Wall clock time and date at job start Sun Mar 29 2020 22:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46930 * 2 1 4 4 H 1.08999 * 109.46938 * 174.08448 * 3 2 1 5 5 C 1.50700 * 109.46994 * 54.08720 * 3 2 1 6 6 H 1.08002 * 120.00520 * 239.99695 * 5 3 2 7 7 C 1.37873 * 119.99985 * 60.00060 * 5 3 2 8 8 N 1.31520 * 120.00035 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00299 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46983 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47558 * 119.99819 * 9 7 5 12 12 H 1.48505 * 109.47001 * 239.99697 * 9 7 5 13 13 N 1.46897 * 109.47364 * 294.08684 * 3 2 1 14 14 C 1.46896 * 111.00344 * 275.57281 * 13 3 2 15 15 C 1.50698 * 109.47416 * 176.33472 * 14 13 3 16 16 C 1.41386 * 128.00107 * 269.67793 * 15 14 13 17 17 C 1.50692 * 126.80592 * 0.03042 * 16 15 14 18 18 N 1.30184 * 106.39214 * 179.89543 * 16 15 14 19 19 O 1.20915 * 111.60408 * 0.39054 * 18 16 15 20 20 C 1.34045 * 111.57171 * 359.74591 * 19 18 16 21 21 C 1.50692 * 126.78120 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.46932 * 178.56168 * 1 2 3 23 23 H 1.08995 * 109.47407 * 58.55618 * 1 2 3 24 24 H 1.08997 * 109.46651 * 298.55513 * 1 2 3 25 25 H 1.08997 * 109.47311 * 120.00689 * 2 1 3 26 26 H 1.09007 * 109.46584 * 240.00667 * 2 1 3 27 27 H 0.97006 * 120.00138 * 180.02562 * 8 7 5 28 28 H 1.00899 * 111.00158 * 39.53081 * 13 3 2 29 29 H 1.09006 * 109.46730 * 296.32972 * 14 13 3 30 30 H 1.08996 * 109.47238 * 56.32435 * 14 13 3 31 31 H 1.09000 * 109.47082 * 89.99990 * 17 16 15 32 32 H 1.08998 * 109.47768 * 210.00546 * 17 16 15 33 33 H 1.09003 * 109.46996 * 330.00389 * 17 16 15 34 34 H 1.09000 * 109.47111 * 269.99836 * 21 20 19 35 35 H 1.09000 * 109.47494 * 29.99797 * 21 20 19 36 36 H 1.09002 * 109.47465 * 149.99612 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4443 0.1059 5 6 1.4217 2.1938 1.1507 6 1 0.8147 3.0670 0.9618 7 6 1.6308 1.7666 2.4448 8 7 2.3695 0.7031 2.6750 9 14 0.8638 2.6975 3.8713 10 1 0.0839 3.8483 3.3491 11 1 -0.0371 1.7906 4.6271 12 1 1.9353 3.1939 4.7717 13 7 1.6703 2.0926 -1.2643 14 6 2.6536 1.7980 -2.3151 15 6 2.1958 2.4049 -3.6162 16 6 1.3913 1.8135 -4.6172 17 6 0.8059 0.4250 -4.6015 18 7 1.2540 2.7072 -5.5538 19 8 1.8452 3.7274 -5.2859 20 6 2.4644 3.6412 -4.1001 21 6 3.2950 4.7090 -3.4363 22 1 -0.3633 -1.0273 -0.0258 23 1 -0.3634 0.5361 -0.8767 24 1 -0.3632 0.4912 0.9027 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 2.5163 0.4023 3.5855 28 1 0.7417 1.8222 -1.5520 29 1 3.6195 2.2200 -2.0373 30 1 2.7488 0.7184 -2.4313 31 1 -0.1781 0.4508 -4.1334 32 1 0.7125 0.0584 -5.6238 33 1 1.4600 -0.2387 -4.0360 34 1 4.3358 4.6021 -3.7416 35 1 2.9284 5.6917 -3.7333 36 1 3.2215 4.6059 -2.3536 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070797215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:16 Heat of formation + Delta-G solvation = 28.230998 kcal Electronic energy + Delta-G solvation = -17340.803419 eV Core-core repulsion = 14634.117827 eV Total energy + Delta-G solvation = -2706.685592 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.85447 -38.56802 -36.21190 -34.67441 -33.88666 -32.11447 -29.61839 -29.16678 -28.10629 -26.21652 -25.01078 -22.45949 -21.15372 -21.03545 -18.62830 -18.30001 -17.68492 -16.74012 -16.42180 -15.56415 -15.23602 -14.77917 -14.47846 -14.29957 -14.18888 -13.92348 -13.81706 -13.60384 -13.45499 -13.15921 -13.04549 -12.80764 -12.52644 -12.41758 -11.96578 -11.87327 -11.63487 -11.38182 -10.96647 -10.80002 -10.40757 -10.06678 -8.91939 -8.03237 -6.10686 0.53301 1.22685 1.42905 1.46915 1.56969 2.22543 2.48162 3.25372 3.26417 3.58907 3.77793 4.00652 4.15582 4.42338 4.56984 4.58557 4.60718 4.67337 4.69178 4.74599 4.79361 4.81128 4.92839 5.02532 5.13749 5.20092 5.31615 5.39244 5.45971 5.71431 5.78053 5.87048 6.34641 6.69494 6.82623 7.01604 7.32201 7.57139 9.02249 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.006444 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.980887 B = 4344.096517 C = 4853.002398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.139 4.139 3 C 0.222 3.778 4 H 0.005 0.995 5 C -0.497 4.497 6 H 0.051 0.949 7 C 0.016 3.984 8 N -0.920 5.920 9 Si 0.947 3.053 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.679 5.679 14 C 0.144 3.856 15 C -0.211 4.211 16 C 0.019 3.981 17 C -0.076 4.076 18 N -0.397 5.397 19 O 0.082 5.918 20 C -0.011 4.011 21 C -0.071 4.071 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.029 0.971 27 H 0.258 0.742 28 H 0.330 0.670 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 2.158 -11.396 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.179 4.179 3 C 0.114 3.886 4 H 0.023 0.977 5 C -0.536 4.536 6 H 0.069 0.931 7 C -0.182 4.182 8 N -0.560 5.560 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.310 5.310 14 C 0.014 3.986 15 C -0.215 4.215 16 C -0.140 4.140 17 C -0.133 4.133 18 N -0.106 5.106 19 O 0.021 5.979 20 C -0.075 4.075 21 C -0.129 4.129 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.148 0.852 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.129 2.711 -12.252 12.549 hybrid contribution -0.186 -0.889 1.503 1.757 sum -0.057 1.821 -10.749 10.902 Atomic orbital electron populations 1.21450 0.96193 0.99280 1.00711 1.21956 0.96295 1.00055 0.99547 1.18962 0.94077 0.89402 0.86161 0.97739 1.21294 1.30154 1.11310 0.90852 0.93079 1.25522 0.96009 0.95868 1.00791 1.70009 1.40284 1.25172 1.20561 0.85676 0.78257 0.78853 0.79846 1.19530 1.21000 1.21021 1.60808 1.04558 1.62891 1.02745 1.20015 0.96183 0.96793 0.85597 1.21052 1.05500 0.95548 0.99415 1.23883 0.99509 0.99415 0.91181 1.20259 1.01344 0.87445 1.04254 1.73767 1.17297 0.95059 1.24517 1.84718 1.49081 1.31157 1.32937 1.24819 0.98214 0.98056 0.86401 1.20500 0.97955 0.94373 1.00028 0.93816 0.93512 0.94112 0.92002 0.95206 0.93248 0.85164 0.90572 0.94661 0.89542 0.89502 0.89543 0.87560 0.88243 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 9.39 71.98 0.68 -4.10 16 2 C -0.14 -6.16 5.50 30.59 0.17 -5.99 16 3 C 0.22 10.49 2.33 44.17 0.10 10.59 16 4 H 0.00 0.25 7.86 -2.39 -0.02 0.23 16 5 C -0.50 -26.12 7.35 25.60 0.19 -25.93 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 7 C 0.02 0.87 5.22 84.65 0.44 1.31 16 8 N -0.92 -51.03 11.39 21.45 0.24 -50.78 16 9 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 N -0.68 -26.96 6.24 -499.49 -3.12 -30.08 16 14 C 0.14 4.83 5.73 85.56 0.49 5.32 16 15 C -0.21 -6.51 5.80 -19.73 -0.11 -6.62 16 16 C 0.02 0.57 7.33 43.58 0.32 0.89 16 17 C -0.08 -1.80 10.39 71.23 0.74 -1.06 16 18 N -0.40 -12.69 12.07 -49.55 -0.60 -13.28 16 19 O 0.08 2.47 11.20 71.59 0.80 3.28 16 20 C -0.01 -0.30 7.49 25.04 0.19 -0.11 16 21 C -0.07 -1.48 10.25 71.23 0.73 -0.75 16 22 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.05 1.69 6.42 -2.39 -0.02 1.67 16 24 H 0.04 1.83 7.05 -2.39 -0.02 1.81 16 25 H 0.06 3.16 6.25 -2.39 -0.01 3.14 16 26 H 0.03 1.18 7.26 -2.38 -0.02 1.16 16 27 H 0.26 13.77 8.31 -92.70 -0.77 13.00 16 28 H 0.33 12.81 6.55 -89.69 -0.59 12.23 16 29 H 0.08 2.54 8.06 -2.38 -0.02 2.52 16 30 H 0.04 1.17 6.76 -2.39 -0.02 1.16 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.09 1.95 7.65 -2.39 -0.02 1.93 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 2.17 8.05 -2.39 -0.02 2.15 16 Total: -1.00 -59.28 297.26 3.77 -55.51 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.49 Total: 16.92 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 3.93 Total: -26.46 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -3.47 Total: -94.15 kcal Atomic # 8 Polarization: 2.47 SS G_CDS: 0.80 Total: 3.28 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -59.28 3.77 -55.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070797215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.742 kcal (2) G-P(sol) polarization free energy of solvation -59.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds