Wall clock time and date at job start Sun Mar 29 2020 22:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34328 * 126.43951 * 2 1 4 4 N 1.34482 * 107.66945 * 179.76732 * 3 2 1 5 5 C 1.30258 * 108.69673 * 0.42559 * 4 3 2 6 6 C 1.50700 * 125.61855 * 179.83748 * 5 4 3 7 7 N 1.46900 * 109.47124 * 77.14959 * 6 5 4 8 8 C 1.46907 * 110.99604 * 200.83696 * 7 6 5 9 9 C 1.50699 * 109.46697 * 169.99547 * 8 7 6 10 10 H 1.08001 * 120.00081 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99580 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99479 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00336 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47082 * 89.99305 * 13 11 9 15 15 H 1.48497 * 109.47266 * 209.99692 * 13 11 9 16 16 H 1.48498 * 109.46851 * 329.99639 * 13 11 9 17 17 C 1.46893 * 111.00298 * 76.88257 * 7 6 5 18 18 C 1.52998 * 109.47058 * 281.97226 * 17 7 6 19 19 C 1.53005 * 109.47168 * 41.96967 * 17 7 6 20 20 O 1.33975 * 108.76072 * 359.57380 * 5 4 3 21 21 H 1.09005 * 109.46644 * 269.97265 * 1 2 3 22 22 H 1.09000 * 109.47303 * 29.97255 * 1 2 3 23 23 H 1.08997 * 109.46626 * 149.97567 * 1 2 3 24 24 H 1.07998 * 126.16866 * 0.03202 * 3 2 1 25 25 H 1.08997 * 109.47146 * 317.14484 * 6 5 4 26 26 H 1.09002 * 109.47057 * 197.14668 * 6 5 4 27 27 H 1.08999 * 109.46791 * 289.99818 * 8 7 6 28 28 H 1.09002 * 109.47272 * 49.99918 * 8 7 6 29 29 H 0.97004 * 119.99634 * 180.02562 * 12 11 9 30 30 H 1.08999 * 109.47225 * 161.97107 * 17 7 6 31 31 H 1.09004 * 109.47285 * 70.38650 * 18 17 7 32 32 H 1.09006 * 109.47174 * 190.38337 * 18 17 7 33 33 H 1.08996 * 109.47279 * 310.38477 * 18 17 7 34 34 H 1.09010 * 109.46917 * 60.00229 * 19 17 7 35 35 H 1.08996 * 109.47150 * 179.97438 * 19 17 7 36 36 H 1.08999 * 109.47161 * 300.00178 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6479 0.0052 5 6 3.5766 -0.6546 -0.0008 6 6 4.8005 -1.5338 -0.0014 7 7 5.3741 -1.5756 1.3503 8 6 6.7847 -1.9840 1.3112 9 6 7.4044 -1.7806 2.6697 10 1 6.8097 -1.3877 3.4811 11 6 8.7302 -2.0972 2.8770 12 7 9.2709 -1.9201 4.0627 13 14 9.7586 -2.7775 1.4738 14 1 10.3983 -1.6561 0.7399 15 1 10.8084 -3.6750 2.0192 16 1 8.8864 -3.5422 0.5465 17 6 4.5941 -2.4600 2.2261 18 6 3.3253 -1.7366 2.6819 19 6 4.2110 -3.7278 1.4601 20 8 2.3075 -1.0839 -0.0006 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3632 -0.8898 -0.5142 24 1 1.9821 2.1113 0.0005 25 1 5.5371 -1.1307 -0.6964 26 1 4.5236 -2.5419 -0.3099 27 1 6.8506 -3.0366 1.0355 28 1 7.3172 -1.3817 0.5751 29 1 10.2038 -2.1425 4.2085 30 1 5.1920 -2.7284 3.0970 31 1 2.6435 -1.6321 1.8379 32 1 2.8416 -2.3132 3.4704 33 1 3.5868 -0.7491 3.0622 34 1 5.1150 -4.2433 1.1354 35 1 3.6325 -4.3843 2.1101 36 1 3.6130 -3.4594 0.5892 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072686173.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:48 Heat of formation + Delta-G solvation = 11.098744 kcal Electronic energy + Delta-G solvation = -17577.792860 eV Core-core repulsion = 14870.364358 eV Total energy + Delta-G solvation = -2707.428502 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.29756 -39.54893 -35.66925 -34.89087 -33.59566 -32.75460 -30.70116 -28.20630 -27.94621 -25.80738 -23.70007 -23.18151 -22.09631 -20.56820 -18.86738 -17.95646 -17.72507 -17.02356 -16.32104 -16.02270 -15.46372 -15.09593 -14.78446 -14.56045 -14.37635 -14.03380 -13.81781 -13.61642 -13.45739 -13.13378 -12.87853 -12.60459 -12.38935 -12.31965 -12.18205 -11.99114 -11.87549 -11.56005 -11.41337 -11.33953 -10.75516 -9.52289 -9.05907 -8.25837 -6.29291 0.50718 1.38143 1.39671 1.49662 1.68221 1.82768 2.36910 3.07277 3.16591 3.26458 3.90245 4.01731 4.10527 4.16595 4.29887 4.36287 4.44967 4.55539 4.67150 4.68588 4.72612 4.77054 4.83968 4.93686 4.99022 5.11643 5.12150 5.25383 5.33663 5.40394 5.42026 5.54056 5.96871 6.31579 6.59751 6.76214 6.90811 7.33380 8.91052 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039474 B = 0.006329 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.151855 B = 4422.985314 C = 4558.860305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.052 4.052 3 C -0.068 4.068 4 N -0.503 5.503 5 C 0.202 3.798 6 C 0.132 3.868 7 N -0.534 5.534 8 C 0.175 3.825 9 C -0.513 4.513 10 H 0.032 0.968 11 C 0.008 3.992 12 N -0.950 5.950 13 Si 0.948 3.052 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.242 1.242 17 C 0.074 3.926 18 C -0.137 4.137 19 C -0.174 4.174 20 O -0.208 6.208 21 H 0.094 0.906 22 H 0.114 0.886 23 H 0.086 0.914 24 H 0.202 0.798 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.005 0.995 28 H 0.032 0.968 29 H 0.266 0.734 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.770 -0.905 -11.273 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.206 4.206 4 N -0.233 5.233 5 C -0.005 4.005 6 C 0.004 3.996 7 N -0.259 5.259 8 C 0.048 3.952 9 C -0.552 4.552 10 H 0.051 0.949 11 C -0.189 4.189 12 N -0.591 5.591 13 Si 0.771 3.229 14 H -0.193 1.193 15 H -0.209 1.209 16 H -0.166 1.166 17 C -0.034 4.034 18 C -0.195 4.195 19 C -0.232 4.232 20 O -0.095 6.095 21 H 0.112 0.888 22 H 0.133 0.867 23 H 0.105 0.895 24 H 0.219 0.781 25 H 0.127 0.873 26 H 0.110 0.890 27 H 0.023 0.977 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.093 -0.130 -10.976 20.314 hybrid contribution 0.489 -0.992 -0.101 1.111 sum -16.604 -1.122 -11.077 19.992 Atomic orbital electron populations 1.20479 0.80703 1.05811 1.04885 1.24269 0.96616 0.83938 1.05668 1.23567 0.87302 1.01831 1.07928 1.70420 1.24553 1.10245 1.18033 1.26054 0.84146 0.90140 1.00172 1.20631 0.88973 0.97107 0.92917 1.61854 1.03073 1.52835 1.08111 1.19972 0.84793 0.94190 0.96221 1.21184 0.95836 1.42077 0.96076 0.94939 1.25845 0.98976 0.95685 0.98392 1.70062 1.14013 1.50555 1.24453 0.85709 0.78648 0.79074 0.79485 1.19293 1.20915 1.16576 1.21666 0.94218 0.91194 0.96316 1.21921 0.96686 0.99484 1.01380 1.22364 1.01700 0.97774 1.01371 1.84396 1.17814 1.37413 1.69906 0.88765 0.86713 0.89470 0.78108 0.87349 0.89007 0.97732 0.95015 0.92480 0.91832 0.91675 0.91311 0.95147 0.92897 0.90622 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.43 71.24 0.74 -0.03 16 2 C -0.05 -1.24 7.37 24.79 0.18 -1.06 16 3 C -0.07 -1.89 11.80 83.39 0.98 -0.90 16 4 N -0.50 -18.16 11.29 -303.82 -3.43 -21.60 16 5 C 0.20 6.84 6.06 88.34 0.54 7.38 16 6 C 0.13 4.51 5.21 85.56 0.45 4.96 16 7 N -0.53 -22.51 4.37 -880.06 -3.84 -26.35 16 8 C 0.17 8.26 3.70 85.56 0.32 8.58 16 9 C -0.51 -29.91 8.76 25.60 0.22 -29.69 16 10 H 0.03 2.15 7.59 -2.91 -0.02 2.13 16 11 C 0.01 0.47 5.47 84.66 0.46 0.93 16 12 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 13 Si 0.95 43.60 27.47 68.60 1.88 45.49 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 17 C 0.07 2.87 2.70 44.92 0.12 2.99 16 18 C -0.14 -4.79 8.59 71.98 0.62 -4.17 16 19 C -0.17 -5.28 8.17 71.98 0.59 -4.69 16 20 O -0.21 -6.05 8.55 -3.72 -0.03 -6.08 16 21 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 22 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.20 4.16 8.06 -2.91 -0.02 4.13 16 25 H 0.11 3.57 7.71 -2.39 -0.02 3.55 16 26 H 0.09 2.67 5.14 -2.39 -0.01 2.66 16 27 H 0.01 0.23 6.17 -2.39 -0.01 0.21 16 28 H 0.03 1.48 7.25 -2.39 -0.02 1.46 16 29 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.06 2.93 6.58 -2.39 -0.02 2.92 16 31 H 0.06 2.10 4.41 -2.38 -0.01 2.09 16 32 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.66 7.19 -2.38 -0.02 1.64 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.07 1.93 6.03 -2.39 -0.01 1.92 16 Total: -1.00 -72.34 287.92 1.11 -71.23 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.01 Total: 12.70 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 5.22 Total: -15.69 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -6.97 Total: -107.64 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.03 Total: -6.08 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.49 kcal Total: -72.34 1.11 -71.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072686173.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.330 kcal (2) G-P(sol) polarization free energy of solvation -72.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds