Wall clock time and date at job start Sun Mar 29 2020 22:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46912 * 2 1 4 4 N 1.46502 * 109.46923 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00146 * 275.32546 * 4 3 2 6 6 H 1.07998 * 120.00317 * 37.61846 * 5 4 3 7 7 C 1.38819 * 119.99776 * 217.62112 * 5 4 3 8 8 N 1.31621 * 120.00146 * 21.30412 * 7 5 4 9 9 Si 1.86799 * 119.99660 * 201.30640 * 7 5 4 10 10 H 1.48502 * 109.47485 * 59.99903 * 9 7 5 11 11 H 1.48503 * 109.46859 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47155 * 299.99683 * 9 7 5 13 13 C 1.46499 * 119.99614 * 95.32258 * 4 3 2 14 14 C 1.50699 * 109.47719 * 269.99835 * 13 4 3 15 15 N 1.30252 * 125.61656 * 89.68914 * 14 13 4 16 16 C 1.34472 * 108.70394 * 180.26759 * 15 14 13 17 17 C 1.34335 * 107.66593 * 0.02562 * 16 15 14 18 18 C 1.50705 * 126.44140 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.46827 * 89.99900 * 18 17 16 20 20 O 1.33965 * 125.62341 * 270.00645 * 14 13 4 21 21 H 1.09004 * 109.46644 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46822 * 299.99066 * 1 2 3 23 23 H 1.08991 * 109.47364 * 59.99650 * 1 2 3 24 24 H 1.08999 * 109.47003 * 240.00170 * 2 1 3 25 25 H 1.08991 * 109.47364 * 120.00350 * 2 1 3 26 26 H 1.08999 * 109.46615 * 60.00807 * 3 2 1 27 27 H 1.08991 * 109.47392 * 300.00333 * 3 2 1 28 28 H 0.96992 * 119.99713 * 180.02562 * 8 7 5 29 29 H 1.09009 * 109.46843 * 149.99882 * 13 4 3 30 30 H 1.09004 * 109.47294 * 30.00608 * 13 4 3 31 31 H 1.07998 * 126.17066 * 180.02562 * 16 15 14 32 32 H 1.08998 * 109.46742 * 209.99513 * 18 17 16 33 33 H 1.08996 * 109.46966 * 329.99897 * 18 17 16 34 34 H 1.08996 * 109.47734 * 299.99835 * 19 18 17 35 35 H 1.08998 * 109.47100 * 59.99765 * 19 18 17 36 36 H 1.09002 * 109.47124 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3323 1.1798 6 1 3.8190 0.6859 1.9614 7 6 5.3620 2.0514 1.3719 8 7 5.6026 3.1234 0.6472 9 14 6.5973 1.4974 2.6590 10 1 7.0668 0.1259 2.3366 11 1 7.7545 2.4281 2.6672 12 1 5.9526 1.4982 3.9967 13 6 4.2369 1.5604 -1.2642 14 6 4.4879 0.1862 -1.8296 15 7 3.6943 -0.4587 -2.6364 16 6 4.2457 -1.6515 -2.9215 17 6 5.4136 -1.7288 -2.2623 18 6 6.3782 -2.8865 -2.2827 19 6 7.3819 -2.6940 -3.4213 20 8 5.5611 -0.5759 -1.5806 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9562 0.8901 27 1 1.6766 1.9563 -0.8899 28 1 6.4215 3.6256 0.7812 29 1 5.1894 2.0600 -1.0871 30 1 3.6475 2.1427 -1.9726 31 1 3.8254 -2.4107 -3.5644 32 1 6.9108 -2.9324 -1.3327 33 1 5.8282 -3.8149 -2.4362 34 1 6.8495 -2.6480 -4.3712 35 1 7.9318 -1.7655 -3.2677 36 1 8.0799 -3.5311 -3.4358 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075747911.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:00 Heat of formation + Delta-G solvation = 22.786250 kcal Electronic energy + Delta-G solvation = -17497.679228 eV Core-core repulsion = 14790.757534 eV Total energy + Delta-G solvation = -2706.921694 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.43193 -36.28713 -33.96118 -33.79355 -32.94807 -30.99092 -28.94036 -26.16956 -25.58039 -23.33502 -22.23944 -21.11959 -20.31240 -19.93618 -17.00217 -16.11488 -15.73395 -14.96886 -14.43360 -14.32209 -14.21098 -13.81017 -13.19564 -13.17178 -12.74609 -12.40435 -12.27362 -11.59550 -11.54939 -11.41543 -11.05879 -11.01118 -10.76863 -10.69162 -10.59474 -10.43191 -10.20215 -10.10037 -9.74629 -9.60398 -8.58865 -7.91958 -6.77018 -5.95135 -3.52380 2.23895 3.31900 3.38561 3.42484 3.46882 3.54679 4.40901 4.94349 5.05477 5.22908 5.28642 5.32597 5.44175 5.66581 5.74019 5.76507 5.82425 5.83890 5.96186 6.10978 6.19333 6.31842 6.48932 6.52571 6.59949 6.66857 6.69120 6.84527 7.00586 7.09911 7.24076 7.33301 7.73331 8.36412 8.65333 9.01598 9.64196 10.21357 11.07189 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.010865 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.929875 B = 2576.568196 C = 3818.606365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.148 4.148 3 C 0.150 3.850 4 N -0.565 5.565 5 C -0.268 4.268 6 H 0.063 0.937 7 C 0.020 3.980 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.279 1.279 13 C 0.222 3.778 14 C 0.214 3.786 15 N -0.511 5.511 16 C -0.046 4.046 17 C -0.082 4.082 18 C -0.032 4.032 19 C -0.148 4.148 20 O -0.193 6.193 21 H 0.041 0.959 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.260 0.740 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.167 0.833 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -8.165 -5.573 9.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.188 4.188 3 C 0.024 3.976 4 N -0.283 5.283 5 C -0.398 4.398 6 H 0.080 0.920 7 C -0.181 4.181 8 N -0.524 5.524 9 Si 0.729 3.271 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.205 1.205 13 C 0.092 3.908 14 C 0.005 3.995 15 N -0.240 5.240 16 C -0.185 4.185 17 C -0.136 4.136 18 C -0.070 4.070 19 C -0.205 4.205 20 O -0.079 6.079 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.135 0.865 30 H 0.092 0.908 31 H 0.184 0.816 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.029 -7.723 -5.720 9.666 hybrid contribution 1.252 -0.888 0.828 1.744 sum 0.223 -8.611 -4.893 9.907 Atomic orbital electron populations 1.21686 0.97253 1.00276 1.00929 1.22122 0.93938 1.00836 1.01882 1.20987 0.84024 0.93360 0.99245 1.43757 0.99993 1.83187 1.01397 1.18996 1.06245 1.21017 0.93522 0.91959 1.25202 1.00506 0.94275 0.98155 1.69938 1.25846 1.14406 1.42214 0.86411 0.80874 0.78441 0.81378 1.20659 1.21339 1.20483 1.19813 1.01761 0.82548 0.86685 1.29266 0.79906 0.98166 0.92156 1.70457 1.30833 1.05582 1.17163 1.22846 0.94299 0.97043 1.04330 1.23222 1.00206 0.89875 1.00336 1.19875 0.94748 0.91991 1.00408 1.21780 0.98598 1.02122 0.98007 1.84522 1.43144 1.24024 1.56198 0.93978 0.93379 0.93289 0.91794 0.93032 0.93235 0.94135 0.93030 0.86452 0.90781 0.81578 0.90427 0.89489 0.92387 0.92321 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.15 -2.94 6.23 -26.73 -0.17 -3.10 16 3 C 0.15 3.24 5.72 -4.04 -0.02 3.21 16 4 N -0.56 -14.08 2.42 -174.61 -0.42 -14.50 16 5 C -0.27 -7.28 9.45 -15.06 -0.14 -7.42 16 6 H 0.06 1.71 7.92 -52.49 -0.42 1.29 16 7 C 0.02 0.54 4.96 -17.43 -0.09 0.45 16 8 N -0.88 -24.51 11.47 55.49 0.64 -23.87 16 9 Si 0.90 21.43 29.60 -169.99 -5.03 16.40 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 C 0.22 5.31 5.95 -5.19 -0.03 5.28 16 14 C 0.21 4.93 7.78 -12.95 -0.10 4.83 16 15 N -0.51 -11.00 10.31 -11.10 -0.11 -11.11 16 16 C -0.05 -0.86 11.80 -17.77 -0.21 -1.07 16 17 C -0.08 -1.52 6.64 -35.68 -0.24 -1.76 16 18 C -0.03 -0.44 6.49 -27.88 -0.18 -0.62 16 19 C -0.15 -1.71 9.89 37.16 0.37 -1.34 16 20 O -0.19 -4.41 10.77 5.39 0.06 -4.35 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 1.37 6.98 -51.93 -0.36 1.00 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 27 H 0.04 0.83 7.83 -51.93 -0.41 0.42 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.12 3.08 5.52 -51.92 -0.29 2.79 16 30 H 0.07 1.66 7.86 -51.93 -0.41 1.25 16 31 H 0.17 2.46 8.06 -52.49 -0.42 2.04 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -29.42 304.56 -6.39 -35.81 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.66 Total: 0.50 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.44 Total: -3.46 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.10 Total: -49.48 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: 0.06 Total: -4.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.42 -6.39 -35.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075747911.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.597 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds