Wall clock time and date at job start Sun Mar 29 2020 22:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30173 * 126.79905 * 2 1 4 4 O 1.20921 * 111.60761 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.56080 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.77453 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44954 * 359.74996 * 5 4 3 8 8 C 1.50696 * 128.00853 * 180.23586 * 7 5 4 9 9 H 1.08999 * 109.47242 * 165.16049 * 8 7 5 10 10 C 1.53004 * 109.47278 * 285.16495 * 8 7 5 11 11 N 1.46899 * 109.47191 * 45.16451 * 8 7 5 12 12 C 1.46902 * 111.00239 * 155.00171 * 11 8 7 13 13 C 1.52998 * 109.47247 * 180.02562 * 12 11 8 14 14 C 1.50700 * 109.47210 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99771 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00066 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00031 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99995 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47590 * 89.99641 * 18 16 14 20 20 H 1.48502 * 109.47086 * 210.00190 * 18 16 14 21 21 H 1.48505 * 109.46975 * 329.99440 * 18 16 14 22 22 H 1.08999 * 109.46995 * 90.02638 * 1 2 3 23 23 H 1.08994 * 109.46790 * 210.02325 * 1 2 3 24 24 H 1.08997 * 109.47305 * 330.02766 * 1 2 3 25 25 H 1.09002 * 109.47213 * 359.97438 * 6 5 4 26 26 H 1.09003 * 109.47326 * 119.97359 * 6 5 4 27 27 H 1.09001 * 109.47446 * 239.97671 * 6 5 4 28 28 H 1.09007 * 109.46783 * 59.99939 * 10 8 7 29 29 H 1.08997 * 109.46913 * 180.02562 * 10 8 7 30 30 H 1.08997 * 109.46811 * 300.00500 * 10 8 7 31 31 H 1.00905 * 111.00008 * 278.95367 * 11 8 7 32 32 H 1.08998 * 109.46772 * 299.99600 * 12 11 8 33 33 H 1.08995 * 109.47091 * 59.99822 * 12 11 8 34 34 H 1.09003 * 109.47429 * 299.99851 * 13 12 11 35 35 H 1.08995 * 109.47307 * 59.99848 * 13 12 11 36 36 H 0.96998 * 119.99538 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7255 0.0005 5 6 3.6025 -0.6067 0.0015 6 6 4.9022 -1.3694 0.0029 7 6 2.3540 -1.1320 0.0072 8 6 1.9592 -2.5863 0.0154 9 1 0.9059 -2.6753 0.2817 10 6 2.1862 -3.1843 -1.3745 11 7 2.7757 -3.3098 0.9991 12 6 2.0831 -4.5152 1.4737 13 6 2.9623 -5.2400 2.4947 14 6 2.2515 -6.4763 2.9820 15 1 1.2709 -6.7208 2.6012 16 6 2.8535 -7.2957 3.9132 17 7 4.0482 -6.9987 4.3758 18 14 1.9727 -8.8285 4.5167 19 1 2.3246 -9.9776 3.6444 20 1 2.3878 -9.1209 5.9122 21 1 0.5051 -8.6055 4.4734 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3634 0.8902 0.5134 25 1 5.7357 -0.6670 0.0025 26 1 4.9552 -1.9955 0.8935 27 1 4.9560 -1.9974 -0.8865 28 1 3.2395 -3.0952 -1.6406 29 1 1.9002 -4.2361 -1.3686 30 1 1.5804 -2.6474 -2.1044 31 1 3.6815 -3.5395 0.6183 32 1 1.1407 -4.2319 1.9425 33 1 1.8850 -5.1763 0.6300 34 1 3.9050 -5.5233 2.0264 35 1 3.1600 -4.5788 3.3383 36 1 4.4715 -7.5751 5.0312 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086110519.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:38 Heat of formation + Delta-G solvation = 19.799718 kcal Electronic energy + Delta-G solvation = -16912.761472 eV Core-core repulsion = 14205.710272 eV Total energy + Delta-G solvation = -2707.051199 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.83636 -38.73101 -35.94918 -35.05768 -34.04854 -32.14187 -29.58522 -29.55930 -28.48633 -26.17753 -24.62179 -22.48385 -21.95472 -20.76066 -18.60451 -18.46160 -17.94786 -16.63412 -16.27246 -15.76647 -15.66549 -14.71682 -14.44902 -14.35631 -14.20463 -14.15073 -13.90808 -13.60098 -13.47202 -13.21482 -13.05639 -12.89331 -12.82847 -12.43665 -12.10686 -11.96184 -11.80451 -11.37998 -11.24438 -10.77439 -10.53626 -10.00517 -9.25035 -8.17922 -6.28584 0.56260 1.27355 1.42552 1.43613 1.54481 2.24209 2.42641 3.16227 3.29493 3.31389 3.64540 3.90557 4.10685 4.28222 4.38348 4.48728 4.55095 4.64030 4.65681 4.69937 4.71732 4.75993 4.92949 4.94772 5.02196 5.10393 5.17395 5.21670 5.37783 5.49041 5.72249 5.82044 6.16519 6.29692 6.57126 6.89220 7.34748 7.40750 8.94073 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036868 B = 0.004825 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.288268 B = 5802.145754 C = 6070.299855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.018 3.982 3 N -0.401 5.401 4 O 0.077 5.923 5 C -0.016 4.016 6 C -0.077 4.077 7 C -0.196 4.196 8 C 0.163 3.837 9 H 0.087 0.913 10 C -0.171 4.171 11 N -0.691 5.691 12 C 0.087 3.913 13 C 0.032 3.968 14 C -0.542 4.542 15 H 0.061 0.939 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.963 3.037 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.264 1.264 22 H 0.097 0.903 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.343 0.657 32 H 0.055 0.945 33 H 0.028 0.972 34 H -0.005 1.005 35 H -0.008 1.008 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 10.169 -12.288 16.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.141 4.141 3 N -0.111 5.111 4 O 0.016 5.984 5 C -0.080 4.080 6 C -0.134 4.134 7 C -0.200 4.200 8 C 0.053 3.947 9 H 0.105 0.895 10 C -0.229 4.229 11 N -0.323 5.323 12 C -0.042 4.042 13 C -0.006 4.006 14 C -0.581 4.581 15 H 0.079 0.921 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.788 3.212 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.188 1.188 22 H 0.115 0.885 23 H 0.107 0.893 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.163 0.837 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.014 0.986 35 H 0.010 0.990 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.447 11.816 -11.638 16.940 hybrid contribution -0.098 -1.991 -0.039 1.994 sum -3.546 9.825 -11.677 15.667 Atomic orbital electron populations 1.20287 0.84261 1.04278 1.04435 1.23915 1.00184 0.88317 1.01704 1.73777 0.89773 1.24896 1.22624 1.84718 1.21498 1.23536 1.68635 1.24698 0.99450 0.82861 1.00970 1.20574 0.89022 0.98844 1.04957 1.21005 0.91978 0.97069 1.09990 1.19651 0.97778 0.86102 0.91179 0.89524 1.22395 1.03003 1.01129 0.96412 1.60535 1.06357 1.25258 1.40114 1.21784 0.97023 0.88867 0.96514 1.18913 0.94450 0.93612 0.93583 1.21620 1.03599 1.08877 1.23998 0.92105 1.25924 0.95657 1.01464 0.96536 1.70101 1.16079 1.39665 1.31301 0.85475 0.79079 0.79205 0.77442 1.19685 1.21000 1.18809 0.88472 0.89337 0.90290 0.88433 0.88945 0.87702 0.91530 0.92022 0.90977 0.83728 0.92630 0.95407 0.98628 0.99005 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.34 71.24 0.74 -0.77 16 2 C 0.02 0.48 7.33 43.58 0.32 0.80 16 3 N -0.40 -12.23 12.07 -49.55 -0.60 -12.83 16 4 O 0.08 2.25 11.20 71.61 0.80 3.05 16 5 C -0.02 -0.42 7.44 25.04 0.19 -0.23 16 6 C -0.08 -1.50 9.25 71.24 0.66 -0.84 16 7 C -0.20 -5.32 5.25 -19.74 -0.10 -5.42 16 8 C 0.16 4.31 2.93 44.17 0.13 4.44 16 9 H 0.09 2.29 7.00 -2.39 -0.02 2.27 16 10 C -0.17 -3.66 9.14 71.98 0.66 -3.01 16 11 N -0.69 -22.44 5.61 -495.46 -2.78 -25.22 16 12 C 0.09 3.40 5.42 86.30 0.47 3.87 16 13 C 0.03 1.64 5.23 29.85 0.16 1.79 16 14 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 15 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 16 C 0.00 0.12 5.46 84.65 0.46 0.59 16 17 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 18 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 22 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.09 1.65 7.43 -2.39 -0.02 1.63 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 25 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.09 2.08 6.93 -2.39 -0.02 2.06 16 27 H 0.10 1.63 7.28 -2.39 -0.02 1.61 16 28 H 0.07 1.30 7.27 -2.38 -0.02 1.28 16 29 H 0.06 1.38 7.45 -2.39 -0.02 1.36 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.34 10.38 6.68 -89.69 -0.60 9.79 16 32 H 0.06 2.21 8.06 -2.39 -0.02 2.19 16 33 H 0.03 1.04 7.44 -2.39 -0.02 1.02 16 34 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -66.13 300.38 4.11 -62.02 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.47 Total: 11.84 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 3.90 Total: -28.69 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -3.09 Total: -93.74 kcal Atomic # 8 Polarization: 2.25 SS G_CDS: 0.80 Total: 3.05 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -66.13 4.11 -62.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086110519.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.819 kcal (2) G-P(sol) polarization free energy of solvation -66.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds