Wall clock time and date at job start Sun Mar 29 2020 22:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30183 * 126.79903 * 2 1 4 4 O 1.20918 * 111.60052 * 180.25329 * 3 2 1 5 5 C 1.34036 * 111.57036 * 359.74315 * 4 3 2 6 6 C 1.50705 * 126.77757 * 180.02562 * 5 4 3 7 7 C 1.35450 * 106.44620 * 0.02562 * 5 4 3 8 8 C 1.50706 * 128.00724 * 179.97438 * 7 5 4 9 9 N 1.46902 * 109.46577 * 90.00084 * 8 7 5 10 10 C 1.46891 * 111.00304 * 293.95012 * 9 8 7 11 11 C 1.46901 * 110.99644 * 169.99988 * 9 8 7 12 12 H 1.08997 * 109.47092 * 60.00167 * 11 9 8 13 13 C 1.53007 * 109.47155 * 299.99959 * 11 9 8 14 14 C 1.50704 * 109.47263 * 180.02562 * 11 9 8 15 15 H 1.08001 * 119.99349 * 359.97438 * 14 11 9 16 16 C 1.37869 * 120.00149 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00061 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00127 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46835 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47214 * 119.99823 * 18 16 14 21 21 H 1.48495 * 109.47482 * 240.00062 * 18 16 14 22 22 H 1.08997 * 109.47118 * 270.16660 * 1 2 3 23 23 H 1.08996 * 109.47505 * 30.17149 * 1 2 3 24 24 H 1.09006 * 109.46878 * 150.16793 * 1 2 3 25 25 H 1.09000 * 109.46873 * 269.99791 * 6 5 4 26 26 H 1.08997 * 109.47383 * 29.99778 * 6 5 4 27 27 H 1.09001 * 109.47314 * 150.00305 * 6 5 4 28 28 H 1.09000 * 109.47318 * 209.99592 * 8 7 5 29 29 H 1.09000 * 109.47161 * 330.00222 * 8 7 5 30 30 H 1.09003 * 109.47237 * 60.00538 * 10 9 8 31 31 H 1.08998 * 109.47394 * 179.97438 * 10 9 8 32 32 H 1.09003 * 109.47554 * 300.00530 * 10 9 8 33 33 H 1.08996 * 109.47058 * 180.02562 * 13 11 9 34 34 H 1.08997 * 109.47291 * 300.00087 * 13 11 9 35 35 H 1.09003 * 109.46595 * 60.00015 * 13 11 9 36 36 H 0.97006 * 120.00179 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6024 -0.6066 -0.0034 6 6 4.9022 -1.3694 -0.0077 7 6 2.3540 -1.1319 0.0028 8 6 1.9591 -2.5864 0.0063 9 7 1.8370 -3.0571 1.3925 10 6 3.1410 -3.0474 2.0686 11 6 1.2278 -4.3929 1.4430 12 1 1.8485 -5.0965 0.8883 13 6 -0.1677 -4.3410 0.8177 14 6 1.1185 -4.8413 2.8776 15 1 1.4672 -4.1983 3.6723 16 6 0.5744 -6.0725 3.1755 17 7 0.1503 -6.8556 2.2077 18 14 0.4396 -6.6286 4.9537 19 1 0.9830 -5.5725 5.8451 20 1 -0.9862 -6.8734 5.2891 21 1 1.2142 -7.8817 5.1406 22 1 -0.3633 0.0030 1.0276 23 1 -0.3634 0.8884 -0.5165 24 1 -0.3633 -0.8915 -0.5113 25 1 5.2111 -1.5550 -1.0365 26 1 5.6682 -0.7849 0.5018 27 1 4.7674 -2.3201 0.5082 28 1 1.0027 -2.7045 -0.5031 29 1 2.7205 -3.1708 -0.5102 30 1 3.5379 -2.0323 2.0780 31 1 3.0218 -3.3999 3.0931 32 1 3.8311 -3.7023 1.5366 33 1 -0.6199 -5.3320 0.8556 34 1 -0.7885 -3.6373 1.3724 35 1 -0.0890 -4.0165 -0.2199 36 1 -0.2329 -7.7218 2.4173 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068482193.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:01 Heat of formation + Delta-G solvation = 43.669724 kcal Electronic energy + Delta-G solvation = -17580.604408 eV Core-core repulsion = 14874.588289 eV Total energy + Delta-G solvation = -2706.016118 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.85657 -39.05395 -36.00689 -34.89348 -33.99167 -31.02583 -29.93095 -29.51734 -27.94308 -26.55836 -25.24599 -22.62313 -21.28619 -20.81557 -18.65220 -18.41804 -17.83866 -16.98752 -16.00178 -15.65379 -15.53559 -15.11401 -14.60382 -14.27915 -13.98198 -13.88676 -13.74257 -13.54196 -13.36244 -13.12903 -12.91942 -12.76162 -12.57382 -12.42104 -12.07730 -12.00409 -11.75534 -11.69154 -10.90939 -10.74597 -10.50760 -10.06105 -8.90366 -8.10035 -6.20961 0.52829 1.25444 1.41577 1.44680 1.55260 2.23042 2.43781 3.18772 3.26917 3.53441 3.62127 3.86149 4.16409 4.40678 4.50646 4.60914 4.63666 4.66367 4.71385 4.74163 4.79054 4.85007 4.93362 5.02968 5.06943 5.07013 5.19356 5.29919 5.33086 5.53553 5.74372 5.81487 6.28828 6.40161 6.73035 6.93736 7.34786 7.48242 8.95846 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034750 B = 0.006452 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.556519 B = 4338.394584 C = 4631.057704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.027 3.973 3 N -0.398 5.398 4 O 0.085 5.915 5 C -0.024 4.024 6 C -0.080 4.080 7 C -0.198 4.198 8 C 0.131 3.869 9 N -0.540 5.540 10 C 0.039 3.961 11 C 0.218 3.782 12 H -0.030 1.030 13 C -0.123 4.123 14 C -0.517 4.517 15 H 0.057 0.943 16 C 0.014 3.986 17 N -0.919 5.919 18 Si 0.955 3.045 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.281 1.281 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.021 0.979 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.034 0.966 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.197 9.258 -5.276 12.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 N -0.107 5.107 4 O 0.024 5.976 5 C -0.089 4.089 6 C -0.137 4.137 7 C -0.202 4.202 8 C 0.003 3.997 9 N -0.265 5.265 10 C -0.109 4.109 11 C 0.112 3.888 12 H -0.013 1.013 13 C -0.181 4.181 14 C -0.555 4.555 15 H 0.075 0.925 16 C -0.185 4.185 17 N -0.559 5.559 18 Si 0.782 3.218 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.207 1.207 22 H 0.098 0.902 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.125 0.875 26 H 0.122 0.878 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.604 10.719 -5.047 13.106 hybrid contribution 0.116 -1.879 0.495 1.947 sum 5.719 8.840 -4.551 11.470 Atomic orbital electron populations 1.20188 0.84834 1.04078 1.03728 1.23798 0.99975 0.88356 1.01068 1.73767 0.89771 1.24556 1.22656 1.84709 1.21370 1.23136 1.68414 1.24782 0.99195 0.83265 1.01625 1.20691 0.88834 0.98604 1.05569 1.20980 0.92128 0.97227 1.09879 1.20260 1.00962 0.87650 0.90817 1.62019 1.23041 1.27639 1.13781 1.22317 0.89413 0.99651 0.99527 1.19046 0.91604 0.83023 0.95160 1.01288 1.21689 0.98466 1.01350 0.96602 1.21446 1.39938 1.01353 0.92801 0.92457 1.25634 0.95199 0.96726 1.00909 1.70011 1.42371 1.10593 1.32899 0.85542 0.77653 0.78036 0.80603 1.19421 1.20772 1.20667 0.90240 0.89637 0.89521 0.87485 0.87772 0.89145 0.89688 0.93993 0.91675 0.92462 0.96053 0.92142 0.94979 0.94740 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.91 10.39 71.24 0.74 -1.17 16 2 C 0.03 0.85 7.33 43.57 0.32 1.17 16 3 N -0.40 -13.09 12.07 -49.56 -0.60 -13.69 16 4 O 0.09 2.57 11.20 71.68 0.80 3.37 16 5 C -0.02 -0.67 6.60 25.04 0.17 -0.50 16 6 C -0.08 -1.51 9.77 71.24 0.70 -0.82 16 7 C -0.20 -6.25 5.16 -19.73 -0.10 -6.35 16 8 C 0.13 4.52 5.03 85.56 0.43 4.95 16 9 N -0.54 -22.19 4.61 -906.02 -4.18 -26.38 16 10 C 0.04 1.45 7.77 127.69 0.99 2.44 16 11 C 0.22 10.66 2.06 44.17 0.09 10.76 16 12 H -0.03 -1.64 8.14 -2.39 -0.02 -1.66 16 13 C -0.12 -5.77 8.76 71.98 0.63 -5.14 16 14 C -0.52 -27.71 7.88 25.60 0.20 -27.51 16 15 H 0.06 3.09 6.41 -2.91 -0.02 3.07 16 16 C 0.01 0.76 5.30 84.65 0.45 1.21 16 17 N -0.92 -51.60 11.32 21.44 0.24 -51.36 16 18 Si 0.96 42.98 29.54 68.60 2.03 45.01 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 22 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.09 2.21 7.65 -2.38 -0.02 2.20 16 25 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.09 1.89 5.14 -2.39 -0.01 1.88 16 28 H 0.08 2.94 5.34 -2.39 -0.01 2.92 16 29 H 0.04 1.38 8.06 -2.39 -0.02 1.36 16 30 H 0.06 2.12 5.68 -2.39 -0.01 2.11 16 31 H 0.06 2.35 6.10 -2.39 -0.01 2.34 16 32 H 0.02 0.74 7.27 -2.39 -0.02 0.73 16 33 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 34 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.03 1.39 6.20 -2.39 -0.01 1.37 16 36 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 Total: -1.00 -61.37 287.18 3.98 -57.39 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 1.08 Total: 6.62 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 4.61 Total: -20.96 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -4.54 Total: -91.43 kcal Atomic # 8 Polarization: 2.57 SS G_CDS: 0.80 Total: 3.37 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -61.37 3.98 -57.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068482193.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.057 kcal (2) G-P(sol) polarization free energy of solvation -61.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds