Wall clock time and date at job start Sun Mar 29 2020 22:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46912 * 2 1 4 4 N 1.46502 * 109.46923 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00146 * 275.32546 * 4 3 2 6 6 H 1.07998 * 120.00317 * 37.61846 * 5 4 3 7 7 C 1.38819 * 119.99776 * 217.62112 * 5 4 3 8 8 N 1.31621 * 120.00146 * 21.30412 * 7 5 4 9 9 Si 1.86799 * 119.99660 * 201.30640 * 7 5 4 10 10 H 1.48502 * 109.47485 * 59.99903 * 9 7 5 11 11 H 1.48503 * 109.46859 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47155 * 299.99683 * 9 7 5 13 13 C 1.46499 * 119.99614 * 95.32258 * 4 3 2 14 14 C 1.50699 * 109.47719 * 269.99835 * 13 4 3 15 15 N 1.30252 * 125.61656 * 89.68914 * 14 13 4 16 16 C 1.34472 * 108.70394 * 180.26759 * 15 14 13 17 17 C 1.34335 * 107.66593 * 0.02562 * 16 15 14 18 18 C 1.50705 * 126.44140 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.46827 * 89.99900 * 18 17 16 20 20 O 1.33965 * 125.62341 * 270.00645 * 14 13 4 21 21 H 1.09004 * 109.46644 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46822 * 299.99066 * 1 2 3 23 23 H 1.08991 * 109.47364 * 59.99650 * 1 2 3 24 24 H 1.08999 * 109.47003 * 240.00170 * 2 1 3 25 25 H 1.08991 * 109.47364 * 120.00350 * 2 1 3 26 26 H 1.08999 * 109.46615 * 60.00807 * 3 2 1 27 27 H 1.08991 * 109.47392 * 300.00333 * 3 2 1 28 28 H 0.96992 * 119.99713 * 180.02562 * 8 7 5 29 29 H 1.09009 * 109.46843 * 149.99882 * 13 4 3 30 30 H 1.09004 * 109.47294 * 30.00608 * 13 4 3 31 31 H 1.07998 * 126.17066 * 180.02562 * 16 15 14 32 32 H 1.08998 * 109.46742 * 209.99513 * 18 17 16 33 33 H 1.08996 * 109.46966 * 329.99897 * 18 17 16 34 34 H 1.08996 * 109.47734 * 299.99835 * 19 18 17 35 35 H 1.08998 * 109.47100 * 59.99765 * 19 18 17 36 36 H 1.09002 * 109.47124 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3323 1.1798 6 1 3.8190 0.6859 1.9614 7 6 5.3620 2.0514 1.3719 8 7 5.6026 3.1234 0.6472 9 14 6.5973 1.4974 2.6590 10 1 7.0668 0.1259 2.3366 11 1 7.7545 2.4281 2.6672 12 1 5.9526 1.4982 3.9967 13 6 4.2369 1.5604 -1.2642 14 6 4.4879 0.1862 -1.8296 15 7 3.6943 -0.4587 -2.6364 16 6 4.2457 -1.6515 -2.9215 17 6 5.4136 -1.7288 -2.2623 18 6 6.3782 -2.8865 -2.2827 19 6 7.3819 -2.6940 -3.4213 20 8 5.5611 -0.5759 -1.5806 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9562 0.8901 27 1 1.6766 1.9563 -0.8899 28 1 6.4215 3.6256 0.7812 29 1 5.1894 2.0600 -1.0871 30 1 3.6475 2.1427 -1.9726 31 1 3.8254 -2.4107 -3.5644 32 1 6.9108 -2.9324 -1.3327 33 1 5.8282 -3.8149 -2.4362 34 1 6.8495 -2.6480 -4.3712 35 1 7.9318 -1.7655 -3.2677 36 1 8.0799 -3.5311 -3.4358 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075747911.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:00 Heat of formation + Delta-G solvation = 4.767984 kcal Electronic energy + Delta-G solvation = -17498.460559 eV Core-core repulsion = 14790.757534 eV Total energy + Delta-G solvation = -2707.703024 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.05526 -38.11675 -35.47398 -35.12542 -34.68335 -32.83230 -30.51906 -27.72912 -27.40361 -24.66883 -23.89072 -22.69113 -21.94801 -21.59954 -18.93512 -17.74900 -17.40096 -16.82574 -15.98955 -15.90518 -15.54579 -15.43239 -14.90114 -14.77717 -14.03616 -13.90994 -13.45255 -13.33099 -13.18216 -12.77202 -12.61681 -12.59381 -12.42584 -12.28404 -12.18385 -12.06996 -12.01411 -11.90247 -11.38981 -11.23479 -10.61189 -9.44332 -8.74686 -7.97867 -5.59975 0.66776 1.41484 1.45406 1.51600 1.86051 2.02757 2.44742 3.11966 3.49619 3.65037 3.87013 4.12106 4.23578 4.25163 4.34040 4.38539 4.59500 4.59977 4.68330 4.80743 4.90707 4.94879 4.96018 5.09513 5.17092 5.22089 5.27754 5.30448 5.38166 5.40317 5.57617 5.60945 5.61859 6.35125 6.99903 7.02468 7.66591 8.21506 9.01370 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.010865 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.929875 B = 2576.568196 C = 3818.606365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.281 4.281 6 H 0.053 0.947 7 C -0.021 4.021 8 N -0.907 5.907 9 Si 0.955 3.045 10 H -0.285 1.285 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.230 3.770 14 C 0.186 3.814 15 N -0.511 5.511 16 C -0.057 4.057 17 C -0.078 4.078 18 C -0.033 4.033 19 C -0.143 4.143 20 O -0.222 6.222 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.259 0.741 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.207 0.793 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.871 -10.163 -6.183 11.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.175 4.175 3 C 0.023 3.977 4 N -0.300 5.300 5 C -0.411 4.411 6 H 0.070 0.930 7 C -0.220 4.220 8 N -0.549 5.549 9 Si 0.782 3.218 10 H -0.211 1.211 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.100 3.900 14 C -0.023 4.023 15 N -0.242 5.242 16 C -0.195 4.195 17 C -0.131 4.131 18 C -0.071 4.071 19 C -0.200 4.200 20 O -0.109 6.109 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.223 0.777 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.293 -9.729 -6.335 11.681 hybrid contribution 1.327 -0.359 0.927 1.658 sum 0.034 -10.088 -5.408 11.446 Atomic orbital electron populations 1.21615 0.93956 1.01716 1.01995 1.21947 0.96705 0.98833 1.00059 1.21088 0.82542 0.94716 0.99375 1.43908 1.01180 1.83744 1.01125 1.19105 1.06985 1.20714 0.94250 0.92981 1.25825 1.01773 0.94335 1.00080 1.70035 1.26106 1.15198 1.43558 0.85549 0.78955 0.77563 0.79692 1.21147 1.20954 1.19588 1.19470 1.00480 0.83411 0.86637 1.28726 0.80978 0.98403 0.94186 1.70400 1.30635 1.06753 1.16413 1.23474 0.94301 0.96779 1.04926 1.24277 1.01100 0.89297 0.98462 1.20204 0.94615 0.91126 1.01135 1.21762 0.98488 1.02397 0.97367 1.84488 1.43473 1.25683 1.57243 0.92352 0.92367 0.92182 0.93325 0.95021 0.93798 0.93125 0.93185 0.89124 0.90105 0.77668 0.90734 0.86007 0.91677 0.94379 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.91 71.98 0.71 -3.33 16 2 C -0.14 -5.33 6.23 30.60 0.19 -5.14 16 3 C 0.15 6.44 5.72 86.38 0.49 6.93 16 4 N -0.58 -29.61 2.42 -706.34 -1.71 -31.32 16 5 C -0.28 -15.59 9.45 84.04 0.79 -14.79 16 6 H 0.05 2.93 7.92 -2.91 -0.02 2.91 16 7 C -0.02 -1.17 4.96 84.86 0.42 -0.75 16 8 N -0.91 -51.61 11.47 21.65 0.25 -51.36 16 9 Si 0.96 44.62 29.60 68.60 2.03 46.65 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 C 0.23 11.33 5.95 85.63 0.51 11.84 16 14 C 0.19 8.68 7.78 88.34 0.69 9.37 16 15 N -0.51 -21.70 10.31 -303.84 -3.13 -24.83 16 16 C -0.06 -1.98 11.80 83.40 0.98 -1.00 16 17 C -0.08 -2.78 6.64 24.80 0.16 -2.62 16 18 C -0.03 -0.81 6.49 29.85 0.19 -0.62 16 19 C -0.14 -2.91 9.89 71.98 0.71 -2.19 16 20 O -0.22 -10.26 10.77 -3.62 -0.04 -10.30 16 21 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 2.05 6.98 -2.39 -0.02 2.03 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 26 H 0.04 1.93 8.08 -2.39 -0.02 1.91 16 27 H 0.05 2.07 7.83 -2.39 -0.02 2.05 16 28 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.09 4.97 5.52 -2.38 -0.01 4.96 16 30 H 0.08 3.73 7.86 -2.39 -0.02 3.71 16 31 H 0.21 5.32 8.06 -2.91 -0.02 5.29 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -64.44 304.56 4.31 -60.13 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.04 Total: 13.32 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.87 Total: -2.29 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -4.59 Total: -107.51 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.04 Total: -10.30 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.44 4.31 -60.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075747911.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.897 kcal (2) G-P(sol) polarization free energy of solvation -64.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds