Wall clock time and date at job start Sun Mar 29 2020 21:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86796 * 119.99929 * 2 1 4 4 H 1.48502 * 109.46857 * 239.99701 * 3 2 1 5 5 H 1.48497 * 109.47373 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47206 * 119.99611 * 3 2 1 7 7 C 1.38948 * 119.99645 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99564 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00155 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99686 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00266 * 5.16332 * 10 9 7 12 12 C 1.50707 * 119.99727 * 185.16749 * 10 9 7 13 13 H 1.08996 * 109.47125 * 33.49133 * 12 10 9 14 14 C 1.53006 * 109.46776 * 273.48916 * 12 10 9 15 15 C 1.53004 * 117.49485 * 123.23878 * 14 12 10 16 16 C 1.53005 * 117.49531 * 54.58116 * 14 12 10 17 17 N 1.46897 * 109.46953 * 153.49689 * 12 10 9 18 18 C 1.47908 * 110.99868 * 294.99539 * 17 12 10 19 19 C 1.53995 * 107.22432 * 214.26052 * 18 17 12 20 20 C 1.54591 * 105.14250 * 1.12401 * 19 18 17 21 21 C 1.48810 * 111.18350 * 177.66371 * 17 12 10 22 22 H 0.96994 * 119.99897 * 0.02562 * 1 2 3 23 23 H 0.97003 * 120.00409 * 359.97438 * 9 7 2 24 24 H 1.08996 * 115.55101 * 268.90757 * 14 12 10 25 25 H 1.09000 * 117.49860 * 359.97438 * 15 14 12 26 26 H 1.08993 * 117.50031 * 145.02175 * 15 14 12 27 27 H 1.09004 * 117.49637 * 214.97075 * 16 14 12 28 28 H 1.08998 * 117.49988 * 359.97438 * 16 14 12 29 29 H 1.08991 * 109.91395 * 94.80399 * 18 17 12 30 30 H 1.09005 * 109.91287 * 333.71276 * 18 17 12 31 31 H 1.09005 * 110.30509 * 120.04359 * 19 18 17 32 32 H 1.09003 * 110.30600 * 242.20832 * 19 18 17 33 33 H 1.08993 * 110.72252 * 140.31517 * 20 19 18 34 34 H 1.08997 * 110.72493 * 263.59997 * 20 19 18 35 35 H 1.08999 * 110.52016 * 41.06699 * 21 17 12 36 36 H 1.09004 * 110.83850 * 278.08360 * 21 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2064 -3.5600 0.0951 12 6 1.2483 -4.8603 -0.1170 13 1 0.3713 -4.7194 -0.7487 14 6 0.8067 -5.3219 1.2733 15 6 -0.6873 -5.5668 1.4948 16 6 -0.0117 -4.3417 2.1162 17 7 2.1243 -5.8766 -0.7149 18 6 2.4757 -5.5209 -2.1069 19 6 2.5854 -6.8365 -2.8999 20 6 2.2476 -7.9505 -1.8827 21 6 1.4398 -7.1954 -0.7975 22 1 -0.4850 0.8400 -0.0004 23 1 0.3533 -2.3907 0.0005 24 1 1.5065 -5.9733 1.7967 25 1 -1.3555 -5.3986 0.6503 26 1 -0.9704 -6.3789 2.1643 27 1 0.1494 -4.3486 3.1942 28 1 -0.2352 -3.3679 1.6804 29 1 3.4301 -4.9950 -2.1261 30 1 1.6965 -4.8917 -2.5373 31 1 1.8687 -6.8440 -3.7212 32 1 3.5988 -6.9657 -3.2799 33 1 1.6383 -8.7254 -2.3477 34 1 3.1578 -8.3758 -1.4600 35 1 0.4028 -7.0688 -1.1082 36 1 1.4929 -7.7202 0.1564 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123835796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:24 Heat of formation + Delta-G solvation = -27.388676 kcal Electronic energy + Delta-G solvation = -17586.912401 eV Core-core repulsion = 14877.814959 eV Total energy + Delta-G solvation = -2709.097442 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07674 -39.01292 -37.73150 -35.97389 -33.26666 -32.78989 -29.78042 -28.30863 -26.36265 -23.33151 -22.74062 -22.27728 -21.26663 -20.72033 -19.72800 -18.01604 -17.31946 -16.79902 -16.53295 -15.98821 -15.65390 -15.39276 -14.84171 -14.47300 -14.41299 -13.61539 -13.43676 -13.28134 -13.01144 -12.95787 -12.51370 -12.34312 -12.20542 -12.15241 -12.10547 -12.01724 -11.53696 -11.41881 -11.33369 -11.19264 -10.16123 -10.02183 -9.31250 -8.48237 -5.97203 1.37183 1.38954 1.50124 1.99698 2.26237 2.74281 2.83133 3.16856 3.37794 3.72867 3.83953 3.95249 3.99544 4.01264 4.10563 4.20964 4.39212 4.41821 4.60117 4.66266 4.76964 4.78828 4.93897 4.98894 5.02624 5.09056 5.20348 5.23114 5.24982 5.34606 5.38296 5.87386 5.99291 6.11560 6.58531 7.10785 7.53257 8.09595 8.69090 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028014 B = 0.007281 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.277066 B = 3844.748663 C = 4493.011753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.569 5.569 10 C 0.451 3.549 11 O -0.618 6.618 12 C 0.113 3.887 13 H 0.052 0.948 14 C -0.149 4.149 15 C -0.140 4.140 16 C -0.192 4.192 17 N -0.510 5.510 18 C 0.035 3.965 19 C -0.122 4.122 20 C -0.114 4.114 21 C 0.036 3.964 22 H 0.278 0.722 23 H 0.393 0.607 24 H 0.113 0.887 25 H 0.100 0.900 26 H 0.125 0.875 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 -13.712 -2.009 14.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.210 4.210 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.207 5.207 10 C 0.238 3.762 11 O -0.503 6.503 12 C 0.001 3.999 13 H 0.070 0.930 14 C -0.168 4.168 15 C -0.177 4.177 16 C -0.230 4.230 17 N -0.235 5.235 18 C -0.093 4.093 19 C -0.160 4.160 20 C -0.152 4.152 21 C -0.091 4.091 22 H 0.088 0.912 23 H 0.227 0.773 24 H 0.131 0.869 25 H 0.118 0.882 26 H 0.144 0.856 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.634 -13.561 -1.642 13.912 hybrid contribution -0.603 1.514 -0.412 1.681 sum -3.237 -12.047 -2.054 12.642 Atomic orbital electron populations 1.69666 1.06797 1.29382 1.50220 1.26018 0.96548 1.02283 0.96188 0.85007 0.77818 0.76683 0.78939 1.19708 1.19223 1.19772 1.19625 0.92613 0.84063 1.50175 0.90548 1.41982 1.08956 1.04577 1.65144 1.20577 0.87965 0.85526 0.82084 1.90469 1.16169 1.87750 1.55927 1.21089 0.92853 0.89909 0.96051 0.92996 1.22013 0.95676 1.04346 0.94812 1.23192 0.92168 0.99120 1.03202 1.23047 1.05101 0.94991 0.99874 1.64513 1.38926 1.02306 1.17775 1.22787 0.99640 0.98531 0.88316 1.22385 1.02994 0.92562 0.98038 1.22482 1.00633 0.97058 0.94986 1.23388 0.96377 0.88628 1.00691 0.91232 0.77320 0.86893 0.88204 0.85637 0.87810 0.90704 0.93438 0.95576 0.89937 0.90455 0.88165 0.90746 0.92968 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 0.99 43.90 29.55 68.60 2.03 45.93 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.34 -19.72 9.68 84.04 0.81 -18.91 16 8 H 0.08 4.79 7.17 -2.91 -0.02 4.77 16 9 N -0.57 -30.68 4.75 -306.98 -1.46 -32.14 16 10 C 0.45 23.13 5.87 87.66 0.51 23.64 16 11 O -0.62 -36.80 15.80 -3.05 -0.05 -36.85 16 12 C 0.11 4.41 1.85 44.17 0.08 4.49 16 13 H 0.05 1.94 7.69 -2.39 -0.02 1.92 16 14 C -0.15 -4.91 4.38 -10.79 -0.05 -4.96 16 15 C -0.14 -3.47 10.18 30.62 0.31 -3.16 16 16 C -0.19 -6.34 9.77 30.62 0.30 -6.04 16 17 N -0.51 -18.21 4.79 -861.44 -4.13 -22.33 16 18 C 0.04 1.25 5.82 86.45 0.50 1.75 16 19 C -0.12 -2.93 6.93 31.47 0.22 -2.71 16 20 C -0.11 -2.32 7.06 31.80 0.22 -2.10 16 21 C 0.04 0.90 5.74 86.60 0.50 1.39 16 22 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 23 H 0.39 20.33 6.79 -92.71 -0.63 19.70 16 24 H 0.11 3.69 8.13 -2.39 -0.02 3.67 16 25 H 0.10 2.34 8.03 -2.39 -0.02 2.32 16 26 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 28 H 0.07 2.94 6.38 -2.39 -0.02 2.92 16 29 H 0.05 1.99 7.95 -2.39 -0.02 1.97 16 30 H 0.03 0.96 7.65 -2.38 -0.02 0.94 16 31 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.20 8.02 -2.39 -0.02 1.18 16 36 H 0.09 2.08 7.96 -2.38 -0.02 2.06 16 Total: -1.00 -69.44 294.98 1.00 -68.45 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.44 Total: 33.93 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 3.88 Total: -6.70 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -5.30 Total: -104.76 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -0.05 Total: -36.85 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -69.44 1.00 -68.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123835796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.059 kcal (2) G-P(sol) polarization free energy of solvation -69.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds