Wall clock time and date at job start Sun Mar 29 2020 21:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00230 * 2 1 4 4 H 1.48496 * 109.47273 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47048 * 300.00167 * 3 2 1 6 6 H 1.48503 * 109.47081 * 59.99697 * 3 2 1 7 7 C 1.37879 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99811 * 179.97438 * 7 2 1 9 9 C 1.50689 * 120.00255 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47533 * 180.02562 * 9 7 2 11 11 C 1.46700 * 110.99890 * 66.04162 * 10 9 7 12 12 C 1.53286 * 110.05482 * 184.81768 * 11 10 9 13 13 C 1.52726 * 108.57812 * 301.78660 * 12 11 10 14 14 H 1.08993 * 108.80286 * 300.43096 * 13 12 11 15 15 N 1.45321 * 112.12921 * 180.02562 * 13 12 11 16 16 C 1.32803 * 123.55898 * 213.90791 * 15 13 12 17 17 O 1.21279 * 118.28175 * 185.05109 * 16 15 13 18 18 C 1.50054 * 123.73541 * 5.87700 * 16 15 13 19 19 C 1.53218 * 110.63881 * 343.49906 * 18 16 15 20 20 C 1.52850 * 108.10413 * 46.17039 * 19 18 16 21 21 H 1.09005 * 109.30320 * 51.66349 * 20 19 18 22 22 C 1.46829 * 110.80093 * 191.22571 * 10 9 7 23 23 H 0.97005 * 120.00178 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47533 * 59.99905 * 9 7 2 25 25 H 1.09005 * 109.47523 * 299.99919 * 9 7 2 26 26 H 1.09002 * 109.35382 * 64.67141 * 11 10 9 27 27 H 1.09004 * 109.35268 * 304.95972 * 11 10 9 28 28 H 1.08991 * 109.62319 * 61.51768 * 12 11 10 29 29 H 1.09004 * 109.61778 * 181.88541 * 12 11 10 30 30 H 0.96994 * 118.56056 * 34.81110 * 15 13 12 31 31 H 1.09003 * 109.24293 * 223.20264 * 18 16 15 32 32 H 1.08996 * 109.24833 * 103.80198 * 18 16 15 33 33 H 1.09001 * 109.73718 * 286.51451 * 19 18 16 34 34 H 1.09003 * 109.73265 * 165.82691 * 19 18 16 35 35 H 1.08993 * 109.63458 * 54.61429 * 22 10 9 36 36 H 1.09004 * 109.74158 * 294.19733 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.9698 -3.6540 1.2510 12 6 4.0394 -4.7498 1.1805 13 6 3.3497 -6.0867 0.9168 14 1 2.6490 -6.2864 1.7274 15 7 4.2977 -7.1851 0.8357 16 6 4.1396 -8.2337 0.0363 17 8 4.9417 -9.1403 0.1122 18 6 3.0336 -8.3548 -0.9706 19 6 1.9200 -7.3452 -0.6736 20 6 2.5694 -5.9896 -0.3963 21 1 3.2547 -5.7455 -1.2081 22 6 1.5209 -4.8869 -0.2677 23 1 -0.4851 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6246 -2.5571 0.8897 26 1 2.2941 -3.8615 2.0808 27 1 3.4512 -2.6890 1.4099 28 1 4.7350 -4.5307 0.3705 29 1 4.5806 -4.7943 2.1257 30 1 5.0839 -7.1620 1.4033 31 1 2.6230 -9.3638 -0.9336 32 1 3.4328 -8.1665 -1.9672 33 1 1.3540 -7.6679 0.2002 34 1 1.2559 -7.2661 -1.5343 35 1 0.9555 -4.8103 -1.1964 36 1 0.8440 -5.1204 0.5541 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160282207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:03 Heat of formation + Delta-G solvation = -48.171881 kcal Electronic energy + Delta-G solvation = -17404.884011 eV Core-core repulsion = 14694.885341 eV Total energy + Delta-G solvation = -2709.998669 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.65669 -38.30834 -35.52435 -33.65507 -32.80312 -30.88033 -29.68388 -26.82458 -24.30762 -23.66677 -22.43666 -21.46924 -19.73369 -19.15801 -17.01706 -16.43850 -16.22127 -15.31708 -14.97540 -14.60700 -14.28034 -14.11433 -13.68461 -13.56968 -13.07839 -12.89757 -12.38472 -11.97807 -11.65354 -11.39018 -11.28001 -11.06441 -10.83308 -10.75204 -10.60731 -10.43171 -10.30719 -9.82586 -9.67448 -9.23738 -9.02440 -8.49466 -7.32760 -6.08473 -4.10137 2.65030 3.27233 3.31093 3.35243 3.39417 4.34424 4.47319 4.57261 4.73658 4.74389 4.93042 5.17301 5.27266 5.29210 5.40564 5.57088 5.70801 5.73234 5.73475 5.84420 5.90216 5.96870 6.06730 6.23890 6.37305 6.54832 6.57739 6.78384 7.21778 7.25970 7.36664 7.73715 8.02198 8.10908 8.21840 8.46950 8.97725 9.54716 11.02342 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051437 B = 0.005326 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.224543 B = 5256.451447 C = 5583.635826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.541 5.541 11 C 0.070 3.930 12 C -0.124 4.124 13 C 0.140 3.860 14 H 0.067 0.933 15 N -0.708 5.708 16 C 0.521 3.479 17 O -0.572 6.572 18 C -0.134 4.134 19 C -0.119 4.119 20 C -0.098 4.098 21 H 0.087 0.913 22 C 0.067 3.933 23 H 0.261 0.739 24 H 0.031 0.969 25 H -0.008 1.008 26 H 0.022 0.978 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.396 0.604 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.733 -11.893 0.895 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.266 5.266 11 C -0.059 4.059 12 C -0.163 4.163 13 C 0.035 3.965 14 H 0.085 0.915 15 N -0.358 5.358 16 C 0.308 3.692 17 O -0.453 6.453 18 C -0.174 4.174 19 C -0.157 4.157 20 C -0.117 4.117 21 H 0.105 0.895 22 C -0.062 4.062 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.010 0.990 26 H 0.040 0.960 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.231 0.769 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.110 -12.152 0.412 12.835 hybrid contribution 0.007 0.956 0.900 1.313 sum 4.117 -11.196 1.311 12.000 Atomic orbital electron populations 1.69960 1.06083 1.26743 1.50980 1.24985 0.94849 0.99342 0.95382 0.86459 0.80082 0.83443 0.77543 1.19650 1.20997 1.21112 1.21193 0.93532 0.89899 1.50098 0.91776 1.19710 0.89951 0.87197 0.96224 1.61782 1.28515 1.02837 1.33417 1.21872 0.94647 0.98548 0.90804 1.21931 0.99178 0.93130 1.02031 1.20998 0.90616 0.86493 0.98379 0.91503 1.45412 1.26728 1.21137 1.42533 1.20025 0.86601 0.81207 0.81342 1.90737 1.45564 1.38516 1.70453 1.21625 0.94919 1.01885 0.98960 1.21649 0.97281 0.93905 1.02845 1.21475 0.98338 0.94632 0.97250 0.89479 1.21886 0.94012 0.89569 1.00746 0.92932 0.95048 0.99046 0.95976 0.89151 0.90537 0.91531 0.76888 0.88466 0.88201 0.91318 0.90124 0.90576 0.95627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -13.65 8.44 -34.44 -0.29 -13.94 16 8 H 0.06 1.70 7.13 -52.48 -0.37 1.33 16 9 C 0.19 4.77 4.72 -4.98 -0.02 4.74 16 10 N -0.54 -10.62 4.60 -236.31 -1.09 -11.71 16 11 C 0.07 1.22 5.29 -3.79 -0.02 1.20 16 12 C -0.12 -1.67 5.79 -26.72 -0.15 -1.82 16 13 C 0.14 1.74 2.77 -68.68 -0.19 1.55 16 14 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 15 N -0.71 -8.62 5.20 -55.38 -0.29 -8.91 16 16 C 0.52 7.04 7.69 -12.17 -0.09 6.95 16 17 O -0.57 -9.82 17.77 5.56 0.10 -9.72 16 18 C -0.13 -1.42 5.98 -28.08 -0.17 -1.59 16 19 C -0.12 -1.23 5.46 -26.70 -0.15 -1.37 16 20 C -0.10 -1.25 2.05 -90.82 -0.19 -1.44 16 21 H 0.09 1.21 8.10 -51.93 -0.42 0.79 16 22 C 0.07 1.06 4.89 -4.01 -0.02 1.05 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.03 0.83 7.96 -51.93 -0.41 0.41 16 25 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 1.73 6.72 -51.93 -0.35 1.39 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.40 4.46 8.69 -40.82 -0.35 4.11 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.21 8.01 -51.93 -0.42 0.79 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 286.57 15.07 4.32 4.32 Total: -1.00 -30.49 286.57 -8.32 -38.81 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.69 Total: -0.35 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -1.39 Total: -3.23 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.64 Total: -45.80 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.10 Total: -9.72 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.49 -8.32 -38.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160282207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.359 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds