Wall clock time and date at job start Sun Mar 29 2020 21:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00107 * 2 1 4 4 H 1.48499 * 109.46710 * 265.83389 * 3 2 1 5 5 H 1.48490 * 109.47252 * 25.83442 * 3 2 1 6 6 H 1.48504 * 109.46839 * 145.83771 * 3 2 1 7 7 C 1.37876 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00092 * 2.23463 * 7 2 1 9 9 C 1.50701 * 120.00194 * 182.24164 * 7 2 1 10 10 C 1.52998 * 115.55892 * 298.64814 * 9 7 2 11 11 N 1.46904 * 109.47110 * 327.03201 * 10 9 7 12 12 C 1.47841 * 110.99964 * 285.13287 * 11 10 9 13 13 C 1.54906 * 104.79711 * 213.63613 * 12 11 10 14 14 C 1.55136 * 101.65242 * 37.07353 * 13 12 11 15 15 C 1.47444 * 110.99859 * 164.29408 * 11 10 9 16 16 H 1.09005 * 109.88404 * 242.82891 * 15 11 10 17 17 C 1.50698 * 109.88799 * 3.84893 * 15 11 10 18 18 N 1.34778 * 120.00060 * 227.81821 * 17 15 11 19 19 O 1.21278 * 120.00458 * 47.82268 * 17 15 11 20 20 C 1.52998 * 117.49722 * 84.33445 * 9 7 2 21 21 C 1.53004 * 60.03184 * 107.50403 * 20 9 7 22 22 H 0.97005 * 119.99343 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47116 * 87.03207 * 10 9 7 24 24 H 1.09006 * 109.46966 * 207.02995 * 10 9 7 25 25 H 1.09007 * 110.37495 * 332.46692 * 12 11 10 26 26 H 1.09004 * 110.37281 * 94.80577 * 12 11 10 27 27 H 1.08998 * 110.99024 * 278.97636 * 13 12 11 28 28 H 1.09005 * 111.02417 * 155.17856 * 13 12 11 29 29 H 1.08999 * 110.70818 * 205.96295 * 14 13 12 30 30 H 1.08997 * 110.70810 * 82.72843 * 14 13 12 31 31 H 0.97005 * 119.99864 * 0.02562 * 18 17 15 32 32 H 0.96997 * 120.00218 * 180.02562 * 18 17 15 33 33 H 1.08993 * 117.50445 * 0.02562 * 20 9 7 34 34 H 1.09007 * 117.49406 * 215.00249 * 20 9 7 35 35 H 1.08999 * 117.49846 * 107.47534 * 21 20 9 36 36 H 1.08996 * 117.49478 * 252.47251 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5847 1.9955 -1.3964 5 1 1.4055 2.6765 0.6101 6 1 3.5000 1.4671 0.7862 7 6 2.0045 -1.1941 0.0005 8 1 1.4651 -2.1290 -0.0355 9 6 3.5106 -1.1946 0.0516 10 6 4.2112 -0.5101 -1.1238 11 7 3.4150 -0.6963 -2.3442 12 6 3.5467 -2.0766 -2.8573 13 6 3.4655 -1.9355 -4.3977 14 6 4.2302 -0.6060 -4.6313 15 6 3.8407 0.2398 -3.4008 16 1 3.0202 0.9113 -3.6539 17 6 5.0293 1.0378 -2.9302 18 7 5.0465 2.3765 -3.0856 19 8 5.9705 0.4755 -2.4117 20 6 4.1708 -1.0868 1.4276 21 6 4.1968 -2.4155 0.6695 22 1 -0.4849 0.8401 -0.0004 23 1 4.3134 0.5549 -0.9156 24 1 5.1990 -0.9494 -1.2638 25 1 4.5077 -2.5000 -2.5651 26 1 2.7298 -2.6977 -2.4895 27 1 2.4301 -1.8538 -4.7283 28 1 3.9670 -2.7667 -4.8935 29 1 3.8958 -0.1255 -5.5508 30 1 5.3060 -0.7793 -4.6551 31 1 4.2936 2.8264 -3.5000 32 1 5.8117 2.8901 -2.7830 33 1 3.5160 -1.0158 2.2959 34 1 5.1042 -0.5278 1.4955 35 1 5.1471 -2.7305 0.2384 36 1 3.5592 -3.2184 1.0394 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259266.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:43 Heat of formation + Delta-G solvation = 8.554208 kcal Electronic energy + Delta-G solvation = -18442.243398 eV Core-core repulsion = 15734.704557 eV Total energy + Delta-G solvation = -2707.538841 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33466 -37.40381 -36.18740 -33.54090 -31.87705 -31.18589 -28.95477 -25.99796 -24.57955 -22.46820 -21.44139 -20.79205 -19.62989 -18.82876 -17.12880 -16.94691 -15.94934 -15.20578 -15.02015 -14.69878 -14.20909 -13.74802 -13.30128 -13.14984 -12.71251 -12.27087 -11.92212 -11.71943 -11.50668 -11.30021 -10.73419 -10.69368 -10.61763 -10.44738 -10.10090 -9.93979 -9.71107 -9.53469 -9.28970 -8.87000 -8.39594 -8.21517 -7.41208 -5.88361 -3.83707 2.77516 3.39203 3.47617 3.55129 3.71221 4.56217 4.63702 4.81858 5.01535 5.06598 5.15604 5.41615 5.51373 5.67237 5.81796 5.95519 5.98261 6.08188 6.12818 6.16085 6.37958 6.51113 6.56144 6.58683 6.65286 6.80343 6.86764 6.91120 7.14282 7.27622 7.43414 7.66343 7.78793 8.04408 8.43107 8.71770 9.12136 9.79496 11.24586 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.012528 C = 0.011482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.314579 B = 2234.481120 C = 2437.968637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.090 3.910 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.306 1.306 6 H -0.268 1.268 7 C -0.450 4.450 8 H 0.072 0.928 9 C 0.004 3.996 10 C 0.078 3.922 11 N -0.464 5.464 12 C 0.054 3.946 13 C -0.127 4.127 14 C -0.126 4.126 15 C 0.047 3.953 16 H 0.096 0.904 17 C 0.507 3.493 18 N -0.857 5.857 19 O -0.543 6.543 20 C -0.199 4.199 21 C -0.187 4.187 22 H 0.259 0.741 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.040 0.960 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.401 0.599 32 H 0.395 0.605 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.162 2.393 -9.434 12.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.110 4.110 3 Si 0.713 3.287 4 H -0.203 1.203 5 H -0.234 1.234 6 H -0.194 1.194 7 C -0.487 4.487 8 H 0.090 0.910 9 C 0.002 3.998 10 C -0.049 4.049 11 N -0.188 5.188 12 C -0.074 4.074 13 C -0.165 4.165 14 C -0.165 4.165 15 C -0.065 4.065 16 H 0.114 0.886 17 C 0.292 3.708 18 N -0.420 5.420 19 O -0.419 6.419 20 C -0.238 4.238 21 C -0.224 4.224 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.110 0.890 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.229 0.771 32 H 0.226 0.774 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.990 2.064 -8.984 12.199 hybrid contribution 1.229 1.498 -0.145 1.943 sum 9.218 3.561 -9.129 13.453 Atomic orbital electron populations 1.69901 1.06280 1.26451 1.52012 1.24690 0.94144 0.98455 0.93760 0.86902 0.79880 0.83807 0.78103 1.20291 1.23366 1.19351 1.20030 0.85812 0.94045 1.48826 0.91031 1.19550 0.95552 0.95960 0.88694 1.22374 0.93521 0.99185 0.89853 1.64011 1.51060 1.02343 1.01373 1.23028 1.00986 0.91028 0.92347 1.22726 1.00730 0.96064 0.97020 1.22717 1.00808 0.96469 0.96471 1.22806 0.93596 0.96017 0.94062 0.88577 1.21420 0.88819 0.82805 0.77772 1.44036 1.24266 1.08436 1.65295 1.90720 1.37651 1.70253 1.43292 1.23028 1.01436 1.00441 0.98846 1.22814 1.00724 0.92058 1.06789 0.93123 0.92723 0.93332 0.94149 0.89018 0.90383 0.91108 0.90732 0.91140 0.77071 0.77443 0.89671 0.91773 0.91400 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.09 2.61 5.47 -17.82 -0.10 2.51 16 3 Si 0.88 22.49 24.39 -169.99 -4.15 18.35 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.31 -7.93 7.11 56.52 0.40 -7.52 16 6 H -0.27 -6.86 6.24 56.52 0.35 -6.51 16 7 C -0.45 -12.64 8.59 -34.44 -0.30 -12.93 16 8 H 0.07 2.20 8.06 -52.49 -0.42 1.77 16 9 C 0.00 0.09 0.90 -155.62 -0.14 -0.05 16 10 C 0.08 1.79 2.37 -3.82 -0.01 1.78 16 11 N -0.46 -9.75 4.01 -224.72 -0.90 -10.65 16 12 C 0.05 0.99 6.33 -2.30 -0.01 0.98 16 13 C -0.13 -1.82 7.08 -24.60 -0.17 -1.99 16 14 C -0.13 -1.76 6.46 -24.91 -0.16 -1.92 16 15 C 0.05 0.82 3.84 -67.88 -0.26 0.56 16 16 H 0.10 1.60 7.98 -51.93 -0.41 1.19 16 17 C 0.51 8.89 5.23 -10.99 -0.06 8.83 16 18 N -0.86 -11.40 8.87 31.22 0.28 -11.13 16 19 O -0.54 -11.20 14.46 5.56 0.08 -11.12 16 20 C -0.20 -4.59 9.05 -26.73 -0.24 -4.83 16 21 C -0.19 -4.07 9.89 -26.69 -0.26 -4.33 16 22 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.05 1.32 3.55 -51.93 -0.18 1.13 16 24 H 0.05 1.13 5.77 -51.93 -0.30 0.83 16 25 H 0.04 0.75 7.53 -51.92 -0.39 0.35 16 26 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.01 7.80 -51.93 -0.41 0.61 16 31 H 0.40 4.29 8.71 -40.82 -0.36 3.94 16 32 H 0.40 4.57 8.93 -40.82 -0.36 4.20 16 33 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 34 H 0.06 1.41 8.14 -51.92 -0.42 0.98 16 35 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 36 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 283.01 15.07 4.26 4.26 Total: -1.00 -33.16 283.01 -6.76 -39.93 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.40 Total: 8.82 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -1.71 Total: -11.41 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.15 Total: -48.83 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.15 Total: 18.35 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.16 -6.76 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259266.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.482 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds