Wall clock time and date at job start Sun Mar 29 2020 22:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.46997 * 2 1 4 4 N 1.30172 * 126.80018 * 270.01710 * 3 2 1 5 5 O 1.20924 * 111.61017 * 179.97438 * 4 3 2 6 6 C 1.34047 * 111.55980 * 359.76483 * 5 4 3 7 7 C 1.50700 * 126.77345 * 180.28522 * 6 5 4 8 8 C 1.35451 * 106.44806 * 0.38088 * 6 5 4 9 9 C 1.50694 * 128.00740 * 179.91006 * 8 6 5 10 10 N 1.46905 * 109.47033 * 269.67973 * 9 8 6 11 11 C 1.46900 * 110.99850 * 293.95020 * 10 9 8 12 12 C 1.46906 * 111.00051 * 170.00053 * 10 9 8 13 13 C 1.50699 * 109.47140 * 189.99841 * 12 10 9 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 10 15 15 C 1.37873 * 119.99861 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99892 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00241 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47135 * 90.00125 * 17 15 13 19 19 H 1.48503 * 109.47215 * 210.00315 * 17 15 13 20 20 H 1.48508 * 109.46958 * 330.00276 * 17 15 13 21 21 H 1.09003 * 109.46938 * 60.00208 * 1 2 3 22 22 H 1.09006 * 109.47109 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47368 * 300.00153 * 1 2 3 24 24 H 1.08994 * 109.47514 * 239.99520 * 2 1 3 25 25 H 1.09000 * 109.47121 * 119.99297 * 2 1 3 26 26 H 1.09001 * 109.47340 * 270.10976 * 7 6 5 27 27 H 1.09000 * 109.47379 * 30.11316 * 7 6 5 28 28 H 1.09005 * 109.46956 * 150.11868 * 7 6 5 29 29 H 1.08997 * 109.47644 * 149.68094 * 9 8 6 30 30 H 1.09000 * 109.47199 * 29.67371 * 9 8 6 31 31 H 1.08996 * 109.47030 * 296.04770 * 11 10 9 32 32 H 1.08999 * 109.46702 * 56.04909 * 11 10 9 33 33 H 1.08996 * 109.46890 * 176.04778 * 11 10 9 34 34 H 1.09004 * 109.47040 * 309.99779 * 12 10 9 35 35 H 1.09000 * 109.47033 * 69.99731 * 12 10 9 36 36 H 0.97002 * 119.99998 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2919 2.1561 -1.0423 5 8 2.6804 3.2565 -0.7255 6 6 2.7252 3.3984 0.6067 7 6 3.1508 4.6265 1.3694 8 6 2.3144 2.2194 1.1320 9 6 2.1824 1.8474 2.5863 10 7 3.4453 1.2646 3.0593 11 6 3.7155 -0.0168 2.3938 12 6 3.4385 1.1082 4.5199 13 6 4.8222 0.7436 4.9925 14 1 5.6262 0.6383 4.2791 15 6 5.0616 0.5436 6.3355 16 7 6.2693 0.2260 6.7480 17 14 3.6708 0.7251 7.5694 18 1 2.9943 -0.5846 7.7490 19 1 4.2205 1.1810 8.8714 20 1 2.6919 1.7233 7.0686 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 4.2241 4.5852 1.5550 27 1 2.9172 5.5164 0.7848 28 1 2.6190 4.6663 2.3200 29 1 1.3799 1.1192 2.7037 30 1 1.9525 2.7387 3.1700 31 1 2.9433 -0.7368 2.6647 32 1 3.7149 0.1276 1.3135 33 1 4.6889 -0.3920 2.7097 34 1 3.1310 2.0452 4.9843 35 1 2.7400 0.3188 4.7975 36 1 6.4376 0.0848 7.6928 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119577289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:45 Heat of formation + Delta-G solvation = 54.942147 kcal Electronic energy + Delta-G solvation = -17350.580185 eV Core-core repulsion = 14645.052876 eV Total energy + Delta-G solvation = -2705.527309 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.69095 -37.34811 -35.05554 -33.51047 -32.35279 -31.22112 -28.70140 -27.52568 -26.85450 -24.23329 -24.00455 -21.24878 -20.10488 -19.63863 -17.44143 -17.04473 -16.53331 -14.92517 -14.85079 -14.54278 -14.30609 -14.06438 -13.42448 -13.32270 -13.08176 -12.70059 -12.55159 -12.35177 -11.96595 -11.87612 -11.53710 -11.44286 -11.28129 -11.02373 -10.74514 -10.52220 -10.28300 -9.92145 -9.67878 -9.34314 -8.89594 -8.61181 -7.45440 -6.08481 -4.06282 1.69585 2.40597 3.24768 3.32769 3.33272 3.33545 4.29033 4.38143 4.60595 4.86784 5.08138 5.12026 5.20027 5.24422 5.26748 5.41179 5.58087 5.64844 5.66313 5.79080 5.84989 5.98379 6.03601 6.05760 6.08293 6.16144 6.23648 6.35535 6.64507 6.78277 6.92759 7.53222 7.83152 7.96326 8.48912 8.61329 9.00284 9.52675 11.04610 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029504 B = 0.006472 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.782457 B = 4325.258065 C = 4703.409070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C 0.029 3.971 4 N -0.374 5.374 5 O 0.088 5.912 6 C -0.021 4.021 7 C -0.068 4.068 8 C -0.181 4.181 9 C 0.127 3.873 10 N -0.524 5.524 11 C 0.034 3.966 12 C 0.162 3.838 13 C -0.510 4.510 14 H 0.081 0.919 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.267 1.267 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.014 0.986 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.029 0.971 35 H -0.015 1.015 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.804 4.190 -10.566 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 C -0.130 4.130 4 N -0.081 5.081 5 O 0.025 5.975 6 C -0.085 4.085 7 C -0.126 4.126 8 C -0.185 4.185 9 C -0.002 4.002 10 N -0.248 5.248 11 C -0.114 4.114 12 C 0.036 3.964 13 C -0.548 4.548 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.702 3.298 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.192 1.192 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.002 0.998 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.376 4.288 -11.830 16.309 hybrid contribution -1.254 -0.637 1.767 2.259 sum -11.630 3.650 -10.063 15.806 Atomic orbital electron populations 1.21704 0.94223 1.02074 1.02188 1.20106 0.96249 0.88704 1.04142 1.23365 1.02024 0.98884 0.88723 1.73763 1.17308 0.92952 1.24044 1.84748 1.63140 1.26814 1.22834 1.24212 1.01790 0.99172 0.83292 1.20300 1.03382 0.90692 0.98196 1.20927 1.06996 0.93171 0.97400 1.20307 0.92392 0.99604 0.87892 1.61978 1.29397 1.25384 1.08078 1.22372 1.01786 0.89837 0.97395 1.20221 0.97968 0.95477 0.82724 1.21011 0.93971 1.46582 0.93211 0.90120 1.24896 0.95383 0.94838 0.98178 1.69891 1.20276 1.48093 1.15577 0.86873 0.82884 0.78813 0.81211 1.20369 1.21110 1.19171 0.92653 0.91780 0.92371 0.90309 0.88988 0.88915 0.90579 0.89110 0.94516 0.90133 0.96773 0.93196 0.90231 0.95286 0.99753 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.89 37.15 0.37 -1.21 16 2 C -0.05 -0.70 5.98 -27.89 -0.17 -0.87 16 3 C 0.03 0.45 5.66 -82.10 -0.46 -0.01 16 4 N -0.37 -6.13 12.07 33.42 0.40 -5.72 16 5 O 0.09 1.37 11.20 17.16 0.19 1.57 16 6 C -0.02 -0.30 7.49 -35.30 -0.26 -0.57 16 7 C -0.07 -0.76 10.30 36.01 0.37 -0.39 16 8 C -0.18 -2.85 5.11 -104.43 -0.53 -3.39 16 9 C 0.13 2.11 5.29 -4.98 -0.03 2.09 16 10 N -0.52 -10.69 4.74 -245.82 -1.17 -11.86 16 11 C 0.03 0.66 7.97 60.06 0.48 1.14 16 12 C 0.16 3.80 3.79 -4.97 -0.02 3.78 16 13 C -0.51 -14.17 9.07 -34.44 -0.31 -14.48 16 14 H 0.08 2.46 7.35 -52.48 -0.39 2.08 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 17 Si 0.87 20.98 27.47 -169.99 -4.67 16.31 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.09 1.22 5.51 -51.93 -0.29 0.93 16 26 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.96 7.44 -51.93 -0.39 0.57 16 29 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.08 1.26 7.23 -51.93 -0.38 0.88 16 31 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 32 H 0.05 0.88 5.32 -51.93 -0.28 0.60 16 33 H 0.08 1.70 6.86 -51.93 -0.36 1.34 16 34 H 0.03 0.68 6.99 -51.93 -0.36 0.31 16 35 H -0.02 -0.36 7.55 -51.93 -0.39 -0.75 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 293.30 15.07 4.42 4.42 Total: -1.00 -30.88 293.30 -6.05 -36.93 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.34 Total: -3.20 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -0.67 Total: -12.05 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.01 Total: -43.97 kcal Atomic # 8 Polarization: 1.37 SS G_CDS: 0.19 Total: 1.57 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.88 -6.05 -36.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119577289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.875 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds