Wall clock time and date at job start Sun Mar 29 2020 22:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 O 1.34751 * 126.44392 * 299.69003 * 4 2 1 6 6 C 1.33963 * 107.75777 * 179.83511 * 5 4 2 7 7 N 1.30265 * 108.75915 * 0.43317 * 6 5 4 8 8 C 1.34335 * 126.44210 * 119.99804 * 4 2 1 9 9 C 1.50694 * 126.16790 * 0.02562 * 8 4 2 10 10 N 1.46903 * 109.47084 * 89.99802 * 9 8 4 11 11 C 1.46900 * 111.00299 * 293.95557 * 10 9 8 12 12 C 1.46896 * 111.00061 * 170.00157 * 10 9 8 13 13 C 1.50702 * 109.47384 * 190.00497 * 12 10 9 14 14 H 1.08001 * 119.99835 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00312 * 179.97438 * 13 12 10 16 16 N 1.31511 * 120.00055 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00107 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47092 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46850 * 120.00158 * 17 15 13 20 20 H 1.48498 * 109.47205 * 240.00253 * 17 15 13 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.08003 * 125.62660 * 180.14091 * 6 5 4 29 29 H 1.09001 * 109.47538 * 210.00214 * 9 8 4 30 30 H 1.09003 * 109.46989 * 330.00143 * 9 8 4 31 31 H 1.09002 * 109.46969 * 59.99404 * 11 10 9 32 32 H 1.08999 * 109.47296 * 179.97438 * 11 10 9 33 33 H 1.09005 * 109.47143 * 300.00154 * 11 10 9 34 34 H 1.09006 * 109.47235 * 309.99729 * 12 10 9 35 35 H 1.08993 * 109.47460 * 70.00112 * 12 10 9 36 36 H 0.96996 * 120.00654 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7931 -0.3618 2.5098 6 6 2.4135 -1.2495 3.2981 7 7 3.0282 -2.1187 2.5474 8 6 2.8078 -1.8070 1.2579 9 6 3.3359 -2.5531 0.0599 10 7 4.6384 -1.9958 -0.3289 11 6 4.4977 -0.6153 -0.8110 12 6 5.2931 -2.8410 -1.3363 13 6 6.7155 -2.3821 -1.5295 14 1 7.0950 -1.5459 -0.9611 15 6 7.5323 -3.0297 -2.4319 16 7 7.0704 -4.0483 -3.1237 17 14 9.2952 -2.4604 -2.6719 18 1 9.5676 -1.3041 -1.7808 19 1 10.2235 -3.5706 -2.3392 20 1 9.4960 -2.0541 -4.0860 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 2.4092 -1.2429 4.3781 29 1 3.4521 -3.6075 0.3106 30 1 2.6354 -2.4518 -0.7690 31 1 4.0743 0.0042 -0.0204 32 1 5.4767 -0.2269 -1.0916 33 1 3.8376 -0.5988 -1.6783 34 1 5.2885 -3.8777 -0.9993 35 1 4.7549 -2.7637 -2.2809 36 1 7.6450 -4.5043 -3.7582 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092800082.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:40 Heat of formation + Delta-G solvation = -5.429643 kcal Electronic energy + Delta-G solvation = -17352.287723 eV Core-core repulsion = 14644.142497 eV Total energy + Delta-G solvation = -2708.145227 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.30581 -38.67842 -36.58716 -35.72396 -34.53494 -31.22934 -29.22420 -28.49673 -27.78398 -25.80757 -24.31523 -22.97229 -21.91329 -20.90612 -18.66234 -17.92924 -17.62405 -16.79184 -16.42519 -16.05326 -15.91288 -15.51121 -15.23419 -14.59549 -14.10912 -14.01683 -13.57040 -13.33307 -13.06922 -12.97154 -12.69492 -12.65839 -12.53404 -12.36975 -12.10433 -12.09943 -11.92822 -11.81443 -11.37228 -11.23991 -10.63386 -9.66021 -9.02804 -8.21382 -6.31643 0.54956 1.40135 1.41504 1.54891 1.72871 1.86877 2.40397 3.10954 3.27838 3.44705 3.62210 3.85975 3.97737 4.11638 4.28439 4.37506 4.48066 4.56450 4.64583 4.75502 4.82033 4.89083 4.91873 4.99995 5.03772 5.13101 5.15766 5.24105 5.32478 5.36903 5.42538 5.63063 6.01905 6.29680 6.55898 6.83333 6.85644 7.37846 8.89977 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033802 B = 0.005843 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.159307 B = 4791.236816 C = 5042.539979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.015 4.015 3 C -0.148 4.148 4 C -0.027 4.027 5 O -0.203 6.203 6 C 0.175 3.825 7 N -0.517 5.517 8 C -0.020 4.020 9 C 0.136 3.864 10 N -0.547 5.547 11 C 0.038 3.962 12 C 0.209 3.791 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.003 3.997 16 N -0.934 5.934 17 Si 0.971 3.029 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.274 1.274 21 H 0.065 0.935 22 H 0.052 0.948 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.296 0.704 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.023 0.977 34 H 0.001 0.999 35 H -0.028 1.028 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.696 10.815 8.250 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 C -0.205 4.205 4 C -0.081 4.081 5 O -0.089 6.089 6 C -0.051 4.051 7 N -0.245 5.245 8 C -0.139 4.139 9 C 0.008 3.992 10 N -0.271 5.271 11 C -0.110 4.110 12 C 0.083 3.917 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.195 4.195 16 N -0.574 5.574 17 Si 0.795 3.205 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.200 1.200 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.105 0.895 24 H 0.110 0.890 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.311 0.689 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.019 0.981 35 H -0.011 1.011 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.011 10.219 8.768 18.725 hybrid contribution 0.249 0.020 -1.062 1.091 sum -12.762 10.239 7.706 18.086 Atomic orbital electron populations 1.21833 0.91754 1.02468 1.03709 1.19967 0.97797 0.96500 0.89143 1.21964 1.01246 0.93517 1.03800 1.23419 1.02280 0.97580 0.84820 1.84386 1.59902 1.48555 1.16105 1.29026 0.91785 0.84117 1.00216 1.70287 1.22647 1.28899 1.02700 1.21262 1.01674 0.98204 0.92778 1.20183 0.90124 0.97350 0.91571 1.61940 1.19273 1.03413 1.42507 1.22445 1.00949 0.89675 0.97888 1.19397 0.93592 0.91630 0.87067 1.21448 0.96994 1.15898 1.21823 0.92208 1.25905 1.03406 0.94967 0.95268 1.70083 1.38178 1.22524 1.26621 0.85314 0.78702 0.78375 0.78094 1.18962 1.20425 1.19983 0.91632 0.92840 0.89545 0.88993 0.91507 0.92931 0.89409 0.68935 0.91658 0.93069 0.90795 0.92593 0.95864 0.98068 1.01063 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.18 71.98 0.66 -1.80 16 2 C -0.02 -0.35 2.38 -11.54 -0.03 -0.38 16 3 C -0.15 -2.91 9.01 71.98 0.65 -2.26 16 4 C -0.03 -0.76 4.99 24.79 0.12 -0.64 16 5 O -0.20 -5.15 10.77 -3.68 -0.04 -5.19 16 6 C 0.17 4.21 13.23 130.47 1.73 5.94 16 7 N -0.52 -17.86 11.29 -304.06 -3.43 -21.30 16 8 C -0.02 -0.72 6.00 41.26 0.25 -0.47 16 9 C 0.14 5.48 5.17 85.55 0.44 5.92 16 10 N -0.55 -25.47 4.74 -931.65 -4.42 -29.89 16 11 C 0.04 1.52 7.92 127.69 1.01 2.53 16 12 C 0.21 11.60 4.72 85.56 0.40 12.01 16 13 C -0.52 -30.65 8.46 25.60 0.22 -30.43 16 14 H 0.06 3.47 7.12 -2.91 -0.02 3.45 16 15 C 0.00 0.15 5.46 84.65 0.46 0.61 16 16 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 17 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.09 2.33 5.36 -2.39 -0.01 2.31 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 1.20 5.88 -2.39 -0.01 1.19 16 27 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 28 H 0.30 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.06 2.82 7.93 -2.39 -0.02 2.80 16 30 H 0.05 1.89 7.14 -2.39 -0.02 1.87 16 31 H 0.07 2.58 3.61 -2.39 -0.01 2.57 16 32 H 0.06 2.41 6.76 -2.39 -0.02 2.40 16 33 H 0.02 0.86 7.35 -2.38 -0.02 0.84 16 34 H 0.00 0.07 7.93 -2.38 -0.02 0.05 16 35 H -0.03 -1.65 8.12 -2.39 -0.02 -1.67 16 36 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -71.85 291.75 1.40 -70.45 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.07 Total: 4.47 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 5.92 Total: -8.97 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -7.57 Total: -107.89 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.04 Total: -5.19 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -71.85 1.40 -70.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092800082.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.023 kcal (2) G-P(sol) polarization free energy of solvation -71.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds