Wall clock time and date at job start Sun Mar 29 2020 22:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00003 * 2 1 4 4 H 1.48504 * 109.46993 * 85.24921 * 3 2 1 5 5 H 1.48501 * 109.47204 * 325.25298 * 3 2 1 6 6 H 1.48492 * 109.47289 * 205.25204 * 3 2 1 7 7 C 1.38808 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99724 * 196.15587 * 7 2 1 9 9 N 1.36932 * 120.00528 * 16.14901 * 7 2 1 10 10 C 1.43466 * 118.94388 * 205.18001 * 9 7 2 11 11 C 1.53241 * 108.26018 * 273.77957 * 10 9 7 12 12 C 1.47138 * 111.81031 * 281.67569 * 11 10 9 13 13 N 1.48214 * 110.34643 * 58.22849 * 12 11 10 14 14 C 1.34772 * 119.97145 * 102.50698 * 13 12 11 15 15 O 1.21282 * 120.00479 * 359.97438 * 14 13 12 16 16 C 1.50708 * 120.00032 * 179.97438 * 14 13 12 17 17 C 1.52998 * 117.49493 * 248.62673 * 16 14 13 18 18 C 1.52997 * 117.49990 * 180.02562 * 16 14 13 19 19 C 1.43626 * 120.05570 * 282.48745 * 13 12 11 20 20 C 1.48860 * 118.93927 * 25.44199 * 9 7 2 21 21 H 0.97006 * 119.99800 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.75903 * 33.23971 * 10 9 7 23 23 H 1.08997 * 109.76339 * 154.00945 * 10 9 7 24 24 H 1.09003 * 109.07884 * 161.04111 * 11 10 9 25 25 H 1.09001 * 108.90624 * 42.19617 * 11 10 9 26 26 H 1.09005 * 109.32693 * 297.96356 * 12 11 10 27 27 H 1.08999 * 109.32580 * 178.49435 * 12 11 10 28 28 H 1.08997 * 115.54920 * 34.32710 * 16 14 13 29 29 H 1.08994 * 117.50457 * 359.97438 * 17 16 14 30 30 H 1.09003 * 117.49759 * 145.02218 * 17 16 14 31 31 H 1.08995 * 117.49447 * 214.98184 * 18 16 14 32 32 H 1.08998 * 117.49644 * 359.97438 * 18 16 14 33 33 H 1.09004 * 108.87380 * 329.88514 * 19 13 12 34 34 H 1.09000 * 108.79055 * 211.39220 * 19 13 12 35 35 H 1.09002 * 109.47908 * 260.60579 * 20 9 7 36 36 H 1.09000 * 109.47804 * 20.63425 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3973 2.1044 1.3953 5 1 1.5015 2.6217 -0.7980 6 1 3.5943 1.4133 -0.5972 7 6 2.0102 -1.2021 -0.0005 8 1 3.0582 -1.2207 0.2597 9 7 1.3661 -2.3645 -0.3309 10 6 1.8755 -3.6077 0.1724 11 6 2.9574 -4.1084 -0.7904 12 6 2.3759 -4.7277 -1.9918 13 7 1.5030 -3.7608 -2.6989 14 6 1.9467 -3.1410 -3.8103 15 8 3.0600 -3.3740 -4.2312 16 6 1.0595 -2.1581 -4.5301 17 6 0.5356 -2.5590 -5.9106 18 6 1.6206 -1.4881 -5.7859 19 6 0.1845 -3.4843 -2.2009 20 6 0.1634 -2.2981 -1.2055 21 1 -0.4850 0.8401 -0.0004 22 1 2.3102 -3.4549 1.1603 23 1 1.0694 -4.3388 0.2328 24 1 3.5785 -4.8429 -0.2777 25 1 3.5798 -3.2657 -1.0914 26 1 1.7880 -5.5981 -1.7003 27 1 3.1779 -5.0442 -2.6586 28 1 0.4017 -1.5655 -3.8944 29 1 0.8329 -3.5333 -6.2984 30 1 -0.4672 -2.2301 -6.1833 31 1 1.3319 -0.4545 -5.9765 32 1 2.6316 -1.7578 -6.0912 33 1 -0.1962 -4.3733 -1.6981 34 1 -0.4667 -3.2497 -3.0429 35 1 -0.7357 -2.3543 -0.5920 36 1 0.1679 -1.3590 -1.7589 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121465424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:46 Heat of formation + Delta-G solvation = 20.125728 kcal Electronic energy + Delta-G solvation = -18190.567902 eV Core-core repulsion = 15483.530840 eV Total energy + Delta-G solvation = -2707.037063 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.85638 -37.31670 -35.68735 -34.17633 -32.65222 -30.85354 -27.59948 -25.82581 -24.02002 -23.63063 -22.23103 -21.07077 -19.72931 -18.28233 -17.24012 -16.31408 -15.92500 -15.09279 -14.90759 -14.22592 -13.94403 -13.57132 -13.28164 -13.10917 -12.51225 -12.37445 -11.96462 -11.74264 -11.40006 -11.30046 -10.98964 -10.74397 -10.54852 -10.38700 -10.30384 -10.18772 -10.09252 -9.82996 -9.68525 -9.25445 -8.46756 -8.00056 -6.69187 -5.79744 -3.20429 2.97131 3.36843 3.44503 3.49263 3.55168 4.15397 4.51217 4.89321 5.07144 5.14907 5.29986 5.38872 5.46230 5.63080 5.69823 5.72260 5.82348 5.95081 6.00676 6.12616 6.15528 6.20093 6.32444 6.35281 6.47501 6.56398 6.83912 6.95532 7.07211 7.38841 7.48121 7.81289 8.03193 8.44296 8.73820 9.20904 9.88967 10.34278 11.28548 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.010756 C = 0.008609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.151759 B = 2602.619043 C = 3251.791682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.004 3.996 3 Si 0.897 3.103 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.063 0.937 9 N -0.590 5.590 10 C 0.163 3.837 11 C -0.170 4.170 12 C 0.130 3.870 13 N -0.581 5.581 14 C 0.551 3.449 15 O -0.561 6.561 16 C -0.185 4.185 17 C -0.158 4.158 18 C -0.150 4.150 19 C 0.081 3.919 20 C 0.164 3.836 21 H 0.252 0.748 22 H 0.045 0.955 23 H 0.033 0.967 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 -6.996 -6.993 10.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.194 4.194 3 Si 0.727 3.273 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.081 0.919 9 N -0.312 5.312 10 C 0.034 3.966 11 C -0.211 4.211 12 C 0.008 3.992 13 N -0.311 5.311 14 C 0.339 3.661 15 O -0.441 6.441 16 C -0.206 4.206 17 C -0.195 4.195 18 C -0.188 4.188 19 C -0.045 4.045 20 C 0.038 3.962 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.147 0.853 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.054 -7.010 -7.179 10.089 hybrid contribution 0.342 1.057 0.238 1.136 sum -0.712 -5.953 -6.942 9.172 Atomic orbital electron populations 1.70030 1.05105 1.25338 1.54851 1.24937 0.95266 0.98175 1.01018 0.86355 0.79415 0.83963 0.77576 1.21517 1.21549 1.20486 1.19163 0.92533 0.85133 1.41201 0.91886 1.43623 1.31408 1.01795 1.54348 1.20172 0.93572 0.88315 0.94502 1.21795 1.01066 1.00780 0.97508 1.20540 0.94100 0.90305 0.94248 1.47273 1.16188 1.42350 1.25312 1.19505 0.86373 0.79942 0.80230 1.90599 1.20827 1.64836 1.67797 1.22277 1.04126 1.02757 0.91456 1.22870 0.99217 1.00364 0.97085 1.22877 0.99326 0.97617 0.98953 1.22191 0.82856 1.00787 0.98670 1.21909 0.89365 0.94754 0.90159 0.93746 0.93656 0.94861 0.92631 0.91335 0.92174 0.90619 0.85327 0.88743 0.88137 0.88235 0.87787 0.92140 0.91373 0.93998 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.53 11.03 55.49 0.61 -24.91 16 2 C 0.00 0.11 4.90 -17.43 -0.09 0.02 16 3 Si 0.90 21.94 29.58 -169.99 -5.03 16.91 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.82 9.26 -15.06 -0.14 -6.96 16 8 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.26 2.55 -172.35 -0.44 -14.69 16 10 C 0.16 3.33 5.59 -5.52 -0.03 3.30 16 11 C -0.17 -3.16 5.63 -29.42 -0.17 -3.32 16 12 C 0.13 2.24 5.69 -5.91 -0.03 2.21 16 13 N -0.58 -10.82 2.46 -176.65 -0.43 -11.25 16 14 C 0.55 10.88 7.45 -10.98 -0.08 10.80 16 15 O -0.56 -12.54 15.69 5.56 0.09 -12.45 16 16 C -0.19 -3.10 4.76 -91.77 -0.44 -3.54 16 17 C -0.16 -2.07 10.23 -26.75 -0.27 -2.34 16 18 C -0.15 -2.21 10.04 -26.75 -0.27 -2.48 16 19 C 0.08 1.41 4.88 -4.58 -0.02 1.39 16 20 C 0.16 3.65 5.12 -1.75 -0.01 3.64 16 21 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 22 H 0.05 0.95 8.02 -51.93 -0.42 0.53 16 23 H 0.03 0.62 7.58 -51.93 -0.39 0.23 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 1.52 7.91 -51.93 -0.41 1.10 16 26 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 27 H 0.08 1.34 7.12 -51.93 -0.37 0.97 16 28 H 0.13 2.23 6.40 -51.93 -0.33 1.90 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.10 1.64 7.67 -51.93 -0.40 1.24 16 33 H 0.06 0.96 7.73 -51.93 -0.40 0.56 16 34 H 0.07 1.06 6.61 -51.93 -0.34 0.71 16 35 H 0.04 0.99 7.99 -51.93 -0.42 0.58 16 36 H 0.07 1.83 5.75 -51.93 -0.30 1.53 16 LS Contribution 285.79 15.07 4.31 4.31 Total: -1.00 -30.81 285.79 -7.88 -38.69 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.44 Total: 0.70 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -1.55 Total: 2.71 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.26 Total: -50.86 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.81 -7.88 -38.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121465424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.814 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds