Wall clock time and date at job start Sun Mar 29 2020 22:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34476 * 126.16406 * 2 1 4 4 C 1.30257 * 108.69813 * 179.82670 * 3 2 1 5 5 C 1.50699 * 125.62061 * 180.14821 * 4 3 2 6 6 N 1.46894 * 109.47334 * 90.34149 * 5 4 3 7 7 C 1.46904 * 111.00229 * 293.95618 * 6 5 4 8 8 C 1.46900 * 111.00368 * 170.00220 * 6 5 4 9 9 H 1.09007 * 109.46820 * 310.00059 * 8 6 5 10 10 C 1.53004 * 109.46934 * 69.99786 * 8 6 5 11 11 C 1.50698 * 109.47189 * 190.00129 * 8 6 5 12 12 H 1.07993 * 120.00137 * 359.97438 * 11 8 6 13 13 C 1.37878 * 119.99850 * 179.97438 * 11 8 6 14 14 N 1.31512 * 119.99959 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 119.99947 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46766 * 90.00237 * 15 13 11 17 17 H 1.48500 * 109.47156 * 210.00038 * 15 13 11 18 18 H 1.48491 * 109.47233 * 330.00013 * 15 13 11 19 19 O 1.33969 * 108.76055 * 0.44172 * 4 3 2 20 20 C 1.34332 * 126.16201 * 180.31489 * 2 1 3 21 21 C 1.50698 * 126.44830 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.46953 * 269.68512 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.68110 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.68740 * 1 2 3 25 25 H 1.08998 * 109.47172 * 210.34707 * 5 4 3 26 26 H 1.08999 * 109.46993 * 330.34049 * 5 4 3 27 27 H 1.09001 * 109.46780 * 59.99455 * 7 6 5 28 28 H 1.08994 * 109.47467 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.47012 * 300.00355 * 7 6 5 30 30 H 1.08996 * 109.46796 * 60.00699 * 10 8 6 31 31 H 1.09000 * 109.46703 * 180.02562 * 10 8 6 32 32 H 1.08998 * 109.47043 * 300.00117 * 10 8 6 33 33 H 0.97006 * 119.99986 * 180.02562 * 14 13 11 34 34 H 1.08992 * 109.47616 * 89.99349 * 21 20 2 35 35 H 1.08995 * 109.46981 * 210.00439 * 21 20 2 36 36 H 1.09003 * 109.46630 * 329.99461 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 0.0037 5 6 4.7480 1.5998 0.0082 6 7 5.1400 1.8864 1.3946 7 6 4.1081 2.6748 2.0813 8 6 6.4415 2.5660 1.4440 9 1 7.1618 2.0158 0.8385 10 6 6.2956 3.9874 0.8970 11 6 6.9242 2.6236 2.8704 12 1 6.3242 2.1984 3.6612 13 6 8.1321 3.2193 3.1658 14 7 8.8631 3.7367 2.2027 15 14 8.7302 3.2914 4.9340 16 1 9.5365 2.0808 5.2335 17 1 9.5672 4.5032 5.1244 18 1 7.5626 3.3475 5.8496 19 8 3.5734 -0.6446 -0.0036 20 6 2.2997 -1.0845 -0.0060 21 6 1.8493 -2.5226 -0.0144 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3634 0.8928 -0.5089 24 1 -0.3633 -0.8872 -0.5187 25 1 5.5728 1.1093 -0.5087 26 1 4.5038 2.5324 -0.5005 27 1 3.1715 2.1174 2.0910 28 1 4.4235 2.8725 3.1057 29 1 3.9633 3.6193 1.5566 30 1 5.5753 4.5375 1.5025 31 1 7.2614 4.4915 0.9332 32 1 5.9464 3.9457 -0.1347 33 1 9.7131 4.1554 2.4105 34 1 1.7410 -2.8634 -1.0440 35 1 2.5898 -3.1382 0.4962 36 1 0.8913 -2.6062 0.4987 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095724.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:31 Heat of formation + Delta-G solvation = 22.951674 kcal Electronic energy + Delta-G solvation = -17154.912490 eV Core-core repulsion = 14447.997969 eV Total energy + Delta-G solvation = -2706.914520 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.04325 -37.30956 -34.91208 -33.36723 -32.39047 -29.52089 -28.94189 -27.66443 -25.23842 -25.15281 -23.31052 -21.39167 -20.33268 -19.27183 -16.63362 -16.44451 -15.95836 -15.11688 -14.47230 -14.31378 -14.08864 -13.52337 -13.29383 -13.25879 -13.05436 -12.64458 -12.44076 -12.33104 -11.99295 -11.54319 -11.18868 -11.05558 -10.79909 -10.76706 -10.54957 -10.51517 -10.19567 -10.05244 -9.91176 -8.95842 -8.39754 -8.29213 -7.28974 -6.02480 -4.06021 1.68745 2.87191 2.97646 3.31862 3.38029 3.42026 4.25348 4.42722 4.83766 4.94264 5.10599 5.16693 5.30054 5.32618 5.50075 5.57291 5.58971 5.74613 5.83641 5.93965 6.22273 6.26136 6.30972 6.42405 6.56914 6.67894 6.81050 6.90615 7.05615 7.36733 7.66941 7.79902 8.01696 8.09841 8.31479 8.50701 8.99125 9.58787 11.04727 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041018 B = 0.005352 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.466188 B = 5230.114060 C = 5375.035033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.019 4.019 3 N -0.486 5.486 4 C 0.226 3.774 5 C 0.142 3.858 6 N -0.531 5.531 7 C 0.035 3.965 8 C 0.212 3.788 9 H 0.042 0.958 10 C -0.174 4.174 11 C -0.498 4.498 12 H 0.063 0.937 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.899 3.101 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 O -0.193 6.193 20 C -0.067 4.067 21 C -0.062 4.062 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.023 0.977 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.008 0.992 33 H 0.261 0.739 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.929 -8.044 -5.228 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.139 4.139 3 N -0.216 5.216 4 C 0.018 3.982 5 C 0.013 3.987 6 N -0.256 5.256 7 C -0.114 4.114 8 C 0.107 3.893 9 H 0.060 0.940 10 C -0.233 4.233 11 C -0.537 4.537 12 H 0.081 0.919 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.727 3.273 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 O -0.080 6.080 20 C -0.121 4.121 21 C -0.119 4.119 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.109 0.891 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.841 -7.794 -5.008 15.834 hybrid contribution 0.551 0.206 0.517 0.783 sum -12.289 -7.588 -4.491 15.125 Atomic orbital electron populations 1.20049 0.87017 1.02824 1.02504 1.21474 0.97670 0.88064 1.06730 1.70383 1.00635 1.31065 1.19544 1.26451 0.95267 0.78751 0.97697 1.20472 0.89567 0.94149 0.94548 1.62373 1.05036 1.48428 1.09752 1.22268 0.93843 0.95222 1.00056 1.19382 0.83354 0.88949 0.97651 0.93991 1.22433 1.03382 1.01879 0.95624 1.21058 1.03978 1.36455 0.92200 0.91894 1.24913 0.96533 0.95386 0.97400 1.69880 1.13045 1.38938 1.31520 0.86487 0.78702 0.77394 0.84759 1.20680 1.21341 1.19945 1.84419 1.29612 1.24446 1.69494 1.23075 0.81371 0.98002 1.09630 1.20173 1.01675 0.86898 1.03172 0.91034 0.90846 0.91160 0.88617 0.90990 0.93504 0.90718 0.95857 0.94683 0.89099 0.97318 0.92950 0.90339 0.90451 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.05 36.01 0.36 -0.35 16 2 C -0.02 -0.30 7.11 -82.81 -0.59 -0.89 16 3 N -0.49 -8.91 10.57 -7.35 -0.08 -8.99 16 4 C 0.23 4.24 6.97 -12.95 -0.09 4.15 16 5 C 0.14 2.72 5.16 -4.98 -0.03 2.69 16 6 N -0.53 -11.78 4.69 -237.73 -1.12 -12.89 16 7 C 0.03 0.73 8.49 60.07 0.51 1.24 16 8 C 0.21 5.29 2.31 -68.86 -0.16 5.13 16 9 H 0.04 1.13 7.93 -51.92 -0.41 0.71 16 10 C -0.17 -4.14 8.22 37.16 0.31 -3.84 16 11 C -0.50 -13.60 7.91 -34.44 -0.27 -13.87 16 12 H 0.06 1.74 7.12 -52.49 -0.37 1.37 16 13 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 14 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 15 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 O -0.19 -3.48 10.78 5.35 0.06 -3.43 16 20 C -0.07 -1.00 7.39 -35.69 -0.26 -1.26 16 21 C -0.06 -0.59 10.04 36.00 0.36 -0.23 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 0.56 7.79 -51.93 -0.40 0.16 16 25 H 0.10 1.73 7.93 -51.93 -0.41 1.31 16 26 H 0.07 1.34 7.06 -51.93 -0.37 0.97 16 27 H 0.05 0.95 6.73 -51.93 -0.35 0.60 16 28 H 0.07 1.65 6.76 -51.93 -0.35 1.30 16 29 H 0.02 0.48 6.46 -51.93 -0.34 0.14 16 30 H 0.03 0.81 6.42 -51.93 -0.33 0.48 16 31 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 32 H 0.01 0.17 6.91 -51.93 -0.36 -0.19 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.63 7.79 -51.93 -0.40 0.23 16 LS Contribution 293.01 15.07 4.42 4.42 Total: -1.00 -30.25 293.01 -6.31 -36.56 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.24 Total: -1.73 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 0.05 Total: -5.72 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.57 Total: -46.41 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: 0.06 Total: -3.43 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.25 -6.31 -36.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095724.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.513 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds