Wall clock time and date at job start Sun Mar 29 2020 22:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34473 * 126.16487 * 2 1 4 4 C 1.30257 * 108.70227 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.62056 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.46772 * 89.99914 * 5 4 3 7 7 C 1.46896 * 110.99695 * 66.05103 * 6 5 4 8 8 C 1.46902 * 110.99584 * 189.99676 * 6 5 4 9 9 H 1.09001 * 109.46682 * 55.00652 * 8 6 5 10 10 C 1.52994 * 109.47517 * 295.00249 * 8 6 5 11 11 C 1.50703 * 109.46585 * 175.00036 * 8 6 5 12 12 H 1.07993 * 120.00147 * 0.02562 * 11 8 6 13 13 C 1.37882 * 119.99656 * 179.97438 * 11 8 6 14 14 N 1.31513 * 120.00299 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 119.99861 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47490 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47199 * 120.00419 * 15 13 11 18 18 H 1.48501 * 109.47254 * 240.00321 * 15 13 11 19 19 O 1.33965 * 108.75920 * 359.97438 * 4 3 2 20 20 C 1.34326 * 126.16334 * 179.68365 * 2 1 3 21 21 C 1.50694 * 126.44554 * 359.97438 * 20 2 1 22 22 H 1.09001 * 109.46953 * 90.02759 * 1 2 3 23 23 H 1.09000 * 109.47318 * 210.02356 * 1 2 3 24 24 H 1.09000 * 109.47161 * 330.02987 * 1 2 3 25 25 H 1.08999 * 109.47031 * 209.99938 * 5 4 3 26 26 H 1.08998 * 109.46952 * 330.00286 * 5 4 3 27 27 H 1.08998 * 109.47472 * 59.99656 * 7 6 5 28 28 H 1.09006 * 109.46771 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.47056 * 299.98921 * 7 6 5 30 30 H 1.08998 * 109.47073 * 300.00226 * 10 8 6 31 31 H 1.09000 * 109.46837 * 60.00091 * 10 8 6 32 32 H 1.08999 * 109.47387 * 180.02562 * 10 8 6 33 33 H 0.96997 * 120.00569 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.47018 * 90.00120 * 21 20 2 35 35 H 1.08997 * 109.47255 * 209.99722 * 21 20 2 36 36 H 1.08999 * 109.47287 * 330.00359 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7480 1.5999 0.0002 6 7 5.1391 1.8950 1.3851 7 6 5.6124 0.6835 2.0679 8 6 6.1545 2.9556 1.4307 9 1 5.7856 3.8346 0.9021 10 6 7.4393 2.4609 0.7635 11 6 6.4403 3.3159 2.8659 12 1 5.9201 2.8075 3.6641 13 6 7.3668 4.2938 3.1598 14 7 8.0007 4.9126 2.1877 15 14 7.7217 4.7399 4.9386 16 1 6.8835 3.9041 5.8353 17 1 9.1565 4.4958 5.2334 18 1 7.4076 6.1741 5.1615 19 8 3.5735 -0.6446 0.0015 20 6 2.2997 -1.0844 0.0060 21 6 1.8493 -2.5225 0.0145 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 5.5732 1.1063 -0.5131 26 1 4.5040 2.5294 -0.5143 27 1 6.4766 0.2822 1.5386 28 1 5.8950 0.9302 3.0914 29 1 4.8162 -0.0608 2.0807 30 1 7.8080 1.5819 1.2921 31 1 7.2324 2.2003 -0.2745 32 1 8.1928 3.2477 0.7977 33 1 8.6522 5.6008 2.3944 34 1 1.7403 -2.8752 -1.0112 35 1 2.5902 -3.1322 0.5315 36 1 0.8916 -2.6002 0.5290 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:32 Heat of formation + Delta-G solvation = 0.402779 kcal Electronic energy + Delta-G solvation = -17168.315267 eV Core-core repulsion = 14460.422953 eV Total energy + Delta-G solvation = -2707.892314 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.31707 -39.09367 -36.15028 -35.04930 -33.88595 -31.12128 -30.04915 -29.24636 -27.26106 -26.60843 -24.81341 -22.69755 -21.75002 -21.01386 -18.32333 -18.02829 -17.45149 -16.92192 -16.09255 -15.85623 -15.53839 -14.92249 -14.66229 -14.41142 -14.14747 -13.88100 -13.76673 -13.47124 -13.10401 -13.05104 -12.96413 -12.85895 -12.69134 -12.56774 -12.35201 -12.05394 -11.96782 -11.78232 -11.43108 -10.94893 -10.50379 -9.47521 -9.01942 -8.11680 -6.22268 0.43551 1.42095 1.44392 1.55504 1.63223 1.73889 2.43589 3.03688 3.17938 3.39628 3.82948 3.91924 4.18000 4.30031 4.37058 4.47961 4.61456 4.64854 4.67456 4.77689 4.80695 4.87897 4.91672 5.00472 5.06670 5.08678 5.13948 5.19888 5.48324 5.49435 5.68101 5.74529 6.10433 6.37638 6.57190 6.83524 6.88365 7.46330 8.94758 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041809 B = 0.005322 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.543800 B = 5259.971514 C = 5369.477080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.044 4.044 3 N -0.500 5.500 4 C 0.196 3.804 5 C 0.152 3.848 6 N -0.542 5.542 7 C 0.043 3.957 8 C 0.217 3.783 9 H 0.015 0.985 10 C -0.161 4.161 11 C -0.516 4.516 12 H 0.055 0.945 13 C 0.015 3.985 14 N -0.918 5.918 15 Si 0.960 3.040 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.281 1.281 19 O -0.213 6.213 20 C -0.062 4.062 21 C -0.061 4.061 22 H 0.087 0.913 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.029 0.971 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.066 0.934 33 H 0.262 0.738 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.855 -14.111 -5.006 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.164 4.164 3 N -0.231 5.231 4 C -0.011 4.011 5 C 0.023 3.977 6 N -0.267 5.267 7 C -0.105 4.105 8 C 0.111 3.889 9 H 0.033 0.967 10 C -0.220 4.220 11 C -0.555 4.555 12 H 0.073 0.927 13 C -0.184 4.184 14 N -0.557 5.557 15 Si 0.785 3.215 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.207 1.207 19 O -0.100 6.100 20 C -0.115 4.115 21 C -0.117 4.117 22 H 0.105 0.895 23 H 0.120 0.880 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.123 0.877 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.290 -13.201 -4.784 18.017 hybrid contribution 1.467 -0.164 0.400 1.529 sum -9.823 -13.365 -4.384 17.156 Atomic orbital electron populations 1.20216 0.84017 1.04109 1.03761 1.22260 0.99715 0.87387 1.06996 1.70334 1.01278 1.32903 1.18598 1.26097 0.95376 0.78995 1.00635 1.20355 0.89112 0.95606 0.92631 1.62215 1.42826 1.09331 1.12340 1.22170 0.97633 0.90900 0.99785 1.19128 0.85832 0.87973 0.95974 0.96726 1.22235 1.02097 1.00787 0.96906 1.21339 1.21773 1.20109 0.92254 0.92712 1.25638 0.95716 0.95877 1.01174 1.69997 1.27283 1.25652 1.32804 0.85480 0.77807 0.77876 0.80287 1.19541 1.20430 1.20736 1.84391 1.31542 1.23952 1.70159 1.24117 0.80040 1.00171 1.07159 1.20491 1.02889 0.83223 1.05120 0.89487 0.87961 0.91671 0.91395 0.87714 0.95263 0.91713 0.93204 0.94626 0.94937 0.91530 0.92837 0.88065 0.89922 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.26 10.22 71.24 0.73 -0.53 16 2 C -0.04 -1.31 7.11 41.26 0.29 -1.01 16 3 N -0.50 -19.07 11.29 -291.98 -3.30 -22.36 16 4 C 0.20 7.36 6.91 88.34 0.61 7.97 16 5 C 0.15 5.88 5.03 85.56 0.43 6.31 16 6 N -0.54 -24.33 4.73 -906.04 -4.29 -28.62 16 7 C 0.04 1.77 8.60 127.69 1.10 2.87 16 8 C 0.22 11.06 2.34 44.17 0.10 11.16 16 9 H 0.01 0.83 8.03 -2.39 -0.02 0.81 16 10 C -0.16 -7.62 8.27 71.98 0.60 -7.03 16 11 C -0.52 -28.56 7.89 25.60 0.20 -28.36 16 12 H 0.05 3.07 6.76 -2.91 -0.02 3.05 16 13 C 0.01 0.82 5.30 84.66 0.45 1.26 16 14 N -0.92 -52.24 11.32 21.45 0.24 -51.99 16 15 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 O -0.21 -7.18 10.16 -3.77 -0.04 -7.22 16 20 C -0.06 -1.68 7.39 24.79 0.18 -1.49 16 21 C -0.06 -0.88 10.22 71.23 0.73 -0.15 16 22 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.10 1.31 7.16 -2.39 -0.02 1.30 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 2.42 6.94 -2.39 -0.02 2.40 16 26 H 0.10 4.07 8.00 -2.39 -0.02 4.05 16 27 H 0.03 1.13 6.51 -2.39 -0.02 1.12 16 28 H 0.06 2.82 6.42 -2.38 -0.02 2.80 16 29 H 0.05 1.90 6.80 -2.39 -0.02 1.88 16 30 H 0.03 1.62 6.47 -2.39 -0.02 1.60 16 31 H 0.03 1.34 6.75 -2.39 -0.02 1.32 16 32 H 0.07 3.51 6.07 -2.39 -0.01 3.50 16 33 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 34 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.11 1.07 7.16 -2.39 -0.02 1.05 16 Total: -1.00 -66.32 291.59 1.14 -65.18 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.07 Total: 8.12 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 5.42 Total: -9.00 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -7.34 Total: -102.98 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.04 Total: -7.22 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.32 1.14 -65.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.581 kcal (2) G-P(sol) polarization free energy of solvation -66.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds