Wall clock time and date at job start Sun Mar 29 2020 21:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00338 * 2 1 4 4 H 1.48501 * 109.47233 * 270.00031 * 3 2 1 5 5 H 1.48503 * 109.47084 * 29.99576 * 3 2 1 6 6 H 1.48503 * 109.47393 * 149.99869 * 3 2 1 7 7 C 1.37880 * 119.99475 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99416 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00408 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.47439 * 111.00045 * 290.12992 * 10 9 7 12 12 C 1.54322 * 107.36952 * 236.65966 * 11 10 9 13 13 C 1.55398 * 102.90031 * 337.89642 * 12 11 10 14 14 C 1.47843 * 110.99640 * 169.28284 * 10 9 7 15 15 H 1.09001 * 110.37314 * 27.42672 * 14 10 9 16 16 C 1.50698 * 110.37839 * 265.19319 * 14 10 9 17 17 O 1.21289 * 119.99477 * 0.02562 * 16 14 10 18 18 N 1.34769 * 120.00142 * 180.02562 * 16 14 10 19 19 C 1.46504 * 120.00126 * 180.02562 * 18 16 14 20 20 C 1.52995 * 117.49935 * 223.74984 * 19 18 16 21 21 C 1.53000 * 117.50210 * 155.08542 * 19 18 16 22 22 H 0.97000 * 120.00024 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46848 * 60.00649 * 9 7 2 24 24 H 1.08996 * 109.46914 * 300.00565 * 9 7 2 25 25 H 1.09002 * 109.88998 * 356.14887 * 11 10 9 26 26 H 1.09003 * 109.88733 * 117.17548 * 11 10 9 27 27 H 1.09005 * 110.70342 * 96.18020 * 12 11 10 28 28 H 1.08997 * 110.70605 * 219.41644 * 12 11 10 29 29 H 1.08995 * 110.87020 * 277.39488 * 13 12 11 30 30 H 1.08997 * 111.02640 * 153.63364 * 13 12 11 31 31 H 0.96995 * 120.00800 * 359.97438 * 18 16 14 32 32 H 1.09005 * 115.54435 * 9.41528 * 19 18 16 33 33 H 1.08990 * 117.50121 * 359.97438 * 20 19 18 34 34 H 1.09001 * 117.50002 * 145.02468 * 20 19 18 35 35 H 1.08997 * 117.49773 * 214.97926 * 21 19 18 36 36 H 1.08999 * 117.49348 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 2.9090 -3.7096 -1.2929 12 6 2.6659 -5.1289 -1.8478 13 6 2.3083 -5.9431 -0.5734 14 6 1.5190 -4.8997 0.2561 15 1 0.4833 -4.8501 -0.0800 16 6 1.5777 -5.2423 1.7225 17 8 2.1366 -4.4954 2.4977 18 7 1.0094 -6.3784 2.1724 19 6 1.0660 -6.7111 3.5981 20 6 1.4008 -8.1560 3.9735 21 6 -0.0250 -7.6289 4.1533 22 1 -0.4850 0.8400 -0.0004 23 1 0.6240 -2.5568 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.5122 -2.9675 -1.9858 26 1 3.9768 -3.5465 -1.1466 27 1 1.8334 -5.1302 -2.5516 28 1 3.5690 -5.5193 -2.3168 29 1 3.2099 -6.2582 -0.0483 30 1 1.6821 -6.8005 -0.8200 31 1 0.5621 -6.9755 1.5526 32 1 1.4400 -5.9220 4.2504 33 1 1.5785 -8.8591 3.1599 34 1 1.9946 -8.3176 4.8732 35 1 -0.3685 -7.4438 5.1710 36 1 -0.7852 -7.9847 3.4579 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097258914.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:48 Heat of formation + Delta-G solvation = -30.103513 kcal Electronic energy + Delta-G solvation = -17151.083040 eV Core-core repulsion = 14441.867874 eV Total energy + Delta-G solvation = -2709.215166 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12854 -39.19478 -37.73932 -35.20246 -33.85642 -32.52820 -30.26581 -28.31130 -24.98134 -23.87594 -23.24205 -22.32656 -21.71694 -20.91523 -18.60556 -18.14216 -17.48146 -17.02670 -16.31204 -15.98748 -15.63781 -15.35457 -14.84481 -14.44353 -14.15046 -13.88549 -13.62117 -13.59904 -12.92664 -12.80465 -12.52726 -12.47362 -12.37620 -12.25559 -11.96949 -11.90431 -11.55131 -11.44263 -11.34699 -10.71209 -10.63361 -9.67832 -9.00069 -8.23206 -6.33040 1.36483 1.39737 1.51590 1.66752 2.06067 2.38904 3.02075 3.08611 3.33870 3.65166 3.72662 3.83682 4.07757 4.11897 4.13053 4.15576 4.31715 4.64303 4.78085 4.80451 4.87803 4.90030 4.97552 5.05017 5.08915 5.10864 5.19051 5.23910 5.37884 5.59213 5.63141 6.01192 6.32658 6.44252 6.70191 6.81686 7.36113 7.39361 8.88060 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026902 B = 0.006271 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.552538 B = 4464.134061 C = 5134.500198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.216 3.784 10 N -0.531 5.531 11 C 0.048 3.952 12 C -0.128 4.128 13 C -0.100 4.100 14 C 0.045 3.955 15 H 0.074 0.926 16 C 0.521 3.479 17 O -0.568 6.568 18 N -0.690 5.690 19 C 0.043 3.957 20 C -0.173 4.173 21 C -0.172 4.172 22 H 0.265 0.735 23 H -0.027 1.027 24 H -0.014 1.014 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.415 0.585 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 -19.182 0.263 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.561 4.561 8 H 0.073 0.927 9 C 0.089 3.911 10 N -0.255 5.255 11 C -0.080 4.080 12 C -0.166 4.166 13 C -0.138 4.138 14 C -0.067 4.067 15 H 0.092 0.908 16 C 0.307 3.693 17 O -0.444 6.444 18 N -0.342 5.342 19 C -0.063 4.063 20 C -0.211 4.211 21 C -0.210 4.210 22 H 0.074 0.926 23 H -0.009 1.009 24 H 0.004 0.996 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.253 0.747 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.602 -18.397 1.202 18.506 hybrid contribution -0.722 1.061 -0.547 1.395 sum 0.880 -17.337 0.655 17.371 Atomic orbital electron populations 1.70080 1.07654 1.27935 1.51875 1.25935 0.95854 1.03246 0.94701 0.85353 0.78319 0.78039 0.78730 1.18989 1.20459 1.19578 1.21416 0.93386 0.91344 1.49948 0.92687 1.19422 0.89797 0.89175 0.92679 1.63033 1.28526 1.01739 1.32218 1.22723 0.98762 0.97767 0.88753 1.22837 1.03410 0.93114 0.97233 1.22716 1.00171 0.96436 0.94461 1.22594 0.99252 0.92891 0.91968 0.90812 1.20905 0.77143 0.80436 0.90777 1.90674 1.44399 1.50750 1.58602 1.45166 1.57718 1.23056 1.08272 1.21579 1.06783 0.94867 0.83110 1.23493 0.98372 0.94996 1.04246 1.23472 0.92583 1.01634 1.03351 0.92606 1.00944 0.99610 0.94220 0.91894 0.90377 0.87931 0.90539 0.86325 0.74739 0.87962 0.86941 0.87350 0.87229 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.02 13.29 21.45 0.28 -58.73 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 47.09 29.54 68.60 2.03 49.11 16 4 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.52 -32.27 8.66 25.60 0.22 -32.05 16 8 H 0.05 3.40 7.78 -2.91 -0.02 3.37 16 9 C 0.22 12.48 4.30 85.56 0.37 12.85 16 10 N -0.53 -25.16 4.33 -869.49 -3.76 -28.92 16 11 C 0.05 1.87 6.38 86.65 0.55 2.42 16 12 C -0.13 -3.34 6.97 31.87 0.22 -3.11 16 13 C -0.10 -2.46 6.47 32.07 0.21 -2.25 16 14 C 0.05 1.65 2.80 44.64 0.13 1.78 16 15 H 0.07 2.64 7.81 -2.39 -0.02 2.62 16 16 C 0.52 19.95 7.19 87.66 0.63 20.58 16 17 O -0.57 -28.62 16.05 -3.06 -0.05 -28.67 16 18 N -0.69 -18.30 5.55 -442.53 -2.45 -20.75 16 19 C 0.04 1.05 6.43 44.99 0.29 1.34 16 20 C -0.17 -2.79 10.46 30.62 0.32 -2.47 16 21 C -0.17 -2.82 10.46 30.62 0.32 -2.50 16 22 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 23 H -0.03 -1.61 7.96 -2.39 -0.02 -1.63 16 24 H -0.01 -0.92 8.07 -2.39 -0.02 -0.94 16 25 H 0.04 1.72 7.31 -2.39 -0.02 1.70 16 26 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.08 1.91 8.05 -2.39 -0.02 1.89 16 30 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.42 7.59 8.83 -92.71 -0.82 6.77 16 32 H 0.10 3.23 7.40 -2.38 -0.02 3.22 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -80.81 302.31 0.01 -80.80 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.24 Total: 10.09 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 3.72 Total: -2.93 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -5.93 Total: -108.40 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.05 Total: -28.67 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -80.81 0.01 -80.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097258914.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.693 kcal (2) G-P(sol) polarization free energy of solvation -80.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds