Wall clock time and date at job start Sun Mar 29 2020 22:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34328 * 126.43951 * 2 1 4 4 N 1.34482 * 107.66945 * 179.76732 * 3 2 1 5 5 C 1.30258 * 108.69673 * 0.42559 * 4 3 2 6 6 C 1.50700 * 125.61855 * 179.83748 * 5 4 3 7 7 N 1.46900 * 109.47124 * 77.14959 * 6 5 4 8 8 C 1.46907 * 110.99604 * 200.83696 * 7 6 5 9 9 C 1.50699 * 109.46697 * 169.99547 * 8 7 6 10 10 H 1.08001 * 120.00081 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99580 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99479 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00336 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47082 * 89.99305 * 13 11 9 15 15 H 1.48497 * 109.47266 * 209.99692 * 13 11 9 16 16 H 1.48498 * 109.46851 * 329.99639 * 13 11 9 17 17 C 1.46893 * 111.00298 * 76.88257 * 7 6 5 18 18 C 1.52998 * 109.47058 * 281.97226 * 17 7 6 19 19 C 1.53005 * 109.47168 * 41.96967 * 17 7 6 20 20 O 1.33975 * 108.76072 * 359.57380 * 5 4 3 21 21 H 1.09005 * 109.46644 * 269.97265 * 1 2 3 22 22 H 1.09000 * 109.47303 * 29.97255 * 1 2 3 23 23 H 1.08997 * 109.46626 * 149.97567 * 1 2 3 24 24 H 1.07998 * 126.16866 * 0.03202 * 3 2 1 25 25 H 1.08997 * 109.47146 * 317.14484 * 6 5 4 26 26 H 1.09002 * 109.47057 * 197.14668 * 6 5 4 27 27 H 1.08999 * 109.46791 * 289.99818 * 8 7 6 28 28 H 1.09002 * 109.47272 * 49.99918 * 8 7 6 29 29 H 0.97004 * 119.99634 * 180.02562 * 12 11 9 30 30 H 1.08999 * 109.47225 * 161.97107 * 17 7 6 31 31 H 1.09004 * 109.47285 * 70.38650 * 18 17 7 32 32 H 1.09006 * 109.47174 * 190.38337 * 18 17 7 33 33 H 1.08996 * 109.47279 * 310.38477 * 18 17 7 34 34 H 1.09010 * 109.46917 * 60.00229 * 19 17 7 35 35 H 1.08996 * 109.47150 * 179.97438 * 19 17 7 36 36 H 1.08999 * 109.47161 * 300.00178 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6479 0.0052 5 6 3.5766 -0.6546 -0.0008 6 6 4.8005 -1.5338 -0.0014 7 7 5.3741 -1.5756 1.3503 8 6 6.7847 -1.9840 1.3112 9 6 7.4044 -1.7806 2.6697 10 1 6.8097 -1.3877 3.4811 11 6 8.7302 -2.0972 2.8770 12 7 9.2709 -1.9201 4.0627 13 14 9.7586 -2.7775 1.4738 14 1 10.3983 -1.6561 0.7399 15 1 10.8084 -3.6750 2.0192 16 1 8.8864 -3.5422 0.5465 17 6 4.5941 -2.4600 2.2261 18 6 3.3253 -1.7366 2.6819 19 6 4.2110 -3.7278 1.4601 20 8 2.3075 -1.0839 -0.0006 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3632 -0.8898 -0.5142 24 1 1.9821 2.1113 0.0005 25 1 5.5371 -1.1307 -0.6964 26 1 4.5236 -2.5419 -0.3099 27 1 6.8506 -3.0366 1.0355 28 1 7.3172 -1.3817 0.5751 29 1 10.2038 -2.1425 4.2085 30 1 5.1920 -2.7284 3.0970 31 1 2.6435 -1.6321 1.8379 32 1 2.8416 -2.3132 3.4704 33 1 3.5868 -0.7491 3.0622 34 1 5.1150 -4.2433 1.1354 35 1 3.6325 -4.3843 2.1101 36 1 3.6130 -3.4594 0.5892 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072686173.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:48 Heat of formation + Delta-G solvation = 35.642720 kcal Electronic energy + Delta-G solvation = -17576.728554 eV Core-core repulsion = 14870.364358 eV Total energy + Delta-G solvation = -2706.364195 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.12192 -37.99647 -34.45240 -32.84793 -32.51112 -31.17353 -29.18820 -26.84340 -26.41200 -24.49760 -22.04484 -21.78723 -20.84188 -19.04519 -16.89298 -16.63665 -16.43664 -15.53285 -14.71092 -14.43467 -14.08066 -13.80556 -13.30021 -13.25615 -13.13050 -12.76932 -12.43169 -12.39057 -12.19539 -11.84403 -11.17684 -11.14921 -10.92110 -10.73740 -10.53503 -10.44588 -10.16190 -10.02780 -9.91291 -9.30134 -8.57499 -8.40316 -7.46891 -6.05112 -4.02663 1.65170 2.83137 3.00941 3.29001 3.36207 3.36709 4.36183 4.41431 4.72188 4.86370 5.09292 5.20106 5.26864 5.28438 5.47059 5.50903 5.55031 5.70646 5.79829 5.86100 6.01541 6.06289 6.20224 6.23995 6.27706 6.40956 6.55820 6.66658 6.73064 6.93041 6.98613 7.54709 7.82660 7.94121 8.10900 8.62865 9.03966 9.55578 11.07926 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039474 B = 0.006329 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.151855 B = 4422.985314 C = 4558.860305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.069 4.069 3 C -0.042 4.042 4 N -0.468 5.468 5 C 0.223 3.777 6 C 0.130 3.870 7 N -0.511 5.511 8 C 0.164 3.836 9 C -0.508 4.508 10 H 0.082 0.918 11 C 0.070 3.930 12 N -0.899 5.899 13 Si 0.874 3.126 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.267 1.267 17 C 0.076 3.924 18 C -0.149 4.149 19 C -0.184 4.184 20 O -0.204 6.204 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.177 0.823 25 H 0.106 0.894 26 H 0.070 0.930 27 H -0.005 1.005 28 H 0.028 0.972 29 H 0.264 0.736 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.892 -0.043 -8.962 18.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.122 4.122 3 C -0.181 4.181 4 N -0.197 5.197 5 C 0.015 3.985 6 C 0.001 3.999 7 N -0.236 5.236 8 C 0.038 3.962 9 C -0.546 4.546 10 H 0.100 0.900 11 C -0.132 4.132 12 N -0.538 5.538 13 Si 0.701 3.299 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.192 1.192 17 C -0.032 4.032 18 C -0.207 4.207 19 C -0.243 4.243 20 O -0.092 6.092 21 H 0.098 0.902 22 H 0.106 0.894 23 H 0.092 0.908 24 H 0.194 0.806 25 H 0.124 0.876 26 H 0.087 0.913 27 H 0.012 0.988 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.175 0.736 -8.653 17.484 hybrid contribution 0.067 -1.370 -0.908 1.645 sum -15.108 -0.633 -9.561 17.890 Atomic orbital electron populations 1.20181 0.84587 1.03787 1.03434 1.23303 0.94784 0.85078 1.09005 1.23076 0.88276 1.00021 1.06700 1.70487 1.22159 1.09441 1.17578 1.26337 0.83585 0.90341 0.98227 1.20648 0.88581 0.95684 0.95024 1.62024 1.04031 1.51885 1.05624 1.20244 0.83064 0.93702 0.99186 1.20973 0.95798 1.42817 0.95051 0.90032 1.24874 0.97552 0.95325 0.95433 1.69892 1.13417 1.48744 1.21717 0.86887 0.80517 0.79494 0.83007 1.20064 1.21227 1.19226 1.21725 0.94498 0.89587 0.97391 1.22034 0.97155 1.01025 1.00491 1.22481 1.01462 0.99419 1.00904 1.84411 1.18231 1.36564 1.69990 0.90157 0.89432 0.90776 0.80594 0.87616 0.91273 0.98766 0.95376 0.92634 0.87863 0.92935 0.93246 0.92229 0.92366 0.92511 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.43 36.01 0.38 -0.14 16 2 C -0.07 -0.91 7.37 -35.69 -0.26 -1.17 16 3 C -0.04 -0.61 11.80 -17.77 -0.21 -0.82 16 4 N -0.47 -8.59 11.29 -11.10 -0.13 -8.72 16 5 C 0.22 3.89 6.06 -12.95 -0.08 3.81 16 6 C 0.13 2.29 5.21 -4.98 -0.03 2.27 16 7 N -0.51 -10.72 4.37 -229.52 -1.00 -11.72 16 8 C 0.16 3.87 3.70 -4.97 -0.02 3.85 16 9 C -0.51 -14.26 8.76 -34.44 -0.30 -14.57 16 10 H 0.08 2.52 7.59 -52.49 -0.40 2.12 16 11 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 12 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 13 Si 0.87 21.16 27.47 -169.99 -4.67 16.49 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 17 C 0.08 1.47 2.70 -67.71 -0.18 1.29 16 18 C -0.15 -2.63 8.59 37.16 0.32 -2.31 16 19 C -0.18 -2.98 8.17 37.16 0.30 -2.68 16 20 O -0.20 -3.20 8.55 5.37 0.05 -3.16 16 21 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.18 2.00 8.06 -52.49 -0.42 1.57 16 25 H 0.11 1.79 7.71 -51.93 -0.40 1.39 16 26 H 0.07 1.09 5.14 -51.93 -0.27 0.82 16 27 H -0.01 -0.12 6.17 -51.93 -0.32 -0.44 16 28 H 0.03 0.67 7.25 -51.93 -0.38 0.29 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.10 2.27 6.58 -51.93 -0.34 1.93 16 31 H 0.05 0.88 4.41 -51.93 -0.23 0.66 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.97 7.19 -51.92 -0.37 0.60 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.82 6.03 -51.93 -0.31 0.51 16 LS Contribution 287.92 15.07 4.34 4.34 Total: -1.00 -31.95 287.92 -5.96 -37.91 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.14 Total: 0.05 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -0.18 Total: -8.57 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.35 Total: -47.06 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: 0.05 Total: -3.16 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.95 -5.96 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072686173.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.550 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds