Wall clock time and date at job start Sun Mar 29 2020 22:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30173 * 126.79905 * 2 1 4 4 O 1.20921 * 111.60761 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.56080 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.77453 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44954 * 359.74996 * 5 4 3 8 8 C 1.50696 * 128.00853 * 180.23586 * 7 5 4 9 9 H 1.08999 * 109.47242 * 165.16049 * 8 7 5 10 10 C 1.53004 * 109.47278 * 285.16495 * 8 7 5 11 11 N 1.46899 * 109.47191 * 45.16451 * 8 7 5 12 12 C 1.46902 * 111.00239 * 155.00171 * 11 8 7 13 13 C 1.52998 * 109.47247 * 180.02562 * 12 11 8 14 14 C 1.50700 * 109.47210 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99771 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00066 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00031 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99995 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47590 * 89.99641 * 18 16 14 20 20 H 1.48502 * 109.47086 * 210.00190 * 18 16 14 21 21 H 1.48505 * 109.46975 * 329.99440 * 18 16 14 22 22 H 1.08999 * 109.46995 * 90.02638 * 1 2 3 23 23 H 1.08994 * 109.46790 * 210.02325 * 1 2 3 24 24 H 1.08997 * 109.47305 * 330.02766 * 1 2 3 25 25 H 1.09002 * 109.47213 * 359.97438 * 6 5 4 26 26 H 1.09003 * 109.47326 * 119.97359 * 6 5 4 27 27 H 1.09001 * 109.47446 * 239.97671 * 6 5 4 28 28 H 1.09007 * 109.46783 * 59.99939 * 10 8 7 29 29 H 1.08997 * 109.46913 * 180.02562 * 10 8 7 30 30 H 1.08997 * 109.46811 * 300.00500 * 10 8 7 31 31 H 1.00905 * 111.00008 * 278.95367 * 11 8 7 32 32 H 1.08998 * 109.46772 * 299.99600 * 12 11 8 33 33 H 1.08995 * 109.47091 * 59.99822 * 12 11 8 34 34 H 1.09003 * 109.47429 * 299.99851 * 13 12 11 35 35 H 1.08995 * 109.47307 * 59.99848 * 13 12 11 36 36 H 0.96998 * 119.99538 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7255 0.0005 5 6 3.6025 -0.6067 0.0015 6 6 4.9022 -1.3694 0.0029 7 6 2.3540 -1.1320 0.0072 8 6 1.9592 -2.5863 0.0154 9 1 0.9059 -2.6753 0.2817 10 6 2.1862 -3.1843 -1.3745 11 7 2.7757 -3.3098 0.9991 12 6 2.0831 -4.5152 1.4737 13 6 2.9623 -5.2400 2.4947 14 6 2.2515 -6.4763 2.9820 15 1 1.2709 -6.7208 2.6012 16 6 2.8535 -7.2957 3.9132 17 7 4.0482 -6.9987 4.3758 18 14 1.9727 -8.8285 4.5167 19 1 2.3246 -9.9776 3.6444 20 1 2.3878 -9.1209 5.9122 21 1 0.5051 -8.6055 4.4734 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3634 0.8902 0.5134 25 1 5.7357 -0.6670 0.0025 26 1 4.9552 -1.9955 0.8935 27 1 4.9560 -1.9974 -0.8865 28 1 3.2395 -3.0952 -1.6406 29 1 1.9002 -4.2361 -1.3686 30 1 1.5804 -2.6474 -2.1044 31 1 3.6815 -3.5395 0.6183 32 1 1.1407 -4.2319 1.9425 33 1 1.8850 -5.1763 0.6300 34 1 3.9050 -5.5233 2.0264 35 1 3.1600 -4.5788 3.3383 36 1 4.4715 -7.5751 5.0312 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086110519.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:38 Heat of formation + Delta-G solvation = 39.247666 kcal Electronic energy + Delta-G solvation = -16911.918145 eV Core-core repulsion = 14205.710272 eV Total energy + Delta-G solvation = -2706.207873 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.74865 -37.47949 -34.57412 -33.55434 -32.59257 -30.67314 -28.61173 -28.03943 -27.48959 -24.50957 -23.26280 -21.01547 -20.55060 -19.68349 -17.49769 -16.83636 -16.35051 -15.15916 -14.60625 -14.42797 -14.32942 -13.54975 -13.45444 -13.33806 -13.17777 -12.82382 -12.56916 -12.42324 -12.23956 -12.22143 -11.80614 -11.18753 -11.04549 -10.95983 -10.77358 -10.54639 -10.08683 -9.75608 -9.44966 -9.19412 -8.89790 -8.38129 -7.89903 -6.02478 -4.05140 1.63507 2.34777 3.26412 3.30197 3.36829 3.39863 4.29399 4.39537 4.55276 4.66847 5.00934 5.10732 5.26679 5.33350 5.33830 5.41604 5.46015 5.53448 5.61689 5.63096 5.84194 5.91590 5.96175 6.05688 6.10928 6.29505 6.30658 6.41922 6.92563 7.40728 7.67486 7.76854 7.88905 8.04156 8.39914 8.42443 9.01986 9.58945 11.08932 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036868 B = 0.004825 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.288268 B = 5802.145754 C = 6070.299855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.022 3.978 3 N -0.376 5.376 4 O 0.089 5.911 5 C -0.018 4.018 6 C -0.077 4.077 7 C -0.178 4.178 8 C 0.159 3.841 9 H 0.087 0.913 10 C -0.177 4.177 11 N -0.685 5.685 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.522 4.522 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.337 0.663 32 H 0.059 0.941 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.025 0.975 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 10.719 -11.285 15.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 N -0.083 5.083 4 O 0.025 5.975 5 C -0.082 4.082 6 C -0.134 4.134 7 C -0.183 4.183 8 C 0.047 3.953 9 H 0.105 0.895 10 C -0.236 4.236 11 N -0.315 5.315 12 C -0.061 4.061 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.122 0.878 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.156 0.844 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.516 12.354 -10.615 16.481 hybrid contribution -0.425 -2.217 -0.345 2.284 sum -2.941 10.137 -10.960 15.216 Atomic orbital electron populations 1.20144 0.86335 1.03761 1.02966 1.23370 0.98709 0.88672 1.02956 1.73785 0.89390 1.24039 1.21069 1.84747 1.21543 1.22916 1.68260 1.24164 0.98414 0.83160 1.02415 1.20449 0.89680 0.98628 1.04674 1.20912 0.91544 0.97040 1.08797 1.19669 0.98381 0.86483 0.90725 0.89529 1.22467 1.02052 1.01454 0.97610 1.60682 1.05843 1.26719 1.38305 1.22205 0.98364 0.87931 0.97631 1.19064 0.94358 0.94271 0.93503 1.21159 1.03160 1.07963 1.23808 0.92762 1.24992 0.94938 0.98011 0.96344 1.69969 1.14438 1.38204 1.30602 0.86596 0.79975 0.83348 0.78079 1.20697 1.21187 1.19888 0.90489 0.89954 0.90749 0.90366 0.87785 0.89706 0.92433 0.91691 0.92434 0.84444 0.92285 0.96340 0.96803 0.95646 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.34 36.01 0.37 -0.44 16 2 C 0.02 0.31 7.33 -82.10 -0.60 -0.29 16 3 N -0.38 -5.84 12.07 33.42 0.40 -5.44 16 4 O 0.09 1.32 11.20 17.17 0.19 1.52 16 5 C -0.02 -0.24 7.44 -35.30 -0.26 -0.51 16 6 C -0.08 -0.81 9.25 36.01 0.33 -0.47 16 7 C -0.18 -2.54 5.25 -104.43 -0.55 -3.08 16 8 C 0.16 2.22 2.93 -68.86 -0.20 2.02 16 9 H 0.09 1.22 7.00 -51.93 -0.36 0.86 16 10 C -0.18 -2.11 9.14 37.16 0.34 -1.77 16 11 N -0.68 -11.39 5.61 -107.95 -0.61 -11.99 16 12 C 0.07 1.32 5.42 -3.82 -0.02 1.30 16 13 C 0.03 0.64 5.23 -27.88 -0.15 0.50 16 14 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 18 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.08 0.84 7.43 -51.93 -0.39 0.45 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.10 1.21 6.93 -51.93 -0.36 0.85 16 27 H 0.08 0.75 7.28 -51.93 -0.38 0.37 16 28 H 0.06 0.64 7.27 -51.93 -0.38 0.26 16 29 H 0.06 0.80 7.45 -51.93 -0.39 0.42 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.34 5.23 6.68 -39.29 -0.26 4.97 16 32 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 33 H 0.02 0.36 7.44 -51.93 -0.39 -0.03 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -30.94 300.38 -6.31 -37.25 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.40 Total: -0.43 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -1.15 Total: -15.99 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.53 Total: -43.21 kcal Atomic # 8 Polarization: 1.32 SS G_CDS: 0.19 Total: 1.52 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.94 -6.31 -37.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086110519.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.497 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds