Wall clock time and date at job start Sun Mar 29 2020 22:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.46997 * 2 1 4 4 N 1.30172 * 126.80018 * 270.01710 * 3 2 1 5 5 O 1.20924 * 111.61017 * 179.97438 * 4 3 2 6 6 C 1.34047 * 111.55980 * 359.76483 * 5 4 3 7 7 C 1.50700 * 126.77345 * 180.28522 * 6 5 4 8 8 C 1.35451 * 106.44806 * 0.38088 * 6 5 4 9 9 C 1.50694 * 128.00740 * 179.91006 * 8 6 5 10 10 N 1.46905 * 109.47033 * 269.67973 * 9 8 6 11 11 C 1.46900 * 110.99850 * 293.95020 * 10 9 8 12 12 C 1.46906 * 111.00051 * 170.00053 * 10 9 8 13 13 C 1.50699 * 109.47140 * 189.99841 * 12 10 9 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 10 15 15 C 1.37873 * 119.99861 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99892 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00241 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47135 * 90.00125 * 17 15 13 19 19 H 1.48503 * 109.47215 * 210.00315 * 17 15 13 20 20 H 1.48508 * 109.46958 * 330.00276 * 17 15 13 21 21 H 1.09003 * 109.46938 * 60.00208 * 1 2 3 22 22 H 1.09006 * 109.47109 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47368 * 300.00153 * 1 2 3 24 24 H 1.08994 * 109.47514 * 239.99520 * 2 1 3 25 25 H 1.09000 * 109.47121 * 119.99297 * 2 1 3 26 26 H 1.09001 * 109.47340 * 270.10976 * 7 6 5 27 27 H 1.09000 * 109.47379 * 30.11316 * 7 6 5 28 28 H 1.09005 * 109.46956 * 150.11868 * 7 6 5 29 29 H 1.08997 * 109.47644 * 149.68094 * 9 8 6 30 30 H 1.09000 * 109.47199 * 29.67371 * 9 8 6 31 31 H 1.08996 * 109.47030 * 296.04770 * 11 10 9 32 32 H 1.08999 * 109.46702 * 56.04909 * 11 10 9 33 33 H 1.08996 * 109.46890 * 176.04778 * 11 10 9 34 34 H 1.09004 * 109.47040 * 309.99779 * 12 10 9 35 35 H 1.09000 * 109.47033 * 69.99731 * 12 10 9 36 36 H 0.97002 * 119.99998 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2919 2.1561 -1.0423 5 8 2.6804 3.2565 -0.7255 6 6 2.7252 3.3984 0.6067 7 6 3.1508 4.6265 1.3694 8 6 2.3144 2.2194 1.1320 9 6 2.1824 1.8474 2.5863 10 7 3.4453 1.2646 3.0593 11 6 3.7155 -0.0168 2.3938 12 6 3.4385 1.1082 4.5199 13 6 4.8222 0.7436 4.9925 14 1 5.6262 0.6383 4.2791 15 6 5.0616 0.5436 6.3355 16 7 6.2693 0.2260 6.7480 17 14 3.6708 0.7251 7.5694 18 1 2.9943 -0.5846 7.7490 19 1 4.2205 1.1810 8.8714 20 1 2.6919 1.7233 7.0686 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 4.2241 4.5852 1.5550 27 1 2.9172 5.5164 0.7848 28 1 2.6190 4.6663 2.3200 29 1 1.3799 1.1192 2.7037 30 1 1.9525 2.7387 3.1700 31 1 2.9433 -0.7368 2.6647 32 1 3.7149 0.1276 1.3135 33 1 4.6889 -0.3920 2.7097 34 1 3.1310 2.0452 4.9843 35 1 2.7400 0.3188 4.7975 36 1 6.4376 0.0848 7.6928 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119577289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:45 Heat of formation + Delta-G solvation = 34.413300 kcal Electronic energy + Delta-G solvation = -17351.470382 eV Core-core repulsion = 14645.052876 eV Total energy + Delta-G solvation = -2706.417507 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.87129 -38.82636 -36.30189 -34.87169 -34.21559 -32.27595 -30.33869 -28.99113 -28.10872 -25.74409 -25.17933 -22.82758 -21.56558 -20.77867 -19.02097 -18.60764 -17.85693 -16.64786 -16.17431 -16.08019 -15.69818 -15.25833 -14.87738 -14.54111 -14.29673 -14.03182 -13.75365 -13.63064 -13.47489 -13.09391 -12.96499 -12.64225 -12.60399 -12.49794 -12.33367 -11.97495 -11.77151 -11.62197 -11.46069 -10.87450 -10.76172 -10.08179 -9.04352 -8.25325 -6.29227 0.53845 1.21575 1.38288 1.39943 1.50625 2.22760 2.37298 3.08096 3.18273 3.36550 3.53867 3.92844 4.03431 4.21597 4.29909 4.38777 4.44390 4.51206 4.59811 4.66574 4.70046 4.78338 4.86316 4.91851 4.99482 5.02916 5.05417 5.08146 5.19419 5.25180 5.31775 5.54936 5.98007 6.30522 6.64478 6.77477 7.32647 7.34446 8.91414 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029504 B = 0.006472 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.782457 B = 4325.258065 C = 4703.409070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.056 4.056 3 C 0.028 3.972 4 N -0.396 5.396 5 O 0.081 5.919 6 C -0.012 4.012 7 C -0.069 4.069 8 C -0.204 4.204 9 C 0.133 3.867 10 N -0.541 5.541 11 C 0.043 3.957 12 C 0.172 3.828 13 C -0.516 4.516 14 H 0.034 0.966 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.948 3.052 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.241 1.241 21 H 0.052 0.948 22 H 0.084 0.916 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.039 0.961 35 H -0.009 1.009 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.262 4.935 -10.361 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.094 4.094 3 C -0.131 4.131 4 N -0.104 5.104 5 O 0.020 5.980 6 C -0.076 4.076 7 C -0.126 4.126 8 C -0.209 4.209 9 C 0.005 3.995 10 N -0.265 5.265 11 C -0.105 4.105 12 C 0.045 3.955 13 C -0.554 4.554 14 H 0.053 0.947 15 C -0.190 4.190 16 N -0.591 5.591 17 Si 0.771 3.229 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.165 1.165 21 H 0.071 0.929 22 H 0.103 0.897 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.009 0.991 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.845 5.054 -11.658 18.068 hybrid contribution -0.404 -0.859 1.596 1.857 sum -13.250 4.195 -10.062 17.158 Atomic orbital electron populations 1.21671 0.92530 1.03387 1.01986 1.20219 0.97688 0.87318 1.04220 1.23766 1.01167 0.99747 0.88422 1.73756 1.18542 0.93451 1.24687 1.84731 1.63246 1.26704 1.23341 1.24813 0.99910 0.99900 0.83017 1.20480 1.03100 0.90419 0.98638 1.20931 1.08884 0.93999 0.97072 1.20286 0.90675 1.00105 0.88439 1.61838 1.32244 1.25923 1.06473 1.22243 1.00343 0.89871 0.98029 1.19984 0.95001 0.95733 0.84747 1.21251 0.95187 1.46254 0.92727 0.94735 1.25863 0.98221 0.94393 1.00537 1.70059 1.23029 1.49811 1.16213 0.85713 0.79564 0.79667 0.77976 1.19520 1.20979 1.16456 0.92874 0.89740 0.92505 0.89773 0.89282 0.89251 0.87766 0.88148 0.93329 0.88774 0.95423 0.91770 0.93583 0.94309 0.99145 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.89 71.98 0.71 -1.98 16 2 C -0.06 -1.36 5.98 29.85 0.18 -1.18 16 3 C 0.03 0.83 5.66 43.58 0.25 1.08 16 4 N -0.40 -12.52 12.07 -49.54 -0.60 -13.12 16 5 O 0.08 2.42 11.20 71.57 0.80 3.22 16 6 C -0.01 -0.34 7.49 25.04 0.19 -0.15 16 7 C -0.07 -1.38 10.30 71.24 0.73 -0.65 16 8 C -0.20 -6.09 5.11 -19.74 -0.10 -6.19 16 9 C 0.13 4.11 5.29 85.55 0.45 4.56 16 10 N -0.54 -21.42 4.74 -931.65 -4.42 -25.84 16 11 C 0.04 1.65 7.97 127.69 1.02 2.67 16 12 C 0.17 7.80 3.79 85.56 0.32 8.12 16 13 C -0.52 -29.11 9.07 25.60 0.23 -28.88 16 14 H 0.03 2.21 7.35 -2.91 -0.02 2.19 16 15 C 0.01 0.39 5.47 84.65 0.46 0.86 16 16 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 17 Si 0.95 42.39 27.47 68.60 1.88 44.27 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 21 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.09 2.19 5.51 -2.39 -0.01 2.18 16 26 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 28 H 0.10 1.83 7.44 -2.38 -0.02 1.81 16 29 H 0.05 1.40 8.12 -2.39 -0.02 1.38 16 30 H 0.09 2.64 7.23 -2.39 -0.02 2.62 16 31 H 0.03 0.96 7.57 -2.39 -0.02 0.94 16 32 H 0.06 2.23 5.32 -2.39 -0.01 2.21 16 33 H 0.05 2.03 6.86 -2.39 -0.02 2.02 16 34 H 0.04 1.69 6.99 -2.38 -0.02 1.68 16 35 H -0.01 -0.40 7.55 -2.39 -0.02 -0.42 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -67.19 293.30 3.42 -63.77 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.01 Total: 7.92 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 4.45 Total: -21.74 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -4.72 Total: -97.44 kcal Atomic # 8 Polarization: 2.42 SS G_CDS: 0.80 Total: 3.22 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.27 kcal Total: -67.19 3.42 -63.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119577289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.184 kcal (2) G-P(sol) polarization free energy of solvation -67.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds