Wall clock time and date at job start Sun Mar 29 2020 22:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47347 * 2 1 4 4 H 1.09003 * 109.47467 * 179.89469 * 3 2 1 5 5 C 1.50704 * 109.46692 * 299.88984 * 3 2 1 6 6 H 1.08003 * 119.99759 * 120.00244 * 5 3 2 7 7 C 1.37882 * 120.00300 * 300.00099 * 5 3 2 8 8 N 1.31516 * 119.99569 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00208 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46980 * 59.99981 * 9 7 5 11 11 H 1.48503 * 109.47208 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47397 * 300.00436 * 9 7 5 13 13 N 1.46902 * 109.47348 * 59.88896 * 3 2 1 14 14 C 1.46898 * 110.99605 * 85.96820 * 13 3 2 15 15 C 1.50708 * 109.46659 * 175.52212 * 14 13 3 16 16 C 1.41376 * 128.00768 * 269.95537 * 15 14 13 17 17 C 1.50704 * 126.80110 * 0.07417 * 16 15 14 18 18 N 1.30176 * 106.39468 * 180.02562 * 16 15 14 19 19 O 1.20917 * 111.60468 * 359.97438 * 18 16 15 20 20 C 1.34038 * 111.56942 * 359.97438 * 19 18 16 21 21 C 1.50698 * 126.77963 * 179.97438 * 20 19 18 22 22 H 1.09004 * 109.46750 * 295.60094 * 1 2 3 23 23 H 1.08998 * 109.46727 * 55.59630 * 1 2 3 24 24 H 1.08998 * 109.46943 * 175.60159 * 1 2 3 25 25 H 1.08993 * 109.47163 * 239.99611 * 2 1 3 26 26 H 1.09004 * 109.46912 * 119.99349 * 2 1 3 27 27 H 0.96996 * 119.99882 * 180.02562 * 8 7 5 28 28 H 1.00900 * 110.99691 * 209.92045 * 13 3 2 29 29 H 1.08997 * 109.47214 * 55.52740 * 14 13 3 30 30 H 1.08995 * 109.46998 * 295.52091 * 14 13 3 31 31 H 1.08997 * 109.46950 * 269.97941 * 17 16 15 32 32 H 1.08999 * 109.47027 * 29.98241 * 17 16 15 33 33 H 1.09002 * 109.47186 * 149.98536 * 17 16 15 34 34 H 1.09005 * 109.46793 * 0.02767 * 21 20 19 35 35 H 1.09000 * 109.46957 * 120.02487 * 21 20 19 36 36 H 1.09003 * 109.47293 * 240.02899 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4425 0.0019 5 6 1.5399 2.1521 -1.2319 6 1 0.9189 3.0303 -1.1345 7 6 1.8752 1.6802 -2.4833 8 7 2.6311 0.6105 -2.6018 9 14 1.2547 2.5592 -4.0102 10 1 1.7492 3.9595 -4.0105 11 1 1.7524 1.8588 -5.2213 12 1 -0.2303 2.5588 -4.0126 13 7 1.5482 2.1359 1.1981 14 6 2.4423 1.9094 2.3415 15 6 1.9677 2.7219 3.5187 16 6 2.3322 4.0422 3.8689 17 6 3.2893 4.9409 3.1290 18 7 1.6766 4.3281 4.9566 19 8 0.9832 3.4044 5.3144 20 6 1.0924 2.3565 4.4857 21 6 0.3832 1.0324 4.6072 22 1 -0.3633 0.4441 0.9268 23 1 -0.3633 0.5807 -0.8479 24 1 -0.3633 -1.0246 -0.0788 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.8673 0.2787 -3.4821 28 1 1.4293 3.1222 1.0218 29 1 3.4553 2.2118 2.0761 30 1 2.4358 0.8515 2.6038 31 1 4.2980 4.7934 3.5147 32 1 3.2674 4.6986 2.0665 33 1 2.9946 5.9807 3.2707 34 1 -0.2542 1.0415 5.4915 35 1 -0.2280 0.8649 3.7204 36 1 1.1188 0.2331 4.6978 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070797211.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:14 Heat of formation + Delta-G solvation = 43.365317 kcal Electronic energy + Delta-G solvation = -17320.497764 eV Core-core repulsion = 14614.468446 eV Total energy + Delta-G solvation = -2706.029318 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.64343 -36.72952 -34.75958 -33.41868 -32.13704 -30.57734 -28.52374 -27.86039 -26.54784 -24.52746 -23.12168 -21.16601 -19.89563 -19.04315 -17.39465 -16.82674 -16.22985 -14.98760 -14.44902 -14.18135 -13.58615 -13.39011 -13.29140 -13.20935 -12.90157 -12.64981 -12.44443 -12.19148 -12.06269 -11.67602 -11.45496 -10.96707 -10.87202 -10.65319 -10.43387 -10.13466 -9.78776 -9.60344 -9.42599 -8.92180 -8.75896 -8.49231 -7.29957 -6.05523 -4.11243 1.72213 2.45530 3.28393 3.33443 3.35822 3.36871 4.37226 4.41989 4.70905 5.11408 5.24873 5.26835 5.45170 5.57563 5.61038 5.63284 5.67621 5.85009 5.96254 6.08989 6.18747 6.29363 6.43752 6.51613 6.64556 6.81749 7.18529 7.25596 7.45115 7.70758 7.75229 7.80078 8.22134 8.33955 8.52016 8.60609 8.97330 9.53787 11.00264 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030006 B = 0.006509 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.926011 B = 4300.863808 C = 4829.380659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.678 5.678 14 C 0.136 3.864 15 C -0.186 4.186 16 C 0.023 3.977 17 C -0.076 4.076 18 N -0.377 5.377 19 O 0.087 5.913 20 C -0.023 4.023 21 C -0.069 4.069 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.013 0.987 25 H 0.087 0.913 26 H 0.009 0.991 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 1.345 10.866 10.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.019 0.981 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.310 5.310 14 C 0.006 3.994 15 C -0.191 4.191 16 C -0.136 4.136 17 C -0.133 4.133 18 N -0.085 5.085 19 O 0.024 5.976 20 C -0.087 4.087 21 C -0.126 4.126 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.032 0.968 25 H 0.105 0.895 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.148 0.852 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.337 1.779 11.672 11.882 hybrid contribution 0.644 0.486 -1.713 1.894 sum -0.692 2.265 9.959 10.237 Atomic orbital electron populations 1.21449 0.97496 0.97413 1.01324 1.21437 0.95035 0.98173 0.99467 1.19165 0.93004 0.91502 0.85434 0.98102 1.21140 1.31796 1.12035 0.90317 0.92379 1.24870 0.94996 0.94978 0.98883 1.69866 1.36559 1.22645 1.23636 0.86644 0.79294 0.79657 0.82318 1.20387 1.21311 1.20199 1.60792 1.48315 1.16069 1.05817 1.20153 0.94166 0.97361 0.87711 1.21147 1.02089 0.95339 1.00484 1.23467 1.00488 0.95275 0.94383 1.20156 0.96055 0.97394 0.99708 1.73769 1.08541 1.10335 1.15830 1.84738 1.50707 1.17759 1.44430 1.24226 0.99857 0.92817 0.91833 1.20306 0.99994 0.88030 1.04306 0.94024 0.92504 0.96761 0.89494 0.97177 0.92856 0.85171 0.94914 0.90691 0.90517 0.89720 0.90812 0.90641 0.88399 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.52 37.16 0.35 -2.21 16 2 C -0.10 -2.37 5.59 -26.73 -0.15 -2.52 16 3 C 0.22 5.13 2.30 -68.86 -0.16 4.97 16 4 H 0.00 0.04 7.71 -51.93 -0.40 -0.36 16 5 C -0.51 -13.37 7.26 -34.44 -0.25 -13.62 16 6 H 0.06 1.51 7.60 -52.48 -0.40 1.11 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 9 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.61 5.64 -109.21 -0.62 -14.22 16 14 C 0.14 2.35 5.86 -4.97 -0.03 2.32 16 15 C -0.19 -2.99 5.79 -104.42 -0.60 -3.60 16 16 C 0.02 0.36 7.33 -82.10 -0.60 -0.24 16 17 C -0.08 -1.00 10.39 36.01 0.37 -0.63 16 18 N -0.38 -6.31 12.07 33.42 0.40 -5.90 16 19 O 0.09 1.37 11.20 17.18 0.19 1.56 16 20 C -0.02 -0.34 7.49 -35.30 -0.26 -0.61 16 21 C -0.07 -0.76 10.23 36.00 0.37 -0.40 16 22 H 0.04 0.84 7.74 -51.93 -0.40 0.43 16 23 H 0.06 1.34 7.07 -51.93 -0.37 0.97 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 26 H 0.01 0.21 7.61 -51.93 -0.39 -0.19 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.33 6.76 8.13 -39.29 -0.32 6.44 16 29 H 0.03 0.58 7.94 -51.93 -0.41 0.17 16 30 H 0.07 1.27 7.55 -51.93 -0.39 0.88 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 300.87 15.07 4.53 4.53 Total: -1.00 -28.01 300.87 -6.43 -34.45 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.50 Total: 2.60 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -1.06 Total: -14.90 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.41 Total: -43.99 kcal Atomic # 8 Polarization: 1.37 SS G_CDS: 0.19 Total: 1.56 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.01 -6.43 -34.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070797211.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.810 kcal (2) G-P(sol) polarization free energy of solvation -28.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds