Wall clock time and date at job start Sun Mar 29 2020 22:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34473 * 126.16487 * 2 1 4 4 C 1.30257 * 108.70227 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.62056 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.46772 * 89.99914 * 5 4 3 7 7 C 1.46896 * 110.99695 * 66.05103 * 6 5 4 8 8 C 1.46902 * 110.99584 * 189.99676 * 6 5 4 9 9 H 1.09001 * 109.46682 * 55.00652 * 8 6 5 10 10 C 1.52994 * 109.47517 * 295.00249 * 8 6 5 11 11 C 1.50703 * 109.46585 * 175.00036 * 8 6 5 12 12 H 1.07993 * 120.00147 * 0.02562 * 11 8 6 13 13 C 1.37882 * 119.99656 * 179.97438 * 11 8 6 14 14 N 1.31513 * 120.00299 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 119.99861 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47490 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47199 * 120.00419 * 15 13 11 18 18 H 1.48501 * 109.47254 * 240.00321 * 15 13 11 19 19 O 1.33965 * 108.75920 * 359.97438 * 4 3 2 20 20 C 1.34326 * 126.16334 * 179.68365 * 2 1 3 21 21 C 1.50694 * 126.44554 * 359.97438 * 20 2 1 22 22 H 1.09001 * 109.46953 * 90.02759 * 1 2 3 23 23 H 1.09000 * 109.47318 * 210.02356 * 1 2 3 24 24 H 1.09000 * 109.47161 * 330.02987 * 1 2 3 25 25 H 1.08999 * 109.47031 * 209.99938 * 5 4 3 26 26 H 1.08998 * 109.46952 * 330.00286 * 5 4 3 27 27 H 1.08998 * 109.47472 * 59.99656 * 7 6 5 28 28 H 1.09006 * 109.46771 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.47056 * 299.98921 * 7 6 5 30 30 H 1.08998 * 109.47073 * 300.00226 * 10 8 6 31 31 H 1.09000 * 109.46837 * 60.00091 * 10 8 6 32 32 H 1.08999 * 109.47387 * 180.02562 * 10 8 6 33 33 H 0.96997 * 120.00569 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.47018 * 90.00120 * 21 20 2 35 35 H 1.08997 * 109.47255 * 209.99722 * 21 20 2 36 36 H 1.08999 * 109.47287 * 330.00359 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7480 1.5999 0.0002 6 7 5.1391 1.8950 1.3851 7 6 5.6124 0.6835 2.0679 8 6 6.1545 2.9556 1.4307 9 1 5.7856 3.8346 0.9021 10 6 7.4393 2.4609 0.7635 11 6 6.4403 3.3159 2.8659 12 1 5.9201 2.8075 3.6641 13 6 7.3668 4.2938 3.1598 14 7 8.0007 4.9126 2.1877 15 14 7.7217 4.7399 4.9386 16 1 6.8835 3.9041 5.8353 17 1 9.1565 4.4958 5.2334 18 1 7.4076 6.1741 5.1615 19 8 3.5735 -0.6446 0.0015 20 6 2.2997 -1.0844 0.0060 21 6 1.8493 -2.5225 0.0145 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 5.5732 1.1063 -0.5131 26 1 4.5040 2.5294 -0.5143 27 1 6.4766 0.2822 1.5386 28 1 5.8950 0.9302 3.0914 29 1 4.8162 -0.0608 2.0807 30 1 7.8080 1.5819 1.2921 31 1 7.2324 2.2003 -0.2745 32 1 8.1928 3.2477 0.7977 33 1 8.6522 5.6008 2.3944 34 1 1.7403 -2.8752 -1.0112 35 1 2.5902 -3.1322 0.5315 36 1 0.8916 -2.6002 0.5290 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:33 Heat of formation + Delta-G solvation = 22.702264 kcal Electronic energy + Delta-G solvation = -17167.348288 eV Core-core repulsion = 14460.422953 eV Total energy + Delta-G solvation = -2706.925336 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.05327 -37.32735 -34.91707 -33.34792 -32.43463 -29.50199 -28.97629 -27.69908 -25.28158 -25.12269 -23.38483 -21.31683 -20.40203 -19.28176 -16.67938 -16.45091 -16.00178 -15.15375 -14.46657 -14.29575 -14.12485 -13.56152 -13.38502 -13.16256 -13.06631 -12.64987 -12.39913 -12.32747 -11.97577 -11.61211 -11.17237 -11.14332 -10.88211 -10.71968 -10.63784 -10.49171 -10.13933 -10.05940 -9.93528 -8.93590 -8.41360 -8.29674 -7.29560 -6.03288 -4.06917 1.67308 2.89355 2.97107 3.30194 3.38174 3.43119 4.27724 4.42244 4.84079 4.95632 5.03609 5.15195 5.28323 5.29602 5.43923 5.58927 5.63256 5.76058 5.83385 5.98516 6.13510 6.22178 6.28531 6.33913 6.58302 6.62892 6.76777 6.84771 7.03258 7.36879 7.65086 7.78047 8.01595 8.11992 8.29894 8.49700 8.98197 9.57970 11.04023 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041809 B = 0.005322 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.543800 B = 5259.971514 C = 5369.477080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.017 4.017 3 N -0.473 5.473 4 C 0.222 3.778 5 C 0.145 3.855 6 N -0.527 5.527 7 C 0.032 3.968 8 C 0.212 3.788 9 H 0.045 0.955 10 C -0.175 4.175 11 C -0.500 4.500 12 H 0.064 0.936 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 O -0.203 6.203 20 C -0.071 4.071 21 C -0.061 4.061 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.110 0.890 27 H 0.022 0.978 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.009 0.991 32 H 0.091 0.909 33 H 0.260 0.740 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 -12.191 -5.178 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.137 4.137 3 N -0.202 5.202 4 C 0.014 3.986 5 C 0.016 3.984 6 N -0.252 5.252 7 C -0.116 4.116 8 C 0.107 3.893 9 H 0.063 0.937 10 C -0.234 4.234 11 C -0.538 4.538 12 H 0.082 0.918 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.726 3.274 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.210 1.210 19 O -0.091 6.091 20 C -0.124 4.124 21 C -0.118 4.118 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.128 0.872 27 H 0.040 0.960 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.028 0.972 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.204 -11.260 -4.949 15.981 hybrid contribution 1.240 -0.683 0.506 1.503 sum -8.964 -11.943 -4.443 15.580 Atomic orbital electron populations 1.20064 0.86982 1.03031 1.02376 1.21525 0.97774 0.88046 1.06354 1.70379 1.00574 1.30783 1.18488 1.26475 0.95668 0.78329 0.98088 1.20501 0.88255 0.95237 0.94387 1.62383 1.43628 1.09107 1.10080 1.22291 0.97061 0.91406 1.00841 1.19384 0.84762 0.87890 0.97313 0.93706 1.22446 1.03638 1.01785 0.95562 1.21110 1.21616 1.19775 0.91306 0.91784 1.24913 0.95893 0.95980 0.97425 1.69884 1.26963 1.25351 1.31097 0.86436 0.77836 0.78304 0.84816 1.19756 1.21168 1.20993 1.84407 1.29850 1.24688 1.70134 1.23034 0.81345 0.97975 1.10040 1.20169 1.01623 0.86853 1.03168 0.91093 0.91149 0.90653 0.92605 0.87226 0.96005 0.90147 0.94294 0.94888 0.97234 0.89003 0.92981 0.90341 0.90654 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.22 36.01 0.37 -0.38 16 2 C -0.02 -0.27 7.11 -82.81 -0.59 -0.86 16 3 N -0.47 -9.05 11.29 -7.36 -0.08 -9.13 16 4 C 0.22 4.19 6.91 -12.95 -0.09 4.10 16 5 C 0.15 2.79 5.03 -4.97 -0.03 2.77 16 6 N -0.53 -11.69 4.73 -237.73 -1.13 -12.81 16 7 C 0.03 0.67 8.60 60.06 0.52 1.18 16 8 C 0.21 5.28 2.34 -68.86 -0.16 5.12 16 9 H 0.05 1.22 8.03 -51.93 -0.42 0.80 16 10 C -0.18 -4.12 8.27 37.15 0.31 -3.81 16 11 C -0.50 -13.60 7.89 -34.44 -0.27 -13.87 16 12 H 0.06 1.77 6.76 -52.49 -0.36 1.41 16 13 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 14 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 15 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 O -0.20 -3.55 10.16 5.35 0.05 -3.50 16 20 C -0.07 -1.04 7.39 -35.69 -0.26 -1.30 16 21 C -0.06 -0.57 10.22 36.00 0.37 -0.20 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.59 7.16 -51.93 -0.37 0.22 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 1.01 6.94 -51.93 -0.36 0.65 16 26 H 0.11 2.06 8.00 -51.93 -0.42 1.64 16 27 H 0.02 0.43 6.51 -51.93 -0.34 0.09 16 28 H 0.08 1.74 6.42 -51.93 -0.33 1.41 16 29 H 0.04 0.75 6.80 -51.93 -0.35 0.40 16 30 H 0.03 0.75 6.47 -51.93 -0.34 0.42 16 31 H 0.01 0.19 6.75 -51.93 -0.35 -0.17 16 32 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.62 7.16 -51.93 -0.37 0.25 16 LS Contribution 291.59 15.07 4.39 4.39 Total: -1.00 -30.48 291.59 -6.23 -36.71 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.14 Total: -1.72 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 0.07 Total: -5.73 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.58 Total: -46.44 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: 0.05 Total: -3.50 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.48 -6.23 -36.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.408 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds