Wall clock time and date at job start Sun Mar 29 2020 22:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46757 * 60.00769 * 9 7 5 11 11 H 1.48495 * 109.46824 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47105 * 300.00477 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.50697 * 109.47066 * 180.02562 * 15 14 13 17 17 C 1.41382 * 126.80097 * 94.71291 * 16 15 14 18 18 C 1.35454 * 103.98569 * 179.89205 * 17 16 15 19 19 O 1.34042 * 106.44391 * 0.36301 * 18 17 16 20 20 N 1.20916 * 111.56818 * 359.75205 * 19 18 17 21 21 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 22 22 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 23 23 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 26 26 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 27 27 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 28 28 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 29 29 H 0.97002 * 120.00555 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 31 31 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 32 32 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 33 33 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 34 34 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 35 35 H 1.08004 * 128.00537 * 0.02562 * 17 16 15 36 36 H 1.08002 * 126.77602 * 180.10108 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2491 0.3991 -5.2572 10 1 1.7443 1.7991 -5.2568 11 1 1.7441 -0.3011 -6.4696 12 1 -0.2358 0.3992 -5.2577 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.5001 0.0422 4.8771 17 6 0.3293 -0.2566 5.6111 18 6 0.3056 0.6830 6.5865 19 8 1.3863 1.4532 6.3977 20 7 2.0353 1.0832 5.4470 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9562 -0.8901 26 1 1.6767 1.9563 0.8899 27 1 3.1300 -0.7218 -1.2489 28 1 1.6767 -1.7491 -1.2491 29 1 2.8618 -1.8826 -4.7335 30 1 3.1300 -0.7209 1.2495 31 1 1.6766 -1.7489 1.2494 32 1 1.8198 0.9437 2.4401 33 1 1.6586 -1.7220 3.6874 34 1 3.1116 -0.6939 3.6870 35 1 -0.3807 -1.0514 5.4359 36 1 -0.4394 0.7927 7.3607 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128936105.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:44 Heat of formation + Delta-G solvation = 45.777606 kcal Electronic energy + Delta-G solvation = -16739.510943 eV Core-core repulsion = 14033.586230 eV Total energy + Delta-G solvation = -2705.924714 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.01062 -37.79029 -35.38825 -33.22865 -32.08047 -31.59108 -27.49087 -26.58021 -26.32004 -24.45689 -23.20713 -22.21529 -21.00569 -18.23624 -17.63163 -17.57262 -16.23528 -15.47346 -15.25746 -14.78544 -14.19168 -13.86632 -13.56163 -13.05614 -12.71625 -12.53628 -12.27358 -11.97082 -11.70210 -11.37125 -10.95796 -10.86374 -10.78947 -10.48404 -10.35603 -10.21589 -10.13243 -9.76639 -9.68101 -9.02169 -8.84511 -8.30632 -8.18683 -5.95348 -3.95563 1.40686 2.13681 3.16950 3.35646 3.40156 3.42507 4.05441 4.43206 4.49405 4.66063 5.06399 5.20915 5.28402 5.40383 5.54479 5.61898 5.70622 5.79619 5.93941 5.97944 6.22919 6.31514 6.50285 6.66029 6.78149 6.83209 7.15384 7.20597 7.25501 7.34492 7.57469 7.70637 7.85567 8.04680 8.18085 8.49022 9.09449 9.67187 11.16308 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.060419 B = 0.004208 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.319395 B = 6652.525852 C = 6750.142240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.130 4.130 4 C 0.034 3.966 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.069 3.931 14 N -0.681 5.681 15 C 0.133 3.867 16 C 0.026 3.974 17 C -0.216 4.216 18 C -0.069 4.069 19 O 0.097 5.903 20 N -0.365 5.365 21 H 0.041 0.959 22 H 0.055 0.945 23 H 0.040 0.960 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.032 0.968 27 H 0.013 0.987 28 H 0.016 0.984 29 H 0.259 0.741 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.342 0.658 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.172 0.828 36 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 2.228 18.718 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.187 4.187 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.059 4.059 14 N -0.314 5.314 15 C 0.003 3.997 16 C -0.133 4.133 17 C -0.238 4.238 18 C -0.150 4.150 19 O 0.030 5.970 20 N -0.069 5.069 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.189 0.811 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -3.700 2.511 18.339 18.876 hybrid contribution -0.101 -0.013 -0.902 0.908 sum -3.802 2.498 17.437 18.021 Atomic orbital electron populations 1.21602 0.94953 1.00599 1.00184 1.20635 0.95911 0.95027 0.94271 1.21779 0.99783 0.96735 1.00436 1.19120 0.95930 0.95198 0.90089 1.21199 1.30843 1.11954 0.90615 0.92343 1.25010 0.95378 0.95115 0.99033 1.69954 1.37232 1.23190 1.23409 0.86722 0.79199 0.79789 0.82675 1.20349 1.21433 1.20302 1.22163 0.96591 0.98200 0.88939 1.60625 1.63529 1.06733 1.00500 1.20223 0.97279 0.97063 0.85099 1.23657 0.94741 0.95147 0.99782 1.22750 1.00199 1.03753 0.97108 1.25998 0.93228 0.93348 1.02439 1.84827 1.29135 1.46152 1.36872 1.73850 1.18384 1.14583 1.00121 0.93977 0.92630 0.94101 0.94022 0.91614 0.94897 0.96868 0.96615 0.93101 0.95537 0.91216 0.83847 0.88883 0.93701 0.81098 0.76873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 2 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 3 C -0.13 -2.49 7.89 37.16 0.29 -2.20 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.95 7.65 -34.44 -0.26 -14.22 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.07 1.20 4.65 -3.82 -0.02 1.18 16 14 N -0.68 -10.30 5.70 -115.05 -0.66 -10.96 16 15 C 0.13 1.73 6.27 -4.97 -0.03 1.70 16 16 C 0.03 0.33 6.84 -82.10 -0.56 -0.23 16 17 C -0.22 -2.13 11.12 -39.38 -0.44 -2.57 16 18 C -0.07 -0.56 12.30 29.74 0.37 -0.19 16 19 O 0.10 1.10 11.20 17.17 0.19 1.30 16 20 N -0.37 -5.01 12.07 33.42 0.40 -4.60 16 21 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 22 H 0.05 1.16 6.62 -51.93 -0.34 0.81 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 1.35 6.62 -51.93 -0.34 1.01 16 26 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.34 5.35 6.76 -39.29 -0.27 5.08 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.21 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 297.41 15.07 4.48 4.48 Total: -1.00 -30.82 297.41 -5.87 -36.69 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.35 Total: 0.16 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -0.66 Total: -17.53 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.48 Total: -41.74 kcal Atomic # 8 Polarization: 1.10 SS G_CDS: 0.19 Total: 1.30 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.82 -5.87 -36.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128936105.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.463 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds