Wall clock time and date at job start Sun Mar 29 2020 21:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48496 * 109.47140 * 240.00313 * 3 2 1 5 5 H 1.48500 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46778 * 120.00174 * 3 2 1 7 7 C 1.37873 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00187 * 171.39176 * 7 2 1 9 9 C 1.50706 * 120.00116 * 351.38614 * 7 2 1 10 10 C 1.52999 * 115.54664 * 324.20206 * 9 7 2 11 11 N 1.46897 * 109.47620 * 305.52522 * 10 9 7 12 12 C 1.49001 * 110.96891 * 303.03321 * 11 10 9 13 13 C 1.54941 * 103.00508 * 200.29431 * 12 11 10 14 14 C 1.54604 * 103.07777 * 37.39795 * 13 12 11 15 15 C 1.47893 * 111.00354 * 185.58766 * 11 10 9 16 16 H 1.09000 * 109.91647 * 26.49269 * 15 11 10 17 17 C 1.50697 * 110.08468 * 265.29464 * 15 11 10 18 18 N 1.34780 * 120.00229 * 180.85669 * 17 15 11 19 19 O 1.21290 * 120.00089 * 0.85166 * 17 15 11 20 20 C 1.52997 * 117.49996 * 109.87290 * 9 7 2 21 21 C 1.52994 * 117.49863 * 178.53471 * 9 7 2 22 22 H 0.96996 * 119.99924 * 5.11411 * 1 2 3 23 23 H 1.09002 * 109.46884 * 185.52270 * 10 9 7 24 24 H 1.09006 * 109.47100 * 65.53040 * 10 9 7 25 25 H 1.09004 * 110.86437 * 81.89795 * 12 11 10 26 26 H 1.09003 * 110.68703 * 318.61393 * 12 11 10 27 27 H 1.08997 * 110.72577 * 278.95769 * 13 12 11 28 28 H 1.08997 * 110.72336 * 155.84077 * 13 12 11 29 29 H 1.08992 * 110.30983 * 96.87028 * 14 13 12 30 30 H 1.09001 * 110.30541 * 219.03940 * 14 13 12 31 31 H 0.96997 * 120.00014 * 359.97438 * 18 17 15 32 32 H 0.97005 * 119.99763 * 179.97438 * 18 17 15 33 33 H 1.08997 * 117.50095 * 215.00200 * 20 9 7 34 34 H 1.09000 * 117.49706 * 0.02598 * 20 9 7 35 35 H 1.09004 * 117.50082 * 359.97221 * 21 9 7 36 36 H 1.08995 * 117.49896 * 144.97319 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0754 -1.1993 -0.1405 9 6 1.2638 -2.4919 0.1944 10 6 0.0800 -2.4371 1.1622 11 7 0.5282 -1.9011 2.4543 12 6 1.6418 -2.7182 3.0132 13 6 1.6122 -2.3630 4.5211 14 6 0.1009 -2.2354 4.8209 15 6 -0.5576 -1.9573 3.4569 16 1 -1.2509 -2.7608 3.2086 17 6 -1.2911 -0.6416 3.4996 18 7 -2.3127 -0.4673 4.3613 19 8 -0.9621 0.2605 2.7587 20 6 1.1482 -3.4273 -1.0109 21 6 2.0803 -3.7850 0.1495 22 1 -0.4850 0.8367 -0.0749 23 1 -0.3198 -3.4411 1.3043 24 1 -0.6962 -1.7918 0.7506 25 1 2.5949 -2.4311 2.5691 26 1 1.4515 -3.7812 2.8646 27 1 2.1229 -1.4177 4.7048 28 1 2.0570 -3.1619 5.1143 29 1 -0.2809 -3.1650 5.2427 30 1 -0.0805 -1.4061 5.5046 31 1 -2.5761 -1.1888 4.9537 32 1 -2.7847 0.3798 4.3890 33 1 0.2289 -4.0037 -1.1143 34 1 1.6084 -3.1041 -1.9446 35 1 3.1533 -3.6970 -0.0214 36 1 1.7744 -4.5965 0.8097 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259267.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:44 Heat of formation + Delta-G solvation = -19.117319 kcal Electronic energy + Delta-G solvation = -18287.257915 eV Core-core repulsion = 15578.519146 eV Total energy + Delta-G solvation = -2708.738769 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83591 -39.00184 -37.44175 -34.38546 -33.90686 -32.25620 -29.99168 -27.43747 -26.34485 -23.46667 -22.98828 -21.84825 -20.68501 -20.55290 -18.23956 -18.05315 -17.29085 -16.51781 -16.46489 -15.82988 -15.43405 -14.99258 -14.82294 -14.49208 -14.01311 -13.86159 -13.22777 -12.99375 -12.81657 -12.71030 -12.38598 -12.24954 -12.14187 -11.84442 -11.79977 -11.56302 -11.04466 -10.84130 -10.50812 -10.39177 -10.33803 -9.80733 -8.76521 -7.78335 -5.85394 1.41445 1.48361 1.51504 2.03443 2.56417 2.70761 3.25005 3.52863 3.77552 3.87619 3.97877 4.13932 4.40034 4.44494 4.45304 4.55369 4.76182 4.81557 4.88199 4.93981 4.98483 5.02253 5.12422 5.19940 5.30469 5.38947 5.46416 5.59224 5.75453 6.15826 6.15957 6.39244 6.51085 6.72770 6.83661 7.09133 7.74299 7.76617 9.17980 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.012513 C = 0.009584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.498403 B = 2237.219529 C = 2920.985256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.063 3.937 3 Si 0.932 3.068 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.035 0.965 9 C 0.043 3.957 10 C 0.111 3.889 11 N -0.483 5.483 12 C 0.045 3.955 13 C -0.119 4.119 14 C -0.107 4.107 15 C 0.041 3.959 16 H 0.074 0.926 17 C 0.504 3.496 18 N -0.846 5.846 19 O -0.544 6.544 20 C -0.213 4.213 21 C -0.190 4.190 22 H 0.248 0.752 23 H -0.006 1.006 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.412 0.588 32 H 0.401 0.599 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 -7.047 12.672 15.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.142 4.142 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.042 3.958 10 C -0.017 4.017 11 N -0.206 5.206 12 C -0.082 4.082 13 C -0.157 4.157 14 C -0.145 4.145 15 C -0.072 4.072 16 H 0.092 0.908 17 C 0.288 3.712 18 N -0.413 5.413 19 O -0.418 6.418 20 C -0.251 4.251 21 C -0.227 4.227 22 H 0.058 0.942 23 H 0.012 0.988 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.097 0.903 31 H 0.243 0.757 32 H 0.231 0.769 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.593 -5.898 12.066 13.903 hybrid contribution -0.146 0.328 -0.221 0.421 sum -3.738 -5.570 11.845 13.613 Atomic orbital electron populations 1.69760 1.06249 1.25782 1.46950 1.25121 0.95071 1.00059 0.93988 0.86061 0.78429 0.81759 0.77648 1.20333 1.22396 1.21008 1.20229 0.92052 0.90471 1.51819 0.94664 1.18924 0.94612 0.88585 0.93630 1.21610 0.97857 0.93212 0.88973 1.64209 1.05115 1.50654 1.00638 1.23193 0.95658 0.94739 0.94645 1.22489 0.96330 1.01995 0.94881 1.22382 0.95151 1.03637 0.93318 1.22391 0.95146 0.93909 0.95713 0.90840 1.20993 0.80412 0.90291 0.79528 1.43649 1.35790 1.20044 1.41827 1.90858 1.65780 1.44364 1.40779 1.22980 1.00279 1.07694 0.94195 1.22898 0.96403 1.01105 1.02296 0.94217 0.98793 0.90121 0.92254 0.93943 0.92683 0.88194 0.87427 0.90277 0.75710 0.76857 0.90821 0.91598 0.91017 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -51.30 10.03 21.45 0.22 -51.08 16 2 C 0.06 3.67 5.21 84.65 0.44 4.11 16 3 Si 0.93 48.73 29.55 68.60 2.03 50.75 16 4 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 5 H -0.30 -15.74 7.11 99.48 0.71 -15.04 16 6 H -0.28 -14.91 7.11 99.48 0.71 -14.20 16 7 C -0.51 -29.20 8.73 25.60 0.22 -28.97 16 8 H 0.04 2.06 7.83 -2.91 -0.02 2.04 16 9 C 0.04 2.18 1.26 -52.93 -0.07 2.11 16 10 C 0.11 5.35 3.97 86.30 0.34 5.70 16 11 N -0.48 -21.02 4.13 -861.15 -3.56 -24.58 16 12 C 0.05 1.66 5.06 86.56 0.44 2.10 16 13 C -0.12 -3.30 7.05 31.80 0.22 -3.08 16 14 C -0.11 -2.56 6.47 31.47 0.20 -2.36 16 15 C 0.04 1.39 2.87 44.31 0.13 1.52 16 16 H 0.07 2.27 7.64 -2.39 -0.02 2.25 16 17 C 0.50 18.62 7.26 87.66 0.64 19.25 16 18 N -0.85 -20.08 8.74 -173.52 -1.52 -21.59 16 19 O -0.54 -27.42 16.65 -3.06 -0.05 -27.47 16 20 C -0.21 -9.88 9.96 30.62 0.30 -9.57 16 21 C -0.19 -8.14 8.77 30.62 0.27 -7.87 16 22 H 0.25 15.12 8.32 -92.71 -0.77 14.35 16 23 H -0.01 -0.25 7.89 -2.39 -0.02 -0.27 16 24 H 0.08 4.54 5.97 -2.38 -0.01 4.52 16 25 H 0.06 2.52 7.82 -2.39 -0.02 2.50 16 26 H 0.04 1.43 7.36 -2.39 -0.02 1.41 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 1.75 7.63 -2.39 -0.02 1.73 16 31 H 0.41 6.24 8.79 -92.71 -0.82 5.42 16 32 H 0.40 8.86 8.93 -92.70 -0.83 8.03 16 33 H 0.07 3.16 8.14 -2.39 -0.02 3.15 16 34 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 36 H 0.09 3.23 7.60 -2.39 -0.02 3.21 16 Total: -1.00 -73.18 291.67 -0.30 -73.47 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -0.56 Total: 17.56 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 3.14 Total: -17.07 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -4.86 Total: -97.25 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.05 Total: -27.47 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.03 Total: 50.75 kcal Total: -73.18 -0.30 -73.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259267.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.357 kcal (2) G-P(sol) polarization free energy of solvation -73.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds