Wall clock time and date at job start Sun Mar 29 2020 21:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00107 * 2 1 4 4 H 1.48499 * 109.46710 * 265.83389 * 3 2 1 5 5 H 1.48490 * 109.47252 * 25.83442 * 3 2 1 6 6 H 1.48504 * 109.46839 * 145.83771 * 3 2 1 7 7 C 1.37876 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00092 * 2.23463 * 7 2 1 9 9 C 1.50701 * 120.00194 * 182.24164 * 7 2 1 10 10 C 1.52998 * 115.55892 * 298.64814 * 9 7 2 11 11 N 1.46904 * 109.47110 * 327.03201 * 10 9 7 12 12 C 1.47841 * 110.99964 * 285.13287 * 11 10 9 13 13 C 1.54906 * 104.79711 * 213.63613 * 12 11 10 14 14 C 1.55136 * 101.65242 * 37.07353 * 13 12 11 15 15 C 1.47444 * 110.99859 * 164.29408 * 11 10 9 16 16 H 1.09005 * 109.88404 * 242.82891 * 15 11 10 17 17 C 1.50698 * 109.88799 * 3.84893 * 15 11 10 18 18 N 1.34778 * 120.00060 * 227.81821 * 17 15 11 19 19 O 1.21278 * 120.00458 * 47.82268 * 17 15 11 20 20 C 1.52998 * 117.49722 * 84.33445 * 9 7 2 21 21 C 1.53004 * 60.03184 * 107.50403 * 20 9 7 22 22 H 0.97005 * 119.99343 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47116 * 87.03207 * 10 9 7 24 24 H 1.09006 * 109.46966 * 207.02995 * 10 9 7 25 25 H 1.09007 * 110.37495 * 332.46692 * 12 11 10 26 26 H 1.09004 * 110.37281 * 94.80577 * 12 11 10 27 27 H 1.08998 * 110.99024 * 278.97636 * 13 12 11 28 28 H 1.09005 * 111.02417 * 155.17856 * 13 12 11 29 29 H 1.08999 * 110.70818 * 205.96295 * 14 13 12 30 30 H 1.08997 * 110.70810 * 82.72843 * 14 13 12 31 31 H 0.97005 * 119.99864 * 0.02562 * 18 17 15 32 32 H 0.96997 * 120.00218 * 180.02562 * 18 17 15 33 33 H 1.08993 * 117.50445 * 0.02562 * 20 9 7 34 34 H 1.09007 * 117.49406 * 215.00249 * 20 9 7 35 35 H 1.08999 * 117.49846 * 107.47534 * 21 20 9 36 36 H 1.08996 * 117.49478 * 252.47251 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5847 1.9955 -1.3964 5 1 1.4055 2.6765 0.6101 6 1 3.5000 1.4671 0.7862 7 6 2.0045 -1.1941 0.0005 8 1 1.4651 -2.1290 -0.0355 9 6 3.5106 -1.1946 0.0516 10 6 4.2112 -0.5101 -1.1238 11 7 3.4150 -0.6963 -2.3442 12 6 3.5467 -2.0766 -2.8573 13 6 3.4655 -1.9355 -4.3977 14 6 4.2302 -0.6060 -4.6313 15 6 3.8407 0.2398 -3.4008 16 1 3.0202 0.9113 -3.6539 17 6 5.0293 1.0378 -2.9302 18 7 5.0465 2.3765 -3.0856 19 8 5.9705 0.4755 -2.4117 20 6 4.1708 -1.0868 1.4276 21 6 4.1968 -2.4155 0.6695 22 1 -0.4849 0.8401 -0.0004 23 1 4.3134 0.5549 -0.9156 24 1 5.1990 -0.9494 -1.2638 25 1 4.5077 -2.5000 -2.5651 26 1 2.7298 -2.6977 -2.4895 27 1 2.4301 -1.8538 -4.7283 28 1 3.9670 -2.7667 -4.8935 29 1 3.8958 -0.1255 -5.5508 30 1 5.3060 -0.7793 -4.6551 31 1 4.2936 2.8264 -3.5000 32 1 5.8117 2.8901 -2.7830 33 1 3.5160 -1.0158 2.2959 34 1 5.1042 -0.5278 1.4955 35 1 5.1471 -2.7305 0.2384 36 1 3.5592 -3.2184 1.0394 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259266.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:42 Heat of formation + Delta-G solvation = -17.724758 kcal Electronic energy + Delta-G solvation = -18443.382940 eV Core-core repulsion = 15734.704557 eV Total energy + Delta-G solvation = -2708.678383 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.71935 -38.96637 -37.80684 -34.77830 -34.09047 -32.62138 -30.26336 -27.95782 -26.39814 -23.78609 -23.22766 -22.14557 -20.98675 -20.72595 -18.69224 -18.21681 -17.68893 -16.90356 -16.55961 -16.04091 -15.84221 -15.36275 -15.03416 -14.71243 -14.53929 -13.99052 -13.36342 -13.29281 -13.12430 -12.86509 -12.43243 -12.37525 -12.04426 -11.99589 -11.83059 -11.66116 -11.37892 -11.06828 -10.85382 -10.70686 -10.46715 -10.18822 -8.95756 -8.12145 -6.10664 1.34677 1.41787 1.46690 1.51666 2.49106 2.54989 3.01025 3.22244 3.39699 3.63249 3.81805 3.94848 4.21504 4.23001 4.31044 4.40523 4.51397 4.63489 4.73807 4.80828 4.85923 4.89041 4.93406 5.04339 5.05517 5.24863 5.28250 5.36359 5.46658 5.79929 5.84551 6.19257 6.23021 6.36473 6.46447 6.88308 7.24425 7.55436 9.04283 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.012528 C = 0.011482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.314579 B = 2234.481120 C = 2437.968637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.042 3.958 3 Si 0.937 3.063 4 H -0.248 1.248 5 H -0.312 1.312 6 H -0.268 1.268 7 C -0.441 4.441 8 H 0.028 0.972 9 C -0.023 4.023 10 C 0.098 3.902 11 N -0.494 5.494 12 C 0.050 3.950 13 C -0.117 4.117 14 C -0.114 4.114 15 C 0.037 3.963 16 H 0.105 0.895 17 C 0.503 3.497 18 N -0.838 5.838 19 O -0.579 6.579 20 C -0.197 4.197 21 C -0.168 4.168 22 H 0.260 0.740 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.037 0.963 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.416 0.584 32 H 0.407 0.593 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.818 3.493 -11.103 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.154 4.154 3 Si 0.765 3.235 4 H -0.172 1.172 5 H -0.241 1.241 6 H -0.193 1.193 7 C -0.479 4.479 8 H 0.047 0.953 9 C -0.024 4.024 10 C -0.030 4.030 11 N -0.218 5.218 12 C -0.077 4.077 13 C -0.154 4.154 14 C -0.153 4.153 15 C -0.075 4.075 16 H 0.123 0.877 17 C 0.288 3.712 18 N -0.402 5.402 19 O -0.459 6.459 20 C -0.236 4.236 21 C -0.205 4.205 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.087 0.913 31 H 0.247 0.753 32 H 0.238 0.762 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.651 3.192 -10.683 14.747 hybrid contribution 0.674 1.079 0.392 1.331 sum 10.325 4.270 -10.291 15.190 Atomic orbital electron populations 1.70039 1.08002 1.27249 1.54221 1.25349 0.94655 1.01722 0.93720 0.86027 0.78253 0.79619 0.79590 1.17214 1.24055 1.19315 1.20043 0.87876 0.92269 1.47675 0.95337 1.19587 0.93657 0.98741 0.90392 1.22064 0.93133 0.97872 0.89968 1.63851 1.51663 1.04139 1.02166 1.22988 0.99610 0.89677 0.95448 1.22698 1.01527 0.97486 0.93732 1.22704 1.00639 0.95577 0.96350 1.22969 0.94062 0.96114 0.94352 0.87731 1.21426 0.88345 0.83936 0.77525 1.43857 1.25147 1.07229 1.64000 1.90701 1.38815 1.71223 1.45125 1.23016 1.01620 1.01381 0.97534 1.22829 1.01172 0.91285 1.05211 0.93155 0.93846 0.93748 0.94504 0.91721 0.90030 0.88425 0.87218 0.91306 0.75331 0.76152 0.90566 0.90185 0.89106 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 2 C 0.04 2.45 5.47 84.65 0.46 2.92 16 3 Si 0.94 46.11 24.39 68.60 1.67 47.79 16 4 H -0.25 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 6 H -0.27 -13.10 6.24 99.48 0.62 -12.48 16 7 C -0.44 -25.34 8.59 25.60 0.22 -25.12 16 8 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 9 C -0.02 -1.09 0.90 -52.90 -0.05 -1.14 16 10 C 0.10 4.35 2.37 86.30 0.20 4.55 16 11 N -0.49 -20.17 4.01 -864.87 -3.46 -23.63 16 12 C 0.05 1.82 6.33 86.77 0.55 2.37 16 13 C -0.12 -3.03 7.08 31.98 0.23 -2.80 16 14 C -0.11 -2.80 6.46 31.77 0.21 -2.59 16 15 C 0.04 1.17 3.84 44.51 0.17 1.34 16 16 H 0.10 3.14 7.98 -2.38 -0.02 3.12 16 17 C 0.50 16.25 5.23 87.66 0.46 16.71 16 18 N -0.84 -19.42 8.87 -173.54 -1.54 -20.96 16 19 O -0.58 -22.71 14.46 -3.02 -0.04 -22.76 16 20 C -0.20 -8.89 9.05 30.59 0.28 -8.61 16 21 C -0.17 -7.18 9.89 30.62 0.30 -6.88 16 22 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 23 H 0.04 2.01 3.55 -2.39 -0.01 2.00 16 24 H 0.04 2.02 5.77 -2.38 -0.01 2.00 16 25 H 0.04 1.33 7.53 -2.38 -0.02 1.32 16 26 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 1.74 7.80 -2.39 -0.02 1.72 16 31 H 0.42 7.25 8.71 -92.70 -0.81 6.45 16 32 H 0.41 8.03 8.93 -92.71 -0.83 7.20 16 33 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 34 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16 35 H 0.09 3.47 8.04 -2.39 -0.02 3.45 16 36 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -72.64 283.01 -0.67 -73.32 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -0.63 Total: 25.08 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 3.03 Total: -19.25 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -4.71 Total: -104.17 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.04 Total: -22.76 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.67 Total: 47.79 kcal Total: -72.64 -0.67 -73.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259266.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.592 kcal (2) G-P(sol) polarization free energy of solvation -72.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds