Wall clock time and date at job start Sun Mar 29 2020 22:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47347 * 2 1 4 4 H 1.09003 * 109.47467 * 179.89469 * 3 2 1 5 5 C 1.50704 * 109.46692 * 299.88984 * 3 2 1 6 6 H 1.08003 * 119.99759 * 120.00244 * 5 3 2 7 7 C 1.37882 * 120.00300 * 300.00099 * 5 3 2 8 8 N 1.31516 * 119.99569 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00208 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46980 * 59.99981 * 9 7 5 11 11 H 1.48503 * 109.47208 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47397 * 300.00436 * 9 7 5 13 13 N 1.46902 * 109.47348 * 59.88896 * 3 2 1 14 14 C 1.46898 * 110.99605 * 85.96820 * 13 3 2 15 15 C 1.50708 * 109.46659 * 175.52212 * 14 13 3 16 16 C 1.41376 * 128.00768 * 269.95537 * 15 14 13 17 17 C 1.50704 * 126.80110 * 0.07417 * 16 15 14 18 18 N 1.30176 * 106.39468 * 180.02562 * 16 15 14 19 19 O 1.20917 * 111.60468 * 359.97438 * 18 16 15 20 20 C 1.34038 * 111.56942 * 359.97438 * 19 18 16 21 21 C 1.50698 * 126.77963 * 179.97438 * 20 19 18 22 22 H 1.09004 * 109.46750 * 295.60094 * 1 2 3 23 23 H 1.08998 * 109.46727 * 55.59630 * 1 2 3 24 24 H 1.08998 * 109.46943 * 175.60159 * 1 2 3 25 25 H 1.08993 * 109.47163 * 239.99611 * 2 1 3 26 26 H 1.09004 * 109.46912 * 119.99349 * 2 1 3 27 27 H 0.96996 * 119.99882 * 180.02562 * 8 7 5 28 28 H 1.00900 * 110.99691 * 209.92045 * 13 3 2 29 29 H 1.08997 * 109.47214 * 55.52740 * 14 13 3 30 30 H 1.08995 * 109.46998 * 295.52091 * 14 13 3 31 31 H 1.08997 * 109.46950 * 269.97941 * 17 16 15 32 32 H 1.08999 * 109.47027 * 29.98241 * 17 16 15 33 33 H 1.09002 * 109.47186 * 149.98536 * 17 16 15 34 34 H 1.09005 * 109.46793 * 0.02767 * 21 20 19 35 35 H 1.09000 * 109.46957 * 120.02487 * 21 20 19 36 36 H 1.09003 * 109.47293 * 240.02899 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4425 0.0019 5 6 1.5399 2.1521 -1.2319 6 1 0.9189 3.0303 -1.1345 7 6 1.8752 1.6802 -2.4833 8 7 2.6311 0.6105 -2.6018 9 14 1.2547 2.5592 -4.0102 10 1 1.7492 3.9595 -4.0105 11 1 1.7524 1.8588 -5.2213 12 1 -0.2303 2.5588 -4.0126 13 7 1.5482 2.1359 1.1981 14 6 2.4423 1.9094 2.3415 15 6 1.9677 2.7219 3.5187 16 6 2.3322 4.0422 3.8689 17 6 3.2893 4.9409 3.1290 18 7 1.6766 4.3281 4.9566 19 8 0.9832 3.4044 5.3144 20 6 1.0924 2.3565 4.4857 21 6 0.3832 1.0324 4.6072 22 1 -0.3633 0.4441 0.9268 23 1 -0.3633 0.5807 -0.8479 24 1 -0.3633 -1.0246 -0.0788 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.8673 0.2787 -3.4821 28 1 1.4293 3.1222 1.0218 29 1 3.4553 2.2118 2.0761 30 1 2.4358 0.8515 2.6038 31 1 4.2980 4.7934 3.5147 32 1 3.2674 4.6986 2.0665 33 1 2.9946 5.9807 3.2707 34 1 -0.2542 1.0415 5.4915 35 1 -0.2280 0.8649 3.7204 36 1 1.1188 0.2331 4.6978 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070797211.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:14 Heat of formation + Delta-G solvation = 26.863309 kcal Electronic energy + Delta-G solvation = -17321.213345 eV Core-core repulsion = 14614.468446 eV Total energy + Delta-G solvation = -2706.744899 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.86094 -38.36921 -36.20014 -34.67352 -33.84502 -32.28197 -29.67286 -29.17453 -28.09569 -26.14764 -24.91712 -22.48644 -21.10574 -20.83076 -18.63130 -18.47236 -17.70470 -16.88204 -16.03671 -15.54619 -15.25758 -14.94087 -14.56399 -14.30101 -14.14464 -13.84583 -13.81187 -13.54892 -13.41480 -13.10248 -12.95429 -12.77725 -12.62895 -12.38295 -12.08121 -11.75053 -11.58877 -11.27149 -10.86024 -10.73748 -10.50980 -10.05819 -8.99097 -8.07993 -6.19530 0.54190 1.21958 1.43458 1.44692 1.51465 2.23792 2.44025 3.21094 3.24417 3.58961 3.76610 4.02761 4.14835 4.42921 4.59911 4.62631 4.68470 4.70487 4.76115 4.80376 4.85227 4.93256 4.98903 5.05138 5.18805 5.30511 5.36390 5.44644 5.60801 5.73835 5.87243 5.94222 6.32664 6.49670 6.79091 7.02559 7.32843 7.49090 8.96536 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030006 B = 0.006509 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.926011 B = 4300.863808 C = 4829.380659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C 0.223 3.777 4 H -0.031 1.031 5 C -0.524 4.524 6 H 0.054 0.946 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.146 3.854 15 C -0.211 4.211 16 C 0.017 3.983 17 C -0.075 4.075 18 N -0.397 5.397 19 O 0.084 5.916 20 C -0.009 4.009 21 C -0.070 4.070 22 H 0.055 0.945 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.056 0.944 26 H 0.026 0.974 27 H 0.261 0.739 28 H 0.328 0.672 29 H 0.027 0.973 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 1.309 11.668 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C 0.115 3.885 4 H -0.014 1.014 5 C -0.563 4.563 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.775 3.225 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.301 5.301 14 C 0.016 3.984 15 C -0.215 4.215 16 C -0.142 4.142 17 C -0.132 4.132 18 N -0.106 5.106 19 O 0.022 5.978 20 C -0.073 4.073 21 C -0.127 4.127 22 H 0.074 0.926 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.045 0.955 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.145 1.745 12.495 12.797 hybrid contribution 0.901 0.485 -1.894 2.153 sum -1.244 2.230 10.601 10.904 Atomic orbital electron populations 1.21312 0.96005 0.98317 1.00866 1.21314 0.96243 0.97422 0.98768 1.18946 0.90961 0.92246 0.86322 1.01379 1.21417 1.31441 1.11976 0.91450 0.92752 1.25545 0.95255 0.95613 1.01467 1.69994 1.37571 1.23774 1.24021 0.85754 0.78774 0.78726 0.79222 1.19924 1.21176 1.19878 1.60720 1.48697 1.15548 1.05163 1.20021 0.93314 0.97970 0.87085 1.21028 1.03815 0.95727 1.00920 1.23863 1.00455 0.95618 0.94244 1.20227 0.96454 0.97539 0.99018 1.73763 1.09391 1.11011 1.16460 1.84722 1.50573 1.17902 1.44600 1.24832 0.98520 0.93376 0.90566 1.20503 1.00499 0.86311 1.05348 0.92619 0.94993 0.94838 0.92513 0.95503 0.93010 0.85503 0.95528 0.90046 0.88922 0.90374 0.89796 0.88052 0.88755 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 9.52 71.98 0.69 -3.78 16 2 C -0.10 -4.52 5.59 30.60 0.17 -4.35 16 3 C 0.22 10.63 2.30 44.17 0.10 10.73 16 4 H -0.03 -1.67 7.71 -2.39 -0.02 -1.69 16 5 C -0.52 -27.36 7.26 25.60 0.19 -27.18 16 6 H 0.05 2.82 7.60 -2.91 -0.02 2.80 16 7 C 0.02 1.10 5.30 84.66 0.45 1.55 16 8 N -0.91 -50.96 11.32 21.45 0.24 -50.71 16 9 Si 0.95 42.54 29.54 68.60 2.03 44.56 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 N -0.67 -26.48 5.64 -499.44 -2.82 -29.29 16 14 C 0.15 4.91 5.86 85.56 0.50 5.41 16 15 C -0.21 -6.48 5.79 -19.73 -0.11 -6.60 16 16 C 0.02 0.52 7.33 43.58 0.32 0.84 16 17 C -0.07 -1.91 10.39 71.24 0.74 -1.17 16 18 N -0.40 -12.80 12.07 -49.56 -0.60 -13.39 16 19 O 0.08 2.49 11.20 71.65 0.80 3.29 16 20 C -0.01 -0.24 7.49 25.04 0.19 -0.05 16 21 C -0.07 -1.33 10.23 71.24 0.73 -0.60 16 22 H 0.05 2.12 7.74 -2.38 -0.02 2.10 16 23 H 0.03 1.46 7.07 -2.39 -0.02 1.44 16 24 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 26 H 0.03 1.10 7.61 -2.39 -0.02 1.09 16 27 H 0.26 13.97 8.31 -92.71 -0.77 13.19 16 28 H 0.33 13.30 8.13 -89.69 -0.73 12.57 16 29 H 0.03 0.94 7.94 -2.39 -0.02 0.92 16 30 H 0.08 2.63 7.55 -2.39 -0.02 2.61 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -59.12 300.87 3.95 -55.17 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.34 Total: 15.57 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 3.96 Total: -25.19 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -3.17 Total: -93.40 kcal Atomic # 8 Polarization: 2.49 SS G_CDS: 0.80 Total: 3.29 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -59.12 3.95 -55.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070797211.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.030 kcal (2) G-P(sol) polarization free energy of solvation -59.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds