Wall clock time and date at job start Sun Mar 29 2020 22:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30183 * 126.79903 * 2 1 4 4 O 1.20918 * 111.60052 * 180.25329 * 3 2 1 5 5 C 1.34036 * 111.57036 * 359.74315 * 4 3 2 6 6 C 1.50705 * 126.77757 * 180.02562 * 5 4 3 7 7 C 1.35450 * 106.44620 * 0.02562 * 5 4 3 8 8 C 1.50706 * 128.00724 * 179.97438 * 7 5 4 9 9 N 1.46902 * 109.46577 * 90.00084 * 8 7 5 10 10 C 1.46891 * 111.00304 * 293.95012 * 9 8 7 11 11 C 1.46901 * 110.99644 * 169.99988 * 9 8 7 12 12 H 1.08997 * 109.47092 * 60.00167 * 11 9 8 13 13 C 1.53007 * 109.47155 * 299.99959 * 11 9 8 14 14 C 1.50704 * 109.47263 * 180.02562 * 11 9 8 15 15 H 1.08001 * 119.99349 * 359.97438 * 14 11 9 16 16 C 1.37869 * 120.00149 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00061 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00127 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46835 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47214 * 119.99823 * 18 16 14 21 21 H 1.48495 * 109.47482 * 240.00062 * 18 16 14 22 22 H 1.08997 * 109.47118 * 270.16660 * 1 2 3 23 23 H 1.08996 * 109.47505 * 30.17149 * 1 2 3 24 24 H 1.09006 * 109.46878 * 150.16793 * 1 2 3 25 25 H 1.09000 * 109.46873 * 269.99791 * 6 5 4 26 26 H 1.08997 * 109.47383 * 29.99778 * 6 5 4 27 27 H 1.09001 * 109.47314 * 150.00305 * 6 5 4 28 28 H 1.09000 * 109.47318 * 209.99592 * 8 7 5 29 29 H 1.09000 * 109.47161 * 330.00222 * 8 7 5 30 30 H 1.09003 * 109.47237 * 60.00538 * 10 9 8 31 31 H 1.08998 * 109.47394 * 179.97438 * 10 9 8 32 32 H 1.09003 * 109.47554 * 300.00530 * 10 9 8 33 33 H 1.08996 * 109.47058 * 180.02562 * 13 11 9 34 34 H 1.08997 * 109.47291 * 300.00087 * 13 11 9 35 35 H 1.09003 * 109.46595 * 60.00015 * 13 11 9 36 36 H 0.97006 * 120.00179 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6024 -0.6066 -0.0034 6 6 4.9022 -1.3694 -0.0077 7 6 2.3540 -1.1319 0.0028 8 6 1.9591 -2.5864 0.0063 9 7 1.8370 -3.0571 1.3925 10 6 3.1410 -3.0474 2.0686 11 6 1.2278 -4.3929 1.4430 12 1 1.8485 -5.0965 0.8883 13 6 -0.1677 -4.3410 0.8177 14 6 1.1185 -4.8413 2.8776 15 1 1.4672 -4.1983 3.6723 16 6 0.5744 -6.0725 3.1755 17 7 0.1503 -6.8556 2.2077 18 14 0.4396 -6.6286 4.9537 19 1 0.9830 -5.5725 5.8451 20 1 -0.9862 -6.8734 5.2891 21 1 1.2142 -7.8817 5.1406 22 1 -0.3633 0.0030 1.0276 23 1 -0.3634 0.8884 -0.5165 24 1 -0.3633 -0.8915 -0.5113 25 1 5.2111 -1.5550 -1.0365 26 1 5.6682 -0.7849 0.5018 27 1 4.7674 -2.3201 0.5082 28 1 1.0027 -2.7045 -0.5031 29 1 2.7205 -3.1708 -0.5102 30 1 3.5379 -2.0323 2.0780 31 1 3.0218 -3.3999 3.0931 32 1 3.8311 -3.7023 1.5366 33 1 -0.6199 -5.3320 0.8556 34 1 -0.7885 -3.6373 1.3724 35 1 -0.0890 -4.0165 -0.2199 36 1 -0.2329 -7.7218 2.4173 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068482193.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:01 Heat of formation + Delta-G solvation = 61.636145 kcal Electronic energy + Delta-G solvation = -17579.825325 eV Core-core repulsion = 14874.588289 eV Total energy + Delta-G solvation = -2705.237036 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.60993 -37.44096 -34.57861 -33.48623 -32.35626 -29.22341 -28.62867 -28.32546 -26.55175 -24.72598 -23.64862 -21.15145 -19.89357 -19.30404 -17.39387 -16.73451 -16.25208 -15.23013 -14.40029 -14.13457 -14.01763 -13.71386 -13.23462 -13.05184 -12.86537 -12.58172 -12.28223 -12.22643 -11.93514 -11.87526 -11.16505 -11.06145 -10.72843 -10.70415 -10.56524 -10.20250 -10.04589 -9.93506 -9.51769 -8.97362 -8.81135 -8.44439 -7.23084 -6.05359 -4.09846 1.72787 2.52750 3.27037 3.35346 3.37648 3.39788 4.38072 4.49079 4.74247 5.05761 5.14907 5.26575 5.34029 5.45503 5.50085 5.70994 5.76663 5.89190 5.97726 6.00397 6.12421 6.17018 6.22364 6.34763 6.49213 6.73208 6.79710 6.99652 7.09451 7.45954 7.66111 7.79011 8.14535 8.27169 8.53777 8.56638 8.96803 9.55531 11.01450 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034750 B = 0.006452 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.556519 B = 4338.394584 C = 4631.057704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.035 3.965 3 N -0.379 5.379 4 O 0.088 5.912 5 C -0.042 4.042 6 C -0.079 4.079 7 C -0.171 4.171 8 C 0.123 3.877 9 N -0.530 5.530 10 C 0.033 3.967 11 C 0.212 3.788 12 H -0.001 1.001 13 C -0.134 4.134 14 C -0.503 4.503 15 H 0.064 0.936 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.012 0.988 33 H 0.086 0.914 34 H 0.035 0.965 35 H 0.008 0.992 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.328 8.586 -5.268 11.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.123 4.123 3 N -0.087 5.087 4 O 0.024 5.976 5 C -0.106 4.106 6 C -0.136 4.136 7 C -0.175 4.175 8 C -0.006 4.006 9 N -0.255 5.255 10 C -0.115 4.115 11 C 0.107 3.893 12 H 0.017 0.983 13 C -0.192 4.192 14 C -0.542 4.542 15 H 0.082 0.918 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 H 0.101 0.899 23 H 0.087 0.913 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.030 0.970 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.027 0.973 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.717 10.030 -5.034 12.174 hybrid contribution 0.325 -1.713 0.537 1.824 sum 5.043 8.318 -4.497 10.716 Atomic orbital electron populations 1.20118 0.86084 1.02974 1.03681 1.23404 0.98889 0.88408 1.01645 1.73771 0.89349 1.24106 1.21461 1.84725 1.21707 1.22632 1.68523 1.24177 0.98284 0.83676 1.04443 1.20495 0.90127 0.99282 1.03722 1.21081 0.91128 0.98010 1.07315 1.20379 1.00737 0.86760 0.92686 1.62109 1.21950 1.29946 1.11538 1.22371 0.89914 0.98368 1.00868 1.19272 0.91469 0.81886 0.96702 0.98316 1.21873 0.99254 1.03019 0.95074 1.21181 1.40088 1.01179 0.91707 0.91782 1.24921 0.95397 0.96554 0.97321 1.69897 1.41802 1.10325 1.31219 0.86474 0.77746 0.78481 0.84920 1.19756 1.21006 1.21129 0.89865 0.91337 0.89984 0.89950 0.90161 0.88486 0.89415 0.94783 0.93716 0.90346 0.96950 0.89557 0.94556 0.97293 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.39 36.01 0.37 -0.63 16 2 C 0.04 0.59 7.33 -82.10 -0.60 -0.01 16 3 N -0.38 -6.51 12.07 33.42 0.40 -6.11 16 4 O 0.09 1.41 11.20 17.19 0.19 1.60 16 5 C -0.04 -0.62 6.60 -35.30 -0.23 -0.85 16 6 C -0.08 -0.87 9.77 36.01 0.35 -0.52 16 7 C -0.17 -2.85 5.16 -104.42 -0.54 -3.38 16 8 C 0.12 2.19 5.03 -4.97 -0.03 2.17 16 9 N -0.53 -11.08 4.61 -237.72 -1.10 -12.18 16 10 C 0.03 0.63 7.77 60.06 0.47 1.10 16 11 C 0.21 5.17 2.06 -68.86 -0.14 5.02 16 12 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 13 C -0.13 -3.14 8.76 37.16 0.33 -2.82 16 14 C -0.50 -13.41 7.88 -34.44 -0.27 -13.68 16 15 H 0.06 1.72 6.41 -52.49 -0.34 1.38 16 16 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 17 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 18 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.08 1.10 7.65 -51.93 -0.40 0.70 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 1.15 5.14 -51.93 -0.27 0.89 16 28 H 0.09 1.57 5.34 -51.93 -0.28 1.29 16 29 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 30 H 0.04 0.77 5.68 -51.93 -0.29 0.47 16 31 H 0.08 1.63 6.10 -51.93 -0.32 1.31 16 32 H 0.01 0.22 7.27 -51.93 -0.38 -0.16 16 33 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 287.18 15.07 4.33 4.33 Total: -1.00 -29.04 287.18 -5.95 -34.98 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -4.99 Total: -2.22 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -0.39 Total: -12.10 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -0.07 Total: -42.53 kcal Atomic # 8 Polarization: 1.41 SS G_CDS: 0.19 Total: 1.60 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.04 -5.95 -34.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068482193.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.620 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds