Wall clock time and date at job start Sun Mar 29 2020 21:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48496 * 109.47140 * 240.00313 * 3 2 1 5 5 H 1.48500 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46778 * 120.00174 * 3 2 1 7 7 C 1.37873 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00187 * 171.39176 * 7 2 1 9 9 C 1.50706 * 120.00116 * 351.38614 * 7 2 1 10 10 C 1.52999 * 115.54664 * 324.20206 * 9 7 2 11 11 N 1.46897 * 109.47620 * 305.52522 * 10 9 7 12 12 C 1.49001 * 110.96891 * 303.03321 * 11 10 9 13 13 C 1.54941 * 103.00508 * 200.29431 * 12 11 10 14 14 C 1.54604 * 103.07777 * 37.39795 * 13 12 11 15 15 C 1.47893 * 111.00354 * 185.58766 * 11 10 9 16 16 H 1.09000 * 109.91647 * 26.49269 * 15 11 10 17 17 C 1.50697 * 110.08468 * 265.29464 * 15 11 10 18 18 N 1.34780 * 120.00229 * 180.85669 * 17 15 11 19 19 O 1.21290 * 120.00089 * 0.85166 * 17 15 11 20 20 C 1.52997 * 117.49996 * 109.87290 * 9 7 2 21 21 C 1.52994 * 117.49863 * 178.53471 * 9 7 2 22 22 H 0.96996 * 119.99924 * 5.11411 * 1 2 3 23 23 H 1.09002 * 109.46884 * 185.52270 * 10 9 7 24 24 H 1.09006 * 109.47100 * 65.53040 * 10 9 7 25 25 H 1.09004 * 110.86437 * 81.89795 * 12 11 10 26 26 H 1.09003 * 110.68703 * 318.61393 * 12 11 10 27 27 H 1.08997 * 110.72577 * 278.95769 * 13 12 11 28 28 H 1.08997 * 110.72336 * 155.84077 * 13 12 11 29 29 H 1.08992 * 110.30983 * 96.87028 * 14 13 12 30 30 H 1.09001 * 110.30541 * 219.03940 * 14 13 12 31 31 H 0.96997 * 120.00014 * 359.97438 * 18 17 15 32 32 H 0.97005 * 119.99763 * 179.97438 * 18 17 15 33 33 H 1.08997 * 117.50095 * 215.00200 * 20 9 7 34 34 H 1.09000 * 117.49706 * 0.02598 * 20 9 7 35 35 H 1.09004 * 117.50082 * 359.97221 * 21 9 7 36 36 H 1.08995 * 117.49896 * 144.97319 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0754 -1.1993 -0.1405 9 6 1.2638 -2.4919 0.1944 10 6 0.0800 -2.4371 1.1622 11 7 0.5282 -1.9011 2.4543 12 6 1.6418 -2.7182 3.0132 13 6 1.6122 -2.3630 4.5211 14 6 0.1009 -2.2354 4.8209 15 6 -0.5576 -1.9573 3.4569 16 1 -1.2509 -2.7608 3.2086 17 6 -1.2911 -0.6416 3.4996 18 7 -2.3127 -0.4673 4.3613 19 8 -0.9621 0.2605 2.7587 20 6 1.1482 -3.4273 -1.0109 21 6 2.0803 -3.7850 0.1495 22 1 -0.4850 0.8367 -0.0749 23 1 -0.3198 -3.4411 1.3043 24 1 -0.6962 -1.7918 0.7506 25 1 2.5949 -2.4311 2.5691 26 1 1.4515 -3.7812 2.8646 27 1 2.1229 -1.4177 4.7048 28 1 2.0570 -3.1619 5.1143 29 1 -0.2809 -3.1650 5.2427 30 1 -0.0805 -1.4061 5.5046 31 1 -2.5761 -1.1888 4.9537 32 1 -2.7847 0.3798 4.3890 33 1 0.2289 -4.0037 -1.1143 34 1 1.6084 -3.1041 -1.9446 35 1 3.1533 -3.6970 -0.0214 36 1 1.7744 -4.5965 0.8097 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259267.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:45 Heat of formation + Delta-G solvation = 5.407815 kcal Electronic energy + Delta-G solvation = -18286.194425 eV Core-core repulsion = 15578.519146 eV Total energy + Delta-G solvation = -2707.675279 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.37740 -37.36243 -35.76961 -33.02000 -31.77786 -30.77094 -28.64073 -25.41315 -24.58361 -22.03464 -21.23461 -20.40024 -19.19192 -18.73341 -16.96918 -16.21150 -15.84048 -14.95166 -14.43753 -14.35727 -13.63491 -13.44653 -13.06857 -12.96397 -12.52401 -12.27836 -11.51536 -11.25545 -11.04779 -10.83242 -10.67164 -10.55097 -10.45507 -10.27275 -10.21423 -9.81175 -9.14195 -9.05747 -8.99540 -8.74106 -8.46050 -7.76580 -7.19926 -5.62983 -3.66021 3.45485 3.53884 3.61803 3.62581 3.97514 4.70630 4.87151 5.09830 5.16976 5.28244 5.45979 5.66866 5.76569 5.84413 5.95113 6.09382 6.18164 6.18681 6.28148 6.45665 6.61992 6.66753 6.78518 6.82782 6.84809 7.05549 7.21383 7.32487 7.44336 7.73726 7.84218 8.09408 8.25297 8.33016 8.74979 9.06647 9.24541 9.94332 11.39128 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.012513 C = 0.009584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.498403 B = 2237.219529 C = 2920.985256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.099 3.901 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.499 4.499 8 H 0.050 0.950 9 C 0.074 3.926 10 C 0.096 3.904 11 N -0.448 5.448 12 C 0.046 3.954 13 C -0.125 4.125 14 C -0.120 4.120 15 C 0.047 3.953 16 H 0.060 0.940 17 C 0.509 3.491 18 N -0.875 5.875 19 O -0.474 6.474 20 C -0.210 4.210 21 C -0.220 4.220 22 H 0.259 0.741 23 H -0.018 1.018 24 H 0.120 0.880 25 H 0.091 0.909 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.390 0.610 32 H 0.393 0.607 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.606 -5.308 10.546 12.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.108 4.108 3 Si 0.721 3.279 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.073 3.927 10 C -0.031 4.031 11 N -0.171 5.171 12 C -0.082 4.082 13 C -0.164 4.164 14 C -0.158 4.158 15 C -0.066 4.066 16 H 0.078 0.922 17 C 0.291 3.709 18 N -0.442 5.442 19 O -0.342 6.342 20 C -0.249 4.249 21 C -0.257 4.257 22 H 0.070 0.930 23 H 0.000 1.000 24 H 0.138 0.862 25 H 0.109 0.891 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.217 0.783 32 H 0.223 0.777 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.238 -4.125 9.893 11.197 hybrid contribution -0.232 -0.175 0.414 0.505 sum -3.470 -4.300 10.307 11.695 Atomic orbital electron populations 1.69590 1.05741 1.26476 1.46016 1.24645 0.94486 0.98081 0.93556 0.86710 0.79409 0.84104 0.77691 1.21369 1.21720 1.20510 1.20060 0.92596 0.88766 1.52107 0.93210 1.18847 0.93117 0.88634 0.92055 1.22015 0.99587 0.93595 0.87949 1.64436 1.02943 1.49434 1.00296 1.23261 0.97996 0.94578 0.92381 1.22516 0.95013 1.01587 0.97242 1.22358 0.96750 1.01153 0.95533 1.22254 0.95607 0.94191 0.94550 0.92233 1.20623 0.79839 0.90554 0.79846 1.43989 1.37867 1.18977 1.43342 1.90879 1.63395 1.42247 1.37686 1.22992 0.99214 1.08028 0.94683 1.22957 0.96830 1.02458 1.03458 0.93017 1.00043 0.86205 0.89069 0.95176 0.90977 0.91842 0.91527 0.91365 0.78326 0.77742 0.92276 0.90529 0.90950 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.60 10.03 55.43 0.56 -24.04 16 2 C 0.10 2.84 5.21 -17.82 -0.09 2.75 16 3 Si 0.89 23.17 29.55 -169.99 -5.02 18.15 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.28 -7.32 7.11 56.52 0.40 -6.91 16 7 C -0.50 -14.03 8.73 -34.44 -0.30 -14.33 16 8 H 0.05 1.42 7.83 -52.49 -0.41 1.01 16 9 C 0.07 1.87 1.26 -155.66 -0.20 1.68 16 10 C 0.10 2.31 3.97 -3.83 -0.02 2.29 16 11 N -0.45 -9.89 4.13 -223.54 -0.92 -10.81 16 12 C 0.05 0.88 5.06 -1.63 -0.01 0.87 16 13 C -0.13 -1.93 7.05 -24.86 -0.18 -2.11 16 14 C -0.12 -1.68 6.47 -25.37 -0.16 -1.84 16 15 C 0.05 0.84 2.87 -67.80 -0.19 0.65 16 16 H 0.06 1.01 7.64 -51.93 -0.40 0.61 16 17 C 0.51 9.64 7.26 -10.99 -0.08 9.56 16 18 N -0.87 -11.38 8.74 31.22 0.27 -11.11 16 19 O -0.47 -11.70 16.65 5.55 0.09 -11.61 16 20 C -0.21 -4.96 9.96 -26.69 -0.27 -5.23 16 21 C -0.22 -4.88 8.77 -26.70 -0.23 -5.11 16 22 H 0.26 7.60 8.32 -40.82 -0.34 7.26 16 23 H -0.02 -0.41 7.89 -51.93 -0.41 -0.82 16 24 H 0.12 3.29 5.97 -51.93 -0.31 2.99 16 25 H 0.09 1.94 7.82 -51.93 -0.41 1.54 16 26 H 0.03 0.55 7.36 -51.93 -0.38 0.17 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.89 7.63 -51.93 -0.40 0.50 16 31 H 0.39 3.67 8.79 -40.82 -0.36 3.31 16 32 H 0.39 4.71 8.93 -40.82 -0.36 4.34 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.06 1.23 7.60 -51.93 -0.39 0.84 16 LS Contribution 291.67 15.07 4.40 4.40 Total: -1.00 -32.42 291.67 -7.86 -40.28 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.50 Total: 5.58 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.73 Total: -10.83 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.10 Total: -45.96 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.42 -7.86 -40.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259267.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.684 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds