 9 7 5 11 11 H 1.48501 * 109.47321 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47423 * 300.00580 * 9 7 5 13 13 C 1.46496 * 120.00359 * 85.69545 * 4 3 2 14 14 C 1.50710 * 109.47357 * 89.99367 * 13 4 3 15 15 C 1.41383 * 128.00025 * 90.00061 * 14 13 4 16 16 C 1.50694 * 126.80433 * 359.94642 * 15 14 13 17 17 N 1.30175 * 106.39287 * 179.97438 * 15 14 13 18 18 O 1.20920 * 111.60500 * 359.97438 * 17 15 14 19 19 C 1.34045 * 111.56749 * 359.76474 * 18 17 15 20 20 C 1.50705 * 126.77898 * 180.28642 * 19 18 17 21 21 H 1.08999 * 109.47018 * 180.02562 * 1 2 3 22 22 H 1.08991 * 109.47024 * 300.00108 * 1 2 3 23 23 H 1.09003 * 109.46786 * 60.00594 * 1 2 3 24 24 H 1.09003 * 109.47251 * 239.99584 * 2 1 3 25 25 H 1.09005 * 109.47196 * 120.00049 * 2 1 3 26 26 H 1.08991 * 109.47183 * 59.99989 * 3 2 1 27 27 H 1.08998 * 109.47074 * 299.99762 * 3 2 1 28 28 H 0.97005 * 120.00199 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47546 * 209.99902 * 13 4 3 30 30 H 1.09003 * 109.47235 * 330.00052 * 13 4 3 31 31 H 1.09000 * 109.47393 * 90.00243 * 16 15 14 32 32 H 1.09005 * 109.47209 * 209.99748 * 16 15 14 33 33 H 1.08999 * 109.47658 * 330.00068 * 16 15 14 34 34 H 1.08998 * 109.47057 * 270.11441 * 20 19 18 35 35 H 1.08997 * 109.46947 * 30.11054 * 20 19 18 36 36 H 1.09005 * 109.46966 * 150.10970 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.5316 1.1835 6 1 5.1320 1.0184 1.3020 7 6 3.6710 2.2818 2.2301 8 7 2.7979 3.2361 1.9866 9 14 4.2127 1.9369 3.9843 10 1 5.6807 2.1310 4.0962 11 1 3.5179 2.8680 4.9091 12 1 3.8699 0.5370 4.3421 13 6 4.2381 1.3470 -1.2641 14 6 4.4895 2.7311 -1.8048 15 6 5.5993 3.5725 -1.5612 16 6 6.7919 3.2650 -0.6929 17 7 5.3864 4.6657 -2.2350 18 8 4.3399 4.6198 -2.8390 19 6 3.7078 3.4543 -2.6418 20 6 2.3869 3.0329 -3.2323 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 2.4354 3.7601 2.7181 29 1 5.1904 0.8444 -1.0951 30 1 3.6493 0.7775 -1.9833 31 1 7.5648 2.7854 -1.2937 32 1 7.1824 4.1909 -0.2707 33 1 6.4915 2.5961 0.1136 34 1 1.5784 3.3357 -2.5669 35 1 2.2551 3.5087 -4.2041 36 1 2.3719 1.9497 -3.3530 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060565457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:53 Heat of formation + Delta-G solvation = 45.901419 kcal Electronic energy + Delta-G solvation = -17861.171038 eV Core-core repulsion = 15155.251693 eV Total energy + Delta-G solvation = -2705.919345 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.62985 -38.22255 -35.70731 -34.35875 -34.08216 -32.56959 -29.53476 -29.07441 -27.36696 -27.21550 -24.09698 -22.46179 -21.42874 -20.82702 -18.60798 -18.41717 -17.74984 -16.75254 -15.89191 -15.61652 -15.24559 -14.85689 -14.67913 -14.23178 -14.17415 -13.83302 -13.69303 -13.36447 -13.22675 -13.08924 -12.87377 -12.66786 -12.53804 -12.35069 -12.08921 -11.86960 -11.66003 -11.57171 -11.21243 -10.59148 -10.45016 -9.86173 -8.57912 -7.79613 -5.34959 0.72932 1.44728 1.46545 1.51093 1.55509 2.45906 2.53634 3.29283 3.47879 3.80722 3.84333 4.16497 4.39993 4.41993 4.54550 4.56815 4.69754 4.71374 4.75026 4.78280 4.92024 4.98236 5.02316 5.06039 5.16297 5.20500 5.29912 5.36302 5.44239 5.50741 5.63997 5.72860 5.99681 6.49658 7.20832 7.51793 7.91259 8.40878 9.16795 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.011231 C = 0.007970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.554351 B = 2492.610627 C = 3512.484908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.142 3.858 4 N -0.585 5.585 5 C -0.252 4.252 6 H 0.063 0.937 7 C -0.036 4.036 8 N -0.915 5.915 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.300 1.300 12 H -0.278 1.278 13 C 0.215 3.785 14 C -0.206 4.206 15 C 0.018 3.982 16 C -0.068 4.068 17 N -0.410 5.410 18 O 0.072 5.928 19 C -0.049 4.049 20 C -0.060 4.060 21 H 0.063 0.937 22 H 0.036 0.964 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.034 0.966 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.246 0.754 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.258 -5.045 -8.595 10.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C 0.017 3.983 4 N -0.304 5.304 5 C -0.383 4.383 6 H 0.080 0.920 7 C -0.233 4.233 8 N -0.559 5.559 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.227 1.227 12 H -0.204 1.204 13 C 0.089 3.911 14 C -0.212 4.212 15 C -0.140 4.140 16 C -0.125 4.125 17 N -0.121 5.121 18 O 0.010 5.990 19 C -0.114 4.114 20 C -0.117 4.117 21 H 0.082 0.918 22 H 0.056 0.944 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.666 -3.814 -8.640 9.468 hybrid contribution 0.061 -0.206 1.594 1.609 sum -0.605 -4.020 -7.046 8.134 Atomic orbital electron populations 1.21637 0.95184 1.01540 1.01300 1.21926 0.95684 0.98995 1.00311 1.21016 0.82645 0.93979 1.00680 1.44209 1.01668 1.83791 1.00737 1.19241 1.05802 1.22844 0.90386 0.91960 1.25658 1.00500 0.95234 1.01884 1.70129 1.34571 1.20200 1.31028 0.85672 0.77989 0.77326 0.81501 1.20195 1.22702 1.20436 1.19431 0.96705 0.87398 0.87613 1.22477 0.94575 1.03761 1.00421 1.23825 1.00135 0.90670 0.99417 1.20140 0.92300 1.02425 0.97633 1.73653 1.02093 1.23250 1.13059 1.84614 1.24989 1.35077 1.54311 1.24800 0.99408 0.85756 1.01388 1.20392 0.86836 1.03164 1.01308 0.91821 0.94447 0.91970 0.92342 0.94755 0.92035 0.95026 0.94445 0.92305 0.90571 0.88552 0.91709 0.90295 0.90301 0.88028 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 9.91 71.98 0.71 -3.34 16 2 C -0.13 -4.62 6.26 30.59 0.19 -4.43 16 3 C 0.14 6.17 5.25 86.38 0.45 6.62 16 4 N -0.58 -26.77 2.44 -706.36 -1.72 -28.49 16 5 C -0.25 -12.94 8.85 84.03 0.74 -12.19 16 6 H 0.06 3.15 7.92 -2.91 -0.02 3.12 16 7 C -0.04 -1.91 4.93 84.86 0.42 -1.50 16 8 N -0.91 -52.65 11.32 21.65 0.25 -52.41 16 9 Si 0.95 43.84 29.61 68.60 2.03 45.87 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 C 0.22 8.28 6.01 85.64 0.51 8.80 16 14 C -0.21 -8.27 5.90 -19.73 -0.12 -8.39 16 15 C 0.02 0.75 7.33 43.58 0.32 1.07 16 16 C -0.07 -2.47 10.39 71.23 0.74 -1.73 16 17 N -0.41 -17.78 12.07 -49.56 -0.60 -18.38 16 18 O 0.07 2.91 11.20 71.59 0.80 3.71 16 19 C -0.05 -1.80 7.49 25.04 0.19 -1.62 16 20 C -0.06 -1.54 9.56 71.24 0.68 -0.86 16 21 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 25 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.06 3.20 5.32 -2.39 -0.01 3.19 16 27 H 0.03 1.28 6.67 -2.39 -0.02 1.26 16 28 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 29 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 30 H 0.08 2.48 7.37 -2.39 -0.02 2.46 16 31 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.08 3.14 7.48 -2.39 -0.02 3.12 16 34 H 0.08 2.15 7.52 -2.39 -0.02 2.13 16 35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.10 2.28 7.44 -2.38 -0.02 2.26 16 Total: -1.00 -63.49 301.03 6.66 -56.83 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.05 Total: 10.43 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 4.85 Total: -17.57 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -2.07 Total: -99.27 kcal Atomic # 8 Polarization: 2.91 SS G_CDS: 0.80 Total: 3.71 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -63.49 6.66 -56.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060565457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.736 kcal (2) G-P(sol) polarization free energy of solvation -63.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds