Wall clock time and date at job start Sun Mar 29 2020 22:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00003 * 2 1 4 4 H 1.48504 * 109.46993 * 85.24921 * 3 2 1 5 5 H 1.48501 * 109.47204 * 325.25298 * 3 2 1 6 6 H 1.48492 * 109.47289 * 205.25204 * 3 2 1 7 7 C 1.38808 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99724 * 196.15587 * 7 2 1 9 9 N 1.36932 * 120.00528 * 16.14901 * 7 2 1 10 10 C 1.43466 * 118.94388 * 205.18001 * 9 7 2 11 11 C 1.53241 * 108.26018 * 273.77957 * 10 9 7 12 12 C 1.47138 * 111.81031 * 281.67569 * 11 10 9 13 13 N 1.48214 * 110.34643 * 58.22849 * 12 11 10 14 14 C 1.34772 * 119.97145 * 102.50698 * 13 12 11 15 15 O 1.21282 * 120.00479 * 359.97438 * 14 13 12 16 16 C 1.50708 * 120.00032 * 179.97438 * 14 13 12 17 17 C 1.52998 * 117.49493 * 248.62673 * 16 14 13 18 18 C 1.52997 * 117.49990 * 180.02562 * 16 14 13 19 19 C 1.43626 * 120.05570 * 282.48745 * 13 12 11 20 20 C 1.48860 * 118.93927 * 25.44199 * 9 7 2 21 21 H 0.97006 * 119.99800 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.75903 * 33.23971 * 10 9 7 23 23 H 1.08997 * 109.76339 * 154.00945 * 10 9 7 24 24 H 1.09003 * 109.07884 * 161.04111 * 11 10 9 25 25 H 1.09001 * 108.90624 * 42.19617 * 11 10 9 26 26 H 1.09005 * 109.32693 * 297.96356 * 12 11 10 27 27 H 1.08999 * 109.32580 * 178.49435 * 12 11 10 28 28 H 1.08997 * 115.54920 * 34.32710 * 16 14 13 29 29 H 1.08994 * 117.50457 * 359.97438 * 17 16 14 30 30 H 1.09003 * 117.49759 * 145.02218 * 17 16 14 31 31 H 1.08995 * 117.49447 * 214.98184 * 18 16 14 32 32 H 1.08998 * 117.49644 * 359.97438 * 18 16 14 33 33 H 1.09004 * 108.87380 * 329.88514 * 19 13 12 34 34 H 1.09000 * 108.79055 * 211.39220 * 19 13 12 35 35 H 1.09002 * 109.47908 * 260.60579 * 20 9 7 36 36 H 1.09000 * 109.47804 * 20.63425 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3973 2.1044 1.3953 5 1 1.5015 2.6217 -0.7980 6 1 3.5943 1.4133 -0.5972 7 6 2.0102 -1.2021 -0.0005 8 1 3.0582 -1.2207 0.2597 9 7 1.3661 -2.3645 -0.3309 10 6 1.8755 -3.6077 0.1724 11 6 2.9574 -4.1084 -0.7904 12 6 2.3759 -4.7277 -1.9918 13 7 1.5030 -3.7608 -2.6989 14 6 1.9467 -3.1410 -3.8103 15 8 3.0600 -3.3740 -4.2312 16 6 1.0595 -2.1581 -4.5301 17 6 0.5356 -2.5590 -5.9106 18 6 1.6206 -1.4881 -5.7859 19 6 0.1845 -3.4843 -2.2009 20 6 0.1634 -2.2981 -1.2055 21 1 -0.4850 0.8401 -0.0004 22 1 2.3102 -3.4549 1.1603 23 1 1.0694 -4.3388 0.2328 24 1 3.5785 -4.8429 -0.2777 25 1 3.5798 -3.2657 -1.0914 26 1 1.7880 -5.5981 -1.7003 27 1 3.1779 -5.0442 -2.6586 28 1 0.4017 -1.5655 -3.8944 29 1 0.8329 -3.5333 -6.2984 30 1 -0.4672 -2.2301 -6.1833 31 1 1.3319 -0.4545 -5.9765 32 1 2.6316 -1.7578 -6.0912 33 1 -0.1962 -4.3733 -1.6981 34 1 -0.4667 -3.2497 -3.0429 35 1 -0.7357 -2.3543 -0.5920 36 1 0.1679 -1.3590 -1.7589 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121465424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:46 Heat of formation + Delta-G solvation = 1.713651 kcal Electronic energy + Delta-G solvation = -18191.366310 eV Core-core repulsion = 15483.530840 eV Total energy + Delta-G solvation = -2707.835470 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.32529 -38.87276 -37.04173 -35.91316 -34.28050 -32.73780 -29.29675 -27.47475 -25.61680 -25.32565 -23.31756 -22.53459 -21.46155 -19.73247 -18.89743 -18.01924 -17.49300 -16.74165 -16.33985 -15.94682 -15.63394 -15.08114 -14.91202 -14.65643 -14.15561 -13.89229 -13.43979 -13.32108 -13.13622 -12.84715 -12.53644 -12.44145 -12.32855 -12.10328 -11.77022 -11.75969 -11.51659 -11.43949 -11.34169 -10.77300 -10.49353 -9.53459 -8.65096 -7.87080 -5.29106 1.39643 1.42983 1.51783 1.53376 2.17217 2.49741 2.93636 3.25881 3.57327 3.75378 3.84849 4.02823 4.07019 4.23653 4.29027 4.35747 4.50838 4.58041 4.70432 4.73325 4.83721 4.88397 4.93810 5.03154 5.05957 5.21811 5.23602 5.28724 5.48256 5.60133 5.70928 5.82886 6.39304 6.55540 7.17779 7.25360 7.95523 8.33138 9.17547 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.010756 C = 0.008609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.151759 B = 2602.619043 C = 3251.791682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.039 4.039 3 Si 0.949 3.051 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.260 4.260 8 H 0.049 0.951 9 N -0.606 5.606 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.125 3.875 13 N -0.584 5.584 14 C 0.540 3.460 15 O -0.597 6.597 16 C -0.213 4.213 17 C -0.121 4.121 18 C -0.155 4.155 19 C 0.093 3.907 20 C 0.171 3.829 21 H 0.250 0.750 22 H 0.035 0.965 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.023 0.977 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.132 0.868 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.024 0.976 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 -8.179 -7.833 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.235 4.235 3 Si 0.779 3.221 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.390 4.390 8 H 0.067 0.933 9 N -0.328 5.328 10 C 0.031 3.969 11 C -0.196 4.196 12 C 0.004 3.996 13 N -0.313 5.313 14 C 0.330 3.670 15 O -0.479 6.479 16 C -0.233 4.233 17 C -0.159 4.159 18 C -0.193 4.193 19 C -0.032 4.032 20 C 0.046 3.954 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.042 0.958 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.138 0.862 29 H 0.117 0.883 30 H 0.150 0.850 31 H 0.135 0.865 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.042 0.958 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.930 -8.220 -8.007 11.636 hybrid contribution 0.654 1.390 0.538 1.627 sum -1.276 -6.830 -7.469 10.201 Atomic orbital electron populations 1.70136 1.05827 1.25546 1.55819 1.25477 0.96010 1.00413 1.01597 0.85541 0.78053 0.81111 0.77443 1.21189 1.21289 1.21032 1.19295 0.92191 0.86810 1.40742 0.93338 1.43866 1.31695 1.02095 1.55145 1.20332 0.94684 0.87526 0.94323 1.21604 1.00125 0.99937 0.97931 1.20686 0.94598 0.91073 0.93240 1.47437 1.16642 1.42187 1.25011 1.20085 0.86294 0.80040 0.80565 1.90570 1.22309 1.66164 1.68870 1.22230 1.05060 1.03415 0.92643 1.23014 1.00072 0.99887 0.92876 1.22960 0.99442 0.99267 0.97603 1.22035 0.82951 0.99730 0.98518 1.21730 0.87894 0.95573 0.90248 0.94060 0.94678 0.92235 0.89446 0.95788 0.88306 0.91150 0.86191 0.88287 0.84953 0.86502 0.89322 0.89320 0.88906 0.95795 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.80 11.03 21.65 0.24 -52.56 16 2 C -0.04 -2.18 4.90 84.86 0.42 -1.77 16 3 Si 0.95 45.83 29.58 68.60 2.03 47.86 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 7 C -0.26 -14.41 9.26 84.03 0.78 -13.63 16 8 H 0.05 2.77 7.88 -2.91 -0.02 2.75 16 9 N -0.61 -29.29 2.55 -699.19 -1.78 -31.08 16 10 C 0.16 6.29 5.59 87.02 0.49 6.78 16 11 C -0.16 -5.55 5.63 28.85 0.16 -5.39 16 12 C 0.13 4.04 5.69 84.23 0.48 4.52 16 13 N -0.58 -20.78 2.46 -831.19 -2.04 -22.82 16 14 C 0.54 20.98 7.45 87.66 0.65 21.63 16 15 O -0.60 -26.77 15.69 -3.04 -0.05 -26.82 16 16 C -0.21 -6.88 4.76 -11.54 -0.05 -6.93 16 17 C -0.12 -2.82 10.23 30.58 0.31 -2.51 16 18 C -0.16 -4.37 10.04 30.58 0.31 -4.06 16 19 C 0.09 3.05 4.88 87.55 0.43 3.48 16 20 C 0.17 7.56 5.12 86.56 0.44 8.01 16 21 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 22 H 0.03 1.45 8.02 -2.39 -0.02 1.43 16 23 H 0.06 2.05 7.58 -2.39 -0.02 2.03 16 24 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.02 1.06 7.91 -2.39 -0.02 1.04 16 26 H 0.10 2.47 8.06 -2.38 -0.02 2.45 16 27 H 0.07 2.38 7.12 -2.39 -0.02 2.36 16 28 H 0.12 4.09 6.40 -2.39 -0.02 4.08 16 29 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.09 2.77 7.67 -2.39 -0.02 2.75 16 33 H 0.09 2.46 7.73 -2.38 -0.02 2.44 16 34 H 0.09 2.63 6.61 -2.39 -0.02 2.61 16 35 H 0.02 1.14 7.99 -2.39 -0.02 1.12 16 36 H 0.04 2.09 5.75 -2.39 -0.01 2.08 16 Total: -1.00 -68.00 285.79 3.87 -64.14 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 1.06 Total: 11.16 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 4.41 Total: 10.12 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -3.58 Total: -106.46 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -68.00 3.87 -64.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121465424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.851 kcal (2) G-P(sol) polarization free energy of solvation -68.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds