Wall clock time and date at job start Sun Mar 29 2020 22:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34476 * 126.16406 * 2 1 4 4 C 1.30257 * 108.69813 * 179.82670 * 3 2 1 5 5 C 1.50699 * 125.62061 * 180.14821 * 4 3 2 6 6 N 1.46894 * 109.47334 * 90.34149 * 5 4 3 7 7 C 1.46904 * 111.00229 * 293.95618 * 6 5 4 8 8 C 1.46900 * 111.00368 * 170.00220 * 6 5 4 9 9 H 1.09007 * 109.46820 * 310.00059 * 8 6 5 10 10 C 1.53004 * 109.46934 * 69.99786 * 8 6 5 11 11 C 1.50698 * 109.47189 * 190.00129 * 8 6 5 12 12 H 1.07993 * 120.00137 * 359.97438 * 11 8 6 13 13 C 1.37878 * 119.99850 * 179.97438 * 11 8 6 14 14 N 1.31512 * 119.99959 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 119.99947 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46766 * 90.00237 * 15 13 11 17 17 H 1.48500 * 109.47156 * 210.00038 * 15 13 11 18 18 H 1.48491 * 109.47233 * 330.00013 * 15 13 11 19 19 O 1.33969 * 108.76055 * 0.44172 * 4 3 2 20 20 C 1.34332 * 126.16201 * 180.31489 * 2 1 3 21 21 C 1.50698 * 126.44830 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.46953 * 269.68512 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.68110 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.68740 * 1 2 3 25 25 H 1.08998 * 109.47172 * 210.34707 * 5 4 3 26 26 H 1.08999 * 109.46993 * 330.34049 * 5 4 3 27 27 H 1.09001 * 109.46780 * 59.99455 * 7 6 5 28 28 H 1.08994 * 109.47467 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.47012 * 300.00355 * 7 6 5 30 30 H 1.08996 * 109.46796 * 60.00699 * 10 8 6 31 31 H 1.09000 * 109.46703 * 180.02562 * 10 8 6 32 32 H 1.08998 * 109.47043 * 300.00117 * 10 8 6 33 33 H 0.97006 * 119.99986 * 180.02562 * 14 13 11 34 34 H 1.08992 * 109.47616 * 89.99349 * 21 20 2 35 35 H 1.08995 * 109.46981 * 210.00439 * 21 20 2 36 36 H 1.09003 * 109.46630 * 329.99461 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 0.0037 5 6 4.7480 1.5998 0.0082 6 7 5.1400 1.8864 1.3946 7 6 4.1081 2.6748 2.0813 8 6 6.4415 2.5660 1.4440 9 1 7.1618 2.0158 0.8385 10 6 6.2956 3.9874 0.8970 11 6 6.9242 2.6236 2.8704 12 1 6.3242 2.1984 3.6612 13 6 8.1321 3.2193 3.1658 14 7 8.8631 3.7367 2.2027 15 14 8.7302 3.2914 4.9340 16 1 9.5365 2.0808 5.2335 17 1 9.5672 4.5032 5.1244 18 1 7.5626 3.3475 5.8496 19 8 3.5734 -0.6446 -0.0036 20 6 2.2997 -1.0845 -0.0060 21 6 1.8493 -2.5226 -0.0144 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3634 0.8928 -0.5089 24 1 -0.3633 -0.8872 -0.5187 25 1 5.5728 1.1093 -0.5087 26 1 4.5038 2.5324 -0.5005 27 1 3.1715 2.1174 2.0910 28 1 4.4235 2.8725 3.1057 29 1 3.9633 3.6193 1.5566 30 1 5.5753 4.5375 1.5025 31 1 7.2614 4.4915 0.9332 32 1 5.9464 3.9457 -0.1347 33 1 9.7131 4.1554 2.4105 34 1 1.7410 -2.8634 -1.0440 35 1 2.5898 -3.1382 0.4962 36 1 0.8913 -2.6062 0.4987 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095724.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:30 Heat of formation + Delta-G solvation = 1.261445 kcal Electronic energy + Delta-G solvation = -17155.853049 eV Core-core repulsion = 14447.997969 eV Total energy + Delta-G solvation = -2707.855079 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.30849 -39.08915 -36.14537 -35.06802 -33.85122 -31.13155 -29.97313 -29.27845 -27.29157 -26.58204 -24.76694 -22.74887 -21.68793 -21.01911 -18.32731 -17.97820 -17.43054 -16.88911 -16.10612 -15.85666 -15.58009 -14.87700 -14.61997 -14.42503 -14.13940 -13.91697 -13.77475 -13.43752 -13.14549 -13.02543 -12.96954 -12.83679 -12.64707 -12.56012 -12.33840 -12.07017 -11.87349 -11.84150 -11.46663 -10.98236 -10.49117 -9.46933 -9.03723 -8.11192 -6.21802 0.44372 1.43764 1.44419 1.54410 1.61352 1.76587 2.43804 3.00187 3.18197 3.44545 3.81277 3.93196 4.16190 4.33091 4.43778 4.51995 4.62867 4.67769 4.69772 4.76348 4.79799 4.85519 4.90555 4.99907 5.07977 5.09397 5.19135 5.20611 5.46136 5.49173 5.68111 5.74903 6.11475 6.37268 6.57001 6.80159 6.88368 7.46715 8.94888 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041018 B = 0.005352 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.466188 B = 5230.114060 C = 5375.035033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.041 4.041 3 N -0.500 5.500 4 C 0.197 3.803 5 C 0.148 3.852 6 N -0.542 5.542 7 C 0.048 3.952 8 C 0.217 3.783 9 H 0.018 0.982 10 C -0.160 4.160 11 C -0.516 4.516 12 H 0.053 0.947 13 C 0.015 3.985 14 N -0.918 5.918 15 Si 0.959 3.041 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.271 1.271 19 O -0.212 6.212 20 C -0.064 4.064 21 C -0.062 4.062 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.026 0.974 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.263 0.737 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.541 -9.219 -5.080 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.161 4.161 3 N -0.231 5.231 4 C -0.010 4.010 5 C 0.019 3.981 6 N -0.267 5.267 7 C -0.100 4.100 8 C 0.111 3.889 9 H 0.036 0.964 10 C -0.220 4.220 11 C -0.554 4.554 12 H 0.071 0.929 13 C -0.184 4.184 14 N -0.557 5.557 15 Si 0.785 3.215 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.196 1.196 19 O -0.099 6.099 20 C -0.117 4.117 21 C -0.118 4.118 22 H 0.100 0.900 23 H 0.089 0.911 24 H 0.121 0.879 25 H 0.117 0.883 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.465 -8.981 -4.867 17.708 hybrid contribution 0.959 0.479 0.417 1.150 sum -13.506 -8.503 -4.450 16.568 Atomic orbital electron populations 1.20207 0.83850 1.04353 1.03614 1.22230 0.99646 0.87318 1.06907 1.70343 1.00860 1.32719 1.19196 1.26111 0.95202 0.79197 1.00496 1.20350 0.90324 0.94740 0.92687 1.62219 1.04301 1.48185 1.12031 1.22113 0.93608 0.95276 0.99049 1.19146 0.84275 0.89318 0.96171 0.96449 1.22232 1.01979 1.00858 0.96883 1.21287 1.04357 1.36672 0.93133 0.92878 1.25632 0.96624 0.95006 1.01113 1.69992 1.13275 1.39275 1.33198 0.85535 0.78168 0.77485 0.80292 1.20297 1.20758 1.19600 1.84403 1.31619 1.24156 1.69700 1.24155 0.80037 1.00298 1.07194 1.20483 1.02856 0.83391 1.05113 0.90030 0.91097 0.87888 0.88259 0.90566 0.92869 0.92216 0.95581 0.94724 0.91517 0.95182 0.92831 0.88017 0.90165 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.17 10.05 71.24 0.72 -0.45 16 2 C -0.04 -1.18 7.11 41.26 0.29 -0.89 16 3 N -0.50 -17.96 10.57 -291.97 -3.09 -21.05 16 4 C 0.20 7.36 6.97 88.34 0.62 7.98 16 5 C 0.15 5.72 5.16 85.56 0.44 6.16 16 6 N -0.54 -24.37 4.69 -906.04 -4.25 -28.62 16 7 C 0.05 2.02 8.49 127.69 1.08 3.11 16 8 C 0.22 11.04 2.31 44.17 0.10 11.14 16 9 H 0.02 0.97 7.93 -2.38 -0.02 0.95 16 10 C -0.16 -7.70 8.22 71.98 0.59 -7.11 16 11 C -0.52 -28.58 7.91 25.60 0.20 -28.38 16 12 H 0.05 2.98 7.12 -2.91 -0.02 2.96 16 13 C 0.02 0.83 5.30 84.66 0.45 1.28 16 14 N -0.92 -52.15 11.32 21.45 0.24 -51.91 16 15 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 O -0.21 -7.54 10.78 -3.76 -0.04 -7.58 16 20 C -0.06 -1.77 7.39 24.79 0.18 -1.58 16 21 C -0.06 -0.96 10.04 71.24 0.72 -0.24 16 22 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.10 1.20 7.79 -2.39 -0.02 1.18 16 25 H 0.10 3.67 7.93 -2.39 -0.02 3.65 16 26 H 0.08 2.84 7.06 -2.39 -0.02 2.82 16 27 H 0.05 2.16 6.73 -2.39 -0.02 2.14 16 28 H 0.06 2.67 6.76 -2.39 -0.02 2.65 16 29 H 0.03 1.07 6.46 -2.38 -0.02 1.05 16 30 H 0.03 1.62 6.42 -2.39 -0.02 1.60 16 31 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 32 H 0.03 1.26 6.91 -2.39 -0.02 1.25 16 33 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.12 1.15 7.79 -2.39 -0.02 1.13 16 Total: -1.00 -65.32 293.01 1.35 -63.97 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.07 Total: 8.32 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 5.39 Total: -8.99 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -7.10 Total: -101.58 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.04 Total: -7.58 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -65.32 1.35 -63.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095724.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.231 kcal (2) G-P(sol) polarization free energy of solvation -65.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds