Wall clock time and date at job start Sun Mar 29 2020 22:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46930 * 2 1 4 4 H 1.08999 * 109.46938 * 174.08448 * 3 2 1 5 5 C 1.50700 * 109.46994 * 54.08720 * 3 2 1 6 6 H 1.08002 * 120.00520 * 239.99695 * 5 3 2 7 7 C 1.37873 * 119.99985 * 60.00060 * 5 3 2 8 8 N 1.31520 * 120.00035 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00299 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46983 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47558 * 119.99819 * 9 7 5 12 12 H 1.48505 * 109.47001 * 239.99697 * 9 7 5 13 13 N 1.46897 * 109.47364 * 294.08684 * 3 2 1 14 14 C 1.46896 * 111.00344 * 275.57281 * 13 3 2 15 15 C 1.50698 * 109.47416 * 176.33472 * 14 13 3 16 16 C 1.41386 * 128.00107 * 269.67793 * 15 14 13 17 17 C 1.50692 * 126.80592 * 0.03042 * 16 15 14 18 18 N 1.30184 * 106.39214 * 179.89543 * 16 15 14 19 19 O 1.20915 * 111.60408 * 0.39054 * 18 16 15 20 20 C 1.34045 * 111.57171 * 359.74591 * 19 18 16 21 21 C 1.50692 * 126.78120 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.46932 * 178.56168 * 1 2 3 23 23 H 1.08995 * 109.47407 * 58.55618 * 1 2 3 24 24 H 1.08997 * 109.46651 * 298.55513 * 1 2 3 25 25 H 1.08997 * 109.47311 * 120.00689 * 2 1 3 26 26 H 1.09007 * 109.46584 * 240.00667 * 2 1 3 27 27 H 0.97006 * 120.00138 * 180.02562 * 8 7 5 28 28 H 1.00899 * 111.00158 * 39.53081 * 13 3 2 29 29 H 1.09006 * 109.46730 * 296.32972 * 14 13 3 30 30 H 1.08996 * 109.47238 * 56.32435 * 14 13 3 31 31 H 1.09000 * 109.47082 * 89.99990 * 17 16 15 32 32 H 1.08998 * 109.47768 * 210.00546 * 17 16 15 33 33 H 1.09003 * 109.46996 * 330.00389 * 17 16 15 34 34 H 1.09000 * 109.47111 * 269.99836 * 21 20 19 35 35 H 1.09000 * 109.47494 * 29.99797 * 21 20 19 36 36 H 1.09002 * 109.47465 * 149.99612 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4443 0.1059 5 6 1.4217 2.1938 1.1507 6 1 0.8147 3.0670 0.9618 7 6 1.6308 1.7666 2.4448 8 7 2.3695 0.7031 2.6750 9 14 0.8638 2.6975 3.8713 10 1 0.0839 3.8483 3.3491 11 1 -0.0371 1.7906 4.6271 12 1 1.9353 3.1939 4.7717 13 7 1.6703 2.0926 -1.2643 14 6 2.6536 1.7980 -2.3151 15 6 2.1958 2.4049 -3.6162 16 6 1.3913 1.8135 -4.6172 17 6 0.8059 0.4250 -4.6015 18 7 1.2540 2.7072 -5.5538 19 8 1.8452 3.7274 -5.2859 20 6 2.4644 3.6412 -4.1001 21 6 3.2950 4.7090 -3.4363 22 1 -0.3633 -1.0273 -0.0258 23 1 -0.3634 0.5361 -0.8767 24 1 -0.3632 0.4912 0.9027 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 2.5163 0.4023 3.5855 28 1 0.7417 1.8222 -1.5520 29 1 3.6195 2.2200 -2.0373 30 1 2.7488 0.7184 -2.4313 31 1 -0.1781 0.4508 -4.1334 32 1 0.7125 0.0584 -5.6238 33 1 1.4600 -0.2387 -4.0360 34 1 4.3358 4.6021 -3.7416 35 1 2.9284 5.6917 -3.7333 36 1 3.2215 4.6059 -2.3536 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070797215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:17 Heat of formation + Delta-G solvation = 45.073716 kcal Electronic energy + Delta-G solvation = -17340.073064 eV Core-core repulsion = 14634.117827 eV Total energy + Delta-G solvation = -2705.955237 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.64493 -36.92429 -34.81327 -33.43368 -32.13433 -30.47376 -28.51709 -27.83561 -26.52730 -24.62034 -23.23405 -21.15774 -19.88911 -19.32064 -17.40558 -16.77195 -16.05295 -14.84442 -14.83314 -14.24222 -13.67177 -13.35727 -13.30351 -12.99109 -12.78723 -12.68247 -12.51890 -12.32145 -12.00723 -11.83653 -11.64424 -10.95074 -10.78590 -10.67033 -10.54435 -10.01538 -9.94073 -9.63215 -9.55251 -9.03062 -8.83003 -8.37613 -7.26869 -6.00460 -4.01945 1.71730 2.44965 3.29578 3.36908 3.38236 3.43159 4.39569 4.43332 4.70587 5.10953 5.25875 5.31654 5.45975 5.54217 5.58300 5.62410 5.68155 5.82882 5.99267 6.07565 6.18346 6.25817 6.31536 6.36327 6.44474 6.54066 6.86179 7.22501 7.24271 7.47126 7.66610 7.86239 8.23935 8.48505 8.51543 8.57637 9.04179 9.62070 11.06654 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.006444 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.980887 B = 4344.096517 C = 4853.002398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.678 5.678 14 C 0.134 3.866 15 C -0.187 4.187 16 C 0.021 3.979 17 C -0.075 4.075 18 N -0.377 5.377 19 O 0.087 5.913 20 C -0.021 4.021 21 C -0.072 4.072 22 H 0.022 0.978 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.011 0.989 27 H 0.259 0.741 28 H 0.328 0.672 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 1.792 -10.692 10.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.052 0.948 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.309 5.309 14 C 0.004 3.996 15 C -0.191 4.191 16 C -0.138 4.138 17 C -0.132 4.132 18 N -0.084 5.084 19 O 0.024 5.976 20 C -0.085 4.085 21 C -0.130 4.130 22 H 0.041 0.959 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.029 0.971 27 H 0.068 0.932 28 H 0.146 0.854 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.490 2.327 -11.534 11.776 hybrid contribution -0.336 -0.802 1.336 1.594 sum 0.154 1.525 -10.198 10.312 Atomic orbital electron populations 1.21562 0.97665 0.98001 1.01258 1.22107 0.95055 1.01119 1.00219 1.19231 0.96148 0.88685 0.85193 0.94812 1.21086 1.30417 1.11527 0.89659 0.91970 1.24903 0.95550 0.95164 0.98695 1.69893 1.39314 1.24123 1.20253 0.86532 0.79047 0.79930 0.82469 1.19763 1.21241 1.21171 1.60953 1.03837 1.63148 1.02962 1.20150 0.97024 0.96512 0.85887 1.21144 1.03806 0.94615 0.99533 1.23451 1.00087 0.98514 0.91721 1.20142 1.01159 0.88852 1.03079 1.73774 1.16273 0.94591 1.23800 1.84733 1.49001 1.31277 1.32623 1.24249 0.99421 0.97821 0.87056 1.20355 0.97015 0.94343 1.01258 0.95877 0.95240 0.91527 0.88907 0.97071 0.93158 0.85402 0.90549 0.94923 0.90177 0.90941 0.90107 0.90022 0.90348 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.39 37.16 0.35 -2.29 16 2 C -0.15 -3.26 5.50 -26.73 -0.15 -3.41 16 3 C 0.21 5.06 2.33 -68.87 -0.16 4.90 16 4 H 0.03 0.88 7.86 -51.93 -0.41 0.47 16 5 C -0.49 -12.78 7.35 -34.44 -0.25 -13.03 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.53 5.22 -17.82 -0.09 1.43 16 8 N -0.90 -24.63 11.39 55.43 0.63 -24.00 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.68 -13.71 6.24 -109.23 -0.68 -14.39 16 14 C 0.13 2.32 5.73 -4.98 -0.03 2.29 16 15 C -0.19 -3.01 5.80 -104.42 -0.61 -3.62 16 16 C 0.02 0.34 7.33 -82.10 -0.60 -0.27 16 17 C -0.07 -0.97 10.39 36.00 0.37 -0.59 16 18 N -0.38 -6.29 12.07 33.42 0.40 -5.88 16 19 O 0.09 1.38 11.20 17.16 0.19 1.57 16 20 C -0.02 -0.32 7.49 -35.31 -0.26 -0.58 16 21 C -0.07 -0.82 10.25 36.00 0.37 -0.45 16 22 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.03 0.55 6.42 -51.93 -0.33 0.22 16 24 H 0.07 1.53 7.05 -51.93 -0.37 1.16 16 25 H 0.09 2.36 6.25 -51.93 -0.32 2.03 16 26 H 0.01 0.22 7.26 -51.93 -0.38 -0.16 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.33 6.58 6.55 -39.29 -0.26 6.32 16 29 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 30 H 0.03 0.56 6.76 -51.93 -0.35 0.21 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.99 7.65 -51.93 -0.40 0.60 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.31 8.05 -51.93 -0.42 0.90 16 LS Contribution 297.26 15.07 4.48 4.48 Total: -1.00 -28.11 297.26 -6.37 -34.48 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.31 Total: 3.48 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -1.06 Total: -15.62 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.35 Total: -44.28 kcal Atomic # 8 Polarization: 1.38 SS G_CDS: 0.19 Total: 1.57 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.11 -6.37 -34.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070797215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.554 kcal (2) G-P(sol) polarization free energy of solvation -28.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds