Wall clock time and date at job start Sun Mar 29 2020 21:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00210 * 2 1 4 4 H 1.48503 * 109.46840 * 239.99836 * 3 2 1 5 5 H 1.48496 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47054 * 119.99862 * 3 2 1 7 7 C 1.37881 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00083 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00167 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47501 * 184.67224 * 9 7 2 11 11 C 1.47904 * 110.99603 * 295.89146 * 10 9 7 12 12 C 1.53991 * 107.05722 * 145.84449 * 11 10 9 13 13 C 1.54596 * 105.14153 * 358.77007 * 12 11 10 14 14 C 1.49005 * 110.97101 * 53.32936 * 10 9 7 15 15 H 1.09004 * 110.68510 * 318.62176 * 14 10 9 16 16 C 1.50697 * 110.86521 * 81.89980 * 14 10 9 17 17 O 1.21286 * 119.99731 * 355.09979 * 16 14 10 18 18 N 1.34770 * 120.00530 * 175.10515 * 16 14 10 19 19 C 1.46498 * 120.00383 * 179.97438 * 18 16 14 20 20 C 1.52999 * 117.50164 * 223.62119 * 19 18 16 21 21 C 1.53008 * 117.49567 * 154.99610 * 19 18 16 22 22 H 0.97005 * 119.99882 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46927 * 64.66503 * 9 7 2 24 24 H 1.09001 * 109.46932 * 304.67348 * 9 7 2 25 25 H 1.09003 * 109.91832 * 26.48984 * 11 10 9 26 26 H 1.08997 * 110.08040 * 265.28661 * 11 10 9 27 27 H 1.09000 * 110.30707 * 239.85641 * 12 11 10 28 28 H 1.09003 * 110.39488 * 117.73582 * 12 11 10 29 29 H 1.09005 * 110.72274 * 96.40117 * 13 12 11 30 30 H 1.08999 * 110.72735 * 219.50505 * 13 12 11 31 31 H 0.97007 * 120.00047 * 359.97438 * 18 16 14 32 32 H 1.08994 * 115.55023 * 9.33340 * 19 18 16 33 33 H 1.08997 * 117.49937 * 0.02562 * 20 19 18 34 34 H 1.08995 * 117.50065 * 145.02588 * 20 19 18 35 35 H 1.09005 * 117.49757 * 214.97936 * 21 19 18 36 36 H 1.08994 * 117.50083 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2015 -3.6135 0.1117 11 6 3.0893 -3.6737 -1.0697 12 6 4.4634 -4.1647 -0.5776 13 6 4.3044 -4.3456 0.9495 14 6 3.0991 -3.4325 1.2871 15 1 3.4162 -2.3931 1.3730 16 6 2.4235 -3.8903 2.5540 17 8 1.2652 -4.2492 2.5278 18 7 3.1061 -3.9008 3.7159 19 6 2.4491 -4.3454 4.9476 20 6 2.6855 -3.5181 6.2127 21 6 3.3392 -4.8936 6.0648 22 1 -0.4850 0.8401 -0.0004 23 1 0.6881 -2.5938 -0.9292 24 1 0.5633 -2.5217 0.8449 25 1 3.1860 -2.6824 -1.5125 26 1 2.6874 -4.3709 -1.8048 27 1 5.2303 -3.4206 -0.7925 28 1 4.7175 -5.1152 -1.0468 29 1 4.0816 -5.3844 1.1937 30 1 5.2001 -4.0115 1.4729 31 1 4.0326 -3.6141 3.7368 32 1 1.4664 -4.7989 4.8188 33 1 3.3296 -2.6428 6.1286 34 1 1.8582 -3.4271 6.9165 35 1 2.9418 -5.7074 6.6714 36 1 4.4136 -4.9231 5.8836 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097258913.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:47 Heat of formation + Delta-G solvation = -5.472658 kcal Electronic energy + Delta-G solvation = -17466.584185 eV Core-core repulsion = 14758.437093 eV Total energy + Delta-G solvation = -2708.147092 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.60456 -37.78173 -36.39034 -33.16086 -32.41220 -30.79388 -28.64989 -26.14334 -23.43731 -22.39768 -22.24173 -20.94588 -20.11935 -19.38528 -17.21659 -16.32723 -15.77407 -15.47012 -14.57598 -14.35204 -14.20899 -13.96993 -13.20672 -12.82748 -12.60802 -12.40425 -12.19134 -11.63748 -11.57420 -11.14472 -11.02130 -10.90303 -10.74013 -10.65754 -10.48171 -10.27977 -10.00686 -9.98692 -9.59653 -9.05324 -8.45968 -8.40469 -7.23204 -6.01820 -4.11801 3.20575 3.25990 3.32127 3.32535 3.39115 4.00408 4.38456 4.83023 4.95124 4.99500 5.02721 5.12999 5.19246 5.28420 5.55247 5.57030 5.63950 5.82044 5.94930 5.98350 6.03964 6.12607 6.17147 6.24862 6.58916 6.64884 6.79506 6.82297 7.16878 7.57008 7.83725 7.96404 8.01840 8.22480 8.30560 8.85426 8.99123 9.53795 11.03574 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019538 B = 0.008266 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.725253 B = 3386.434679 C = 4117.800678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.057 0.943 9 C 0.178 3.822 10 N -0.498 5.498 11 C 0.036 3.964 12 C -0.126 4.126 13 C -0.114 4.114 14 C 0.049 3.951 15 H 0.099 0.901 16 C 0.535 3.465 17 O -0.515 6.515 18 N -0.713 5.713 19 C 0.090 3.910 20 C -0.198 4.198 21 C -0.195 4.195 22 H 0.263 0.737 23 H 0.028 0.972 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.397 0.603 32 H 0.135 0.865 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.442 -7.480 7.498 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.595 4.595 8 H 0.075 0.925 9 C 0.052 3.948 10 N -0.222 5.222 11 C -0.092 4.092 12 C -0.165 4.165 13 C -0.152 4.152 14 C -0.063 4.063 15 H 0.116 0.884 16 C 0.322 3.678 17 O -0.387 6.387 18 N -0.365 5.365 19 C -0.017 4.017 20 C -0.237 4.237 21 C -0.233 4.233 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.153 0.847 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.048 -8.099 7.450 14.246 hybrid contribution 1.366 2.070 0.032 2.480 sum 10.414 -6.029 7.482 14.169 Atomic orbital electron populations 1.69950 1.06033 1.26919 1.49341 1.24967 0.94747 0.99051 0.94876 0.86733 0.79726 0.83480 0.78534 1.20208 1.21128 1.20308 1.21689 0.93032 0.92220 1.52546 0.92499 1.19911 0.91446 0.84994 0.98470 1.64996 1.13139 1.45005 0.99091 1.22763 0.91047 1.00867 0.94524 1.22359 0.98179 1.00775 0.95147 1.22442 0.96363 0.99746 0.96682 1.22729 0.92679 1.00113 0.90815 0.88412 1.20611 0.86740 0.76492 0.83996 1.90654 1.16759 1.45498 1.85804 1.45436 1.15343 1.68881 1.06870 1.21489 0.98454 1.01361 0.80366 1.23404 1.03872 0.94899 1.01529 1.23350 0.99410 0.97556 1.02983 0.92695 0.95339 0.93627 0.92064 0.91753 0.91912 0.91797 0.91242 0.91583 0.76963 0.84691 0.88610 0.88284 0.88257 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.56 -15.29 6.93 -34.44 -0.24 -15.53 16 8 H 0.06 1.49 6.04 -52.49 -0.32 1.18 16 9 C 0.18 4.84 5.00 -4.98 -0.02 4.81 16 10 N -0.50 -11.33 4.87 -225.03 -1.10 -12.43 16 11 C 0.04 0.71 6.35 -2.75 -0.02 0.69 16 12 C -0.13 -1.92 6.93 -25.38 -0.18 -2.09 16 13 C -0.11 -1.71 6.42 -24.87 -0.16 -1.87 16 14 C 0.05 0.96 2.47 -66.68 -0.17 0.79 16 15 H 0.10 2.07 5.87 -51.93 -0.30 1.76 16 16 C 0.53 10.67 7.13 -10.99 -0.08 10.59 16 17 O -0.51 -12.49 15.22 5.55 0.08 -12.40 16 18 N -0.71 -10.78 5.51 -53.81 -0.30 -11.08 16 19 C 0.09 1.23 6.43 -67.93 -0.44 0.80 16 20 C -0.20 -2.22 10.46 -26.73 -0.28 -2.50 16 21 C -0.19 -1.95 10.46 -26.72 -0.28 -2.23 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 1.40 7.38 -51.93 -0.38 1.02 16 25 H 0.06 1.30 6.52 -51.93 -0.34 0.96 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.40 4.80 8.82 -40.82 -0.36 4.44 16 32 H 0.14 2.08 7.40 -51.93 -0.38 1.70 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 295.45 15.07 4.45 4.45 Total: -1.00 -32.61 295.45 -8.54 -41.15 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.45 Total: 4.69 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.95 Total: -4.74 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.66 Total: -49.40 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.61 -8.54 -41.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097258913.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.677 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds