Wall clock time and date at job start Sun Mar 29 2020 21:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00230 * 2 1 4 4 H 1.48496 * 109.47273 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47048 * 300.00167 * 3 2 1 6 6 H 1.48503 * 109.47081 * 59.99697 * 3 2 1 7 7 C 1.37879 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99811 * 179.97438 * 7 2 1 9 9 C 1.50689 * 120.00255 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47533 * 180.02562 * 9 7 2 11 11 C 1.46700 * 110.99890 * 66.04162 * 10 9 7 12 12 C 1.53286 * 110.05482 * 184.81768 * 11 10 9 13 13 C 1.52726 * 108.57812 * 301.78660 * 12 11 10 14 14 H 1.08993 * 108.80286 * 300.43096 * 13 12 11 15 15 N 1.45321 * 112.12921 * 180.02562 * 13 12 11 16 16 C 1.32803 * 123.55898 * 213.90791 * 15 13 12 17 17 O 1.21279 * 118.28175 * 185.05109 * 16 15 13 18 18 C 1.50054 * 123.73541 * 5.87700 * 16 15 13 19 19 C 1.53218 * 110.63881 * 343.49906 * 18 16 15 20 20 C 1.52850 * 108.10413 * 46.17039 * 19 18 16 21 21 H 1.09005 * 109.30320 * 51.66349 * 20 19 18 22 22 C 1.46829 * 110.80093 * 191.22571 * 10 9 7 23 23 H 0.97005 * 120.00178 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47533 * 59.99905 * 9 7 2 25 25 H 1.09005 * 109.47523 * 299.99919 * 9 7 2 26 26 H 1.09002 * 109.35382 * 64.67141 * 11 10 9 27 27 H 1.09004 * 109.35268 * 304.95972 * 11 10 9 28 28 H 1.08991 * 109.62319 * 61.51768 * 12 11 10 29 29 H 1.09004 * 109.61778 * 181.88541 * 12 11 10 30 30 H 0.96994 * 118.56056 * 34.81110 * 15 13 12 31 31 H 1.09003 * 109.24293 * 223.20264 * 18 16 15 32 32 H 1.08996 * 109.24833 * 103.80198 * 18 16 15 33 33 H 1.09001 * 109.73718 * 286.51451 * 19 18 16 34 34 H 1.09003 * 109.73265 * 165.82691 * 19 18 16 35 35 H 1.08993 * 109.63458 * 54.61429 * 22 10 9 36 36 H 1.09004 * 109.74158 * 294.19733 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.9698 -3.6540 1.2510 12 6 4.0394 -4.7498 1.1805 13 6 3.3497 -6.0867 0.9168 14 1 2.6490 -6.2864 1.7274 15 7 4.2977 -7.1851 0.8357 16 6 4.1396 -8.2337 0.0363 17 8 4.9417 -9.1403 0.1122 18 6 3.0336 -8.3548 -0.9706 19 6 1.9200 -7.3452 -0.6736 20 6 2.5694 -5.9896 -0.3963 21 1 3.2547 -5.7455 -1.2081 22 6 1.5209 -4.8869 -0.2677 23 1 -0.4851 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6246 -2.5571 0.8897 26 1 2.2941 -3.8615 2.0808 27 1 3.4512 -2.6890 1.4099 28 1 4.7350 -4.5307 0.3705 29 1 4.5806 -4.7943 2.1257 30 1 5.0839 -7.1620 1.4033 31 1 2.6230 -9.3638 -0.9336 32 1 3.4328 -8.1665 -1.9672 33 1 1.3540 -7.6679 0.2002 34 1 1.2559 -7.2661 -1.5343 35 1 0.9555 -4.8103 -1.1964 36 1 0.8440 -5.1204 0.5541 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160282207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:03 Heat of formation + Delta-G solvation = -70.226604 kcal Electronic energy + Delta-G solvation = -17405.840375 eV Core-core repulsion = 14694.885341 eV Total energy + Delta-G solvation = -2710.955034 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.73574 -39.58887 -36.91028 -34.74366 -34.63313 -32.30950 -30.85290 -28.64395 -25.52219 -25.10160 -23.61636 -22.97396 -21.07282 -20.18406 -18.45337 -18.07145 -17.41639 -16.66476 -16.33468 -16.01611 -15.59508 -15.36321 -15.08171 -14.89814 -14.29851 -14.07761 -13.95482 -13.45455 -13.07119 -12.81534 -12.74562 -12.43778 -12.39866 -12.17509 -12.07079 -11.75639 -11.65787 -11.38849 -11.13256 -10.72945 -10.59587 -10.09858 -8.96236 -8.18713 -6.28106 1.42195 1.43765 1.56259 1.61492 2.29921 2.41739 3.13817 3.21901 3.53192 3.65082 3.73302 3.85544 4.16560 4.22841 4.41114 4.42187 4.55791 4.63795 4.73207 4.79251 4.83490 4.93296 4.97403 5.07245 5.16008 5.18638 5.26426 5.35003 5.43551 5.68159 5.80613 6.08772 6.33227 6.37764 6.69082 6.88941 7.19623 7.41930 8.92295 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051437 B = 0.005326 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.224543 B = 5256.451447 C = 5583.635826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.549 5.549 11 C 0.070 3.930 12 C -0.112 4.112 13 C 0.147 3.853 14 H 0.075 0.925 15 N -0.700 5.700 16 C 0.517 3.483 17 O -0.612 6.612 18 C -0.128 4.128 19 C -0.110 4.110 20 C -0.090 4.090 21 H 0.080 0.920 22 C 0.067 3.933 23 H 0.264 0.736 24 H 0.006 0.994 25 H -0.036 1.036 26 H 0.020 0.980 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.401 0.599 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 -12.590 0.904 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.559 4.559 8 H 0.081 0.919 9 C 0.082 3.918 10 N -0.274 5.274 11 C -0.058 4.058 12 C -0.151 4.151 13 C 0.042 3.958 14 H 0.093 0.907 15 N -0.348 5.348 16 C 0.306 3.694 17 O -0.495 6.495 18 C -0.168 4.168 19 C -0.148 4.148 20 C -0.110 4.110 21 H 0.098 0.902 22 C -0.062 4.062 23 H 0.072 0.928 24 H 0.024 0.976 25 H -0.018 1.018 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.237 0.763 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.961 -12.854 0.429 13.785 hybrid contribution -0.271 1.161 0.911 1.501 sum 4.690 -11.693 1.340 12.670 Atomic orbital electron populations 1.70078 1.07677 1.27760 1.52014 1.25858 0.95664 1.03033 0.94950 0.85390 0.79054 0.78907 0.77598 1.18728 1.20638 1.20561 1.21513 0.93647 0.91108 1.49646 0.91851 1.19346 0.90039 0.88784 0.93631 1.61688 1.27664 1.03212 1.34806 1.21855 0.95189 0.99090 0.89703 1.21801 0.97768 0.92118 1.03366 1.20887 0.90537 0.85976 0.98417 0.90671 1.45320 1.26717 1.20573 1.42236 1.20543 0.86777 0.80635 0.81445 1.90727 1.47234 1.39893 1.71668 1.21641 0.93892 1.02788 0.98458 1.21608 0.97293 0.91881 1.04007 1.21375 0.97401 0.94927 0.97275 0.90191 1.21946 0.94924 0.88712 1.00607 0.92755 0.97566 1.01841 0.96129 0.91411 0.91011 0.88899 0.76326 0.86857 0.87067 0.90471 0.88497 0.90881 0.95368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.91 13.29 21.45 0.28 -54.62 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.52 -28.41 8.44 25.60 0.22 -28.20 16 8 H 0.06 3.39 7.13 -2.91 -0.02 3.37 16 9 C 0.21 10.55 4.72 85.55 0.40 10.96 16 10 N -0.55 -21.68 4.60 -901.55 -4.15 -25.82 16 11 C 0.07 2.42 5.29 86.44 0.46 2.88 16 12 C -0.11 -2.80 5.79 30.60 0.18 -2.62 16 13 C 0.15 3.30 2.77 45.14 0.13 3.42 16 14 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 15 N -0.70 -15.35 5.20 -448.59 -2.33 -17.68 16 16 C 0.52 12.81 7.69 87.76 0.67 13.49 16 17 O -0.61 -20.05 17.77 -3.03 -0.05 -20.10 16 18 C -0.13 -2.33 5.98 29.72 0.18 -2.15 16 19 C -0.11 -1.94 5.46 30.62 0.17 -1.77 16 20 C -0.09 -2.14 2.05 -10.92 -0.02 -2.16 16 21 H 0.08 2.05 8.10 -2.38 -0.02 2.03 16 22 C 0.07 2.07 4.89 86.22 0.42 2.49 16 23 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 24 H 0.01 0.34 7.96 -2.39 -0.02 0.32 16 25 H -0.04 -1.99 8.12 -2.38 -0.02 -2.01 16 26 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 2.62 6.72 -2.39 -0.02 2.60 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.40 8.12 8.69 -92.71 -0.81 7.31 16 31 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 2.29 8.01 -2.39 -0.02 2.28 16 36 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -66.26 286.57 -0.71 -66.97 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.26 Total: 9.11 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 3.26 Total: -3.04 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -6.20 Total: -98.13 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.05 Total: -20.10 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -66.26 -0.71 -66.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160282207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.257 kcal (2) G-P(sol) polarization free energy of solvation -66.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds