Wall clock time and date at job start Sun Mar 29 2020 21:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00338 * 2 1 4 4 H 1.48501 * 109.47233 * 270.00031 * 3 2 1 5 5 H 1.48503 * 109.47084 * 29.99576 * 3 2 1 6 6 H 1.48503 * 109.47393 * 149.99869 * 3 2 1 7 7 C 1.37880 * 119.99475 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99416 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00408 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.47439 * 111.00045 * 290.12992 * 10 9 7 12 12 C 1.54322 * 107.36952 * 236.65966 * 11 10 9 13 13 C 1.55398 * 102.90031 * 337.89642 * 12 11 10 14 14 C 1.47843 * 110.99640 * 169.28284 * 10 9 7 15 15 H 1.09001 * 110.37314 * 27.42672 * 14 10 9 16 16 C 1.50698 * 110.37839 * 265.19319 * 14 10 9 17 17 O 1.21289 * 119.99477 * 0.02562 * 16 14 10 18 18 N 1.34769 * 120.00142 * 180.02562 * 16 14 10 19 19 C 1.46504 * 120.00126 * 180.02562 * 18 16 14 20 20 C 1.52995 * 117.49935 * 223.74984 * 19 18 16 21 21 C 1.53000 * 117.50210 * 155.08542 * 19 18 16 22 22 H 0.97000 * 120.00024 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46848 * 60.00649 * 9 7 2 24 24 H 1.08996 * 109.46914 * 300.00565 * 9 7 2 25 25 H 1.09002 * 109.88998 * 356.14887 * 11 10 9 26 26 H 1.09003 * 109.88733 * 117.17548 * 11 10 9 27 27 H 1.09005 * 110.70342 * 96.18020 * 12 11 10 28 28 H 1.08997 * 110.70605 * 219.41644 * 12 11 10 29 29 H 1.08995 * 110.87020 * 277.39488 * 13 12 11 30 30 H 1.08997 * 111.02640 * 153.63364 * 13 12 11 31 31 H 0.96995 * 120.00800 * 359.97438 * 18 16 14 32 32 H 1.09005 * 115.54435 * 9.41528 * 19 18 16 33 33 H 1.08990 * 117.50121 * 359.97438 * 20 19 18 34 34 H 1.09001 * 117.50002 * 145.02468 * 20 19 18 35 35 H 1.08997 * 117.49773 * 214.97926 * 21 19 18 36 36 H 1.08999 * 117.49348 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 2.9090 -3.7096 -1.2929 12 6 2.6659 -5.1289 -1.8478 13 6 2.3083 -5.9431 -0.5734 14 6 1.5190 -4.8997 0.2561 15 1 0.4833 -4.8501 -0.0800 16 6 1.5777 -5.2423 1.7225 17 8 2.1366 -4.4954 2.4977 18 7 1.0094 -6.3784 2.1724 19 6 1.0660 -6.7111 3.5981 20 6 1.4008 -8.1560 3.9735 21 6 -0.0250 -7.6289 4.1533 22 1 -0.4850 0.8400 -0.0004 23 1 0.6240 -2.5568 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.5122 -2.9675 -1.9858 26 1 3.9768 -3.5465 -1.1466 27 1 1.8334 -5.1302 -2.5516 28 1 3.5690 -5.5193 -2.3168 29 1 3.2099 -6.2582 -0.0483 30 1 1.6821 -6.8005 -0.8200 31 1 0.5621 -6.9755 1.5526 32 1 1.4400 -5.9220 4.2504 33 1 1.5785 -8.8591 3.1599 34 1 1.9946 -8.3176 4.8732 35 1 -0.3685 -7.4438 5.1710 36 1 -0.7852 -7.9847 3.4579 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097258914.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:49 Heat of formation + Delta-G solvation = -4.108484 kcal Electronic energy + Delta-G solvation = -17149.955811 eV Core-core repulsion = 14441.867874 eV Total energy + Delta-G solvation = -2708.087937 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.71372 -37.86592 -36.48697 -33.13393 -32.49071 -30.79203 -28.86994 -26.26829 -23.38571 -22.48866 -22.19224 -21.16162 -20.32120 -19.41571 -17.04088 -16.35941 -16.02436 -15.44345 -14.75930 -14.41714 -14.29602 -14.05793 -13.23225 -12.88324 -12.61509 -12.49718 -11.95443 -11.88885 -11.71462 -11.50015 -11.14277 -10.97607 -10.76257 -10.63495 -10.55831 -10.53253 -10.12126 -9.75358 -9.31740 -9.06493 -8.56151 -8.36775 -7.22443 -5.95611 -3.95520 3.06383 3.25737 3.37414 3.43304 3.49912 3.90251 4.49347 4.73898 4.79993 4.88652 4.93059 4.94880 5.06078 5.36673 5.40572 5.49635 5.52744 5.66746 5.72279 5.82721 5.95343 5.99005 6.02050 6.10143 6.27699 6.60082 6.70435 6.71145 7.18732 7.30676 7.73580 7.89991 8.11149 8.23155 8.56002 8.74935 9.11745 9.67891 11.15698 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026902 B = 0.006271 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.552538 B = 4464.134061 C = 5134.500198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.053 3.947 3 Si 0.899 3.101 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.499 4.499 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.505 5.505 11 C 0.054 3.946 12 C -0.142 4.142 13 C -0.116 4.116 14 C 0.054 3.946 15 H 0.072 0.928 16 C 0.524 3.476 17 O -0.501 6.501 18 N -0.714 5.714 19 C 0.089 3.911 20 C -0.198 4.198 21 C -0.194 4.194 22 H 0.260 0.740 23 H -0.008 1.008 24 H 0.028 0.972 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.396 0.604 32 H 0.136 0.864 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.705 -16.895 1.031 16.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.229 5.229 11 C -0.074 4.074 12 C -0.180 4.180 13 C -0.154 4.154 14 C -0.059 4.059 15 H 0.090 0.910 16 C 0.310 3.690 17 O -0.372 6.372 18 N -0.367 5.367 19 C -0.018 4.018 20 C -0.237 4.237 21 C -0.232 4.232 22 H 0.070 0.930 23 H 0.010 0.990 24 H 0.047 0.953 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.230 0.770 32 H 0.154 0.846 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.349 -16.028 1.986 16.207 hybrid contribution -0.594 0.426 -0.841 1.115 sum 0.754 -15.602 1.144 15.662 Atomic orbital electron populations 1.69962 1.06059 1.26662 1.51520 1.24981 0.94873 0.99299 0.95574 0.86479 0.79908 0.83039 0.77901 1.20802 1.21312 1.19728 1.21121 0.93594 0.89724 1.49313 0.91850 1.19907 0.89922 0.87586 0.95809 1.63239 1.28994 1.00761 1.29952 1.22687 0.99713 0.94583 0.90397 1.22883 1.01349 0.96920 0.96866 1.22680 1.00037 0.96592 0.96121 1.22412 0.98716 0.93508 0.91257 0.91043 1.20740 0.77541 0.79820 0.90907 1.90707 1.40950 1.48313 1.57245 1.45468 1.59466 1.24534 1.07208 1.21515 1.02373 0.93603 0.84277 1.23411 0.98475 0.98138 1.03637 1.23361 0.92421 1.04636 1.02811 0.93036 0.99018 0.95347 0.91761 0.91577 0.91645 0.91142 0.90690 0.91128 0.77029 0.84626 0.88734 0.88298 0.88128 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.29 55.43 0.74 -26.91 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.52 29.54 -169.99 -5.02 17.50 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.50 -14.73 8.66 -34.44 -0.30 -15.03 16 8 H 0.06 1.88 7.78 -52.48 -0.41 1.47 16 9 C 0.19 5.26 4.30 -4.97 -0.02 5.24 16 10 N -0.50 -11.52 4.33 -226.18 -0.98 -12.49 16 11 C 0.05 1.05 6.38 -2.84 -0.02 1.03 16 12 C -0.14 -2.04 6.97 -24.77 -0.17 -2.21 16 13 C -0.12 -1.60 6.47 -24.45 -0.16 -1.76 16 14 C 0.05 0.98 2.80 -67.34 -0.19 0.79 16 15 H 0.07 1.27 7.81 -51.93 -0.41 0.87 16 16 C 0.52 9.81 7.19 -10.99 -0.08 9.73 16 17 O -0.50 -11.91 16.05 5.55 0.09 -11.82 16 18 N -0.71 -9.79 5.55 -53.80 -0.30 -10.09 16 19 C 0.09 1.12 6.43 -67.93 -0.44 0.69 16 20 C -0.20 -1.88 10.46 -26.69 -0.28 -2.16 16 21 C -0.19 -1.84 10.46 -26.69 -0.28 -2.12 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H -0.01 -0.22 7.96 -51.93 -0.41 -0.63 16 24 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 25 H 0.06 1.35 7.31 -51.93 -0.38 0.97 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.40 4.14 8.83 -40.82 -0.36 3.78 16 32 H 0.14 2.01 7.40 -51.93 -0.38 1.62 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 302.31 15.07 4.56 4.56 Total: -1.00 -34.44 302.31 -8.65 -43.09 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.71 Total: 0.47 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.03 Total: -4.32 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.54 Total: -49.49 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.44 -8.65 -43.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097258914.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.986 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds