Wall clock time and date at job start Sun Mar 29 2020 21:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99947 * 2 1 4 4 H 1.48496 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47237 * 300.00162 * 3 2 1 6 6 H 1.48497 * 109.47237 * 60.00304 * 3 2 1 7 7 C 1.37877 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00100 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46686 * 180.02562 * 9 7 2 11 11 C 1.46908 * 111.00195 * 293.95291 * 10 9 7 12 12 C 1.53016 * 109.24286 * 173.46883 * 11 10 9 13 13 C 1.52711 * 109.66238 * 58.89865 * 12 11 10 14 14 H 1.08998 * 107.75816 * 185.65231 * 13 12 11 15 15 N 1.45469 * 110.70988 * 67.00590 * 13 12 11 16 16 C 1.33478 * 123.89645 * 217.97344 * 15 13 12 17 17 O 1.21273 * 118.29017 * 182.35029 * 16 15 13 18 18 C 1.50260 * 123.43765 * 2.32140 * 16 15 13 19 19 C 1.53058 * 109.99984 * 342.45111 * 18 16 15 20 20 C 1.52770 * 110.20156 * 304.00480 * 13 12 11 21 21 H 1.09003 * 109.72949 * 293.75219 * 20 13 12 22 22 C 1.46788 * 110.99444 * 170.04540 * 10 9 7 23 23 H 0.96999 * 119.99677 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46777 * 60.00627 * 9 7 2 25 25 H 1.08996 * 109.46995 * 300.00209 * 9 7 2 26 26 H 1.08997 * 109.50723 * 53.54220 * 11 10 9 27 27 H 1.08998 * 109.51261 * 293.39657 * 11 10 9 28 28 H 1.09006 * 109.44341 * 298.84330 * 12 11 10 29 29 H 1.08996 * 109.40999 * 178.93827 * 12 11 10 30 30 H 0.96996 * 118.05498 * 37.94661 * 15 13 12 31 31 H 1.08997 * 109.43300 * 222.26663 * 18 16 15 32 32 H 1.09004 * 109.35929 * 102.58926 * 18 16 15 33 33 H 1.09002 * 109.68617 * 289.13270 * 19 18 16 34 34 H 1.09002 * 109.68237 * 168.60758 * 19 18 16 35 35 H 1.09004 * 109.41510 * 66.04094 * 22 10 9 36 36 H 1.09001 * 109.41683 * 306.23536 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9710 -3.6540 -1.2539 12 6 4.0600 -4.7237 -1.1473 13 6 3.4200 -6.0829 -0.8730 14 1 4.2229 -6.8000 -0.7026 15 7 2.6386 -6.5240 -2.0179 16 6 1.4746 -7.1699 -1.9204 17 8 0.9293 -7.5293 -2.9423 18 6 0.8046 -7.4758 -0.6107 19 6 1.8120 -7.3496 0.5347 20 6 2.5532 -6.0139 0.3831 21 1 3.1831 -5.8414 1.2558 22 6 1.5215 -4.8926 0.2364 23 1 -0.4849 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 3.4317 -2.6818 -1.4289 27 1 2.3034 -3.8955 -2.0809 28 1 4.7383 -4.4711 -0.3323 29 1 4.6175 -4.7675 -2.0829 30 1 2.9837 -6.3374 -2.9050 31 1 0.4091 -8.4912 -0.6341 32 1 -0.0142 -6.7742 -0.4511 33 1 2.5253 -8.1726 0.4888 34 1 1.2869 -7.3717 1.4896 35 1 0.8640 -5.1128 -0.6046 36 1 0.9299 -4.8228 1.1492 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160282462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:07 Heat of formation + Delta-G solvation = -44.145609 kcal Electronic energy + Delta-G solvation = -17811.426960 eV Core-core repulsion = 15101.602883 eV Total energy + Delta-G solvation = -2709.824077 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.79353 -38.02586 -35.27824 -33.79347 -32.64404 -30.85625 -29.11296 -27.08085 -24.56504 -23.87357 -22.27232 -21.48665 -20.17803 -18.13917 -16.73278 -16.29118 -15.86951 -15.65106 -15.39733 -14.49036 -14.26173 -14.05038 -13.54192 -13.39407 -12.92915 -12.91248 -12.44744 -12.10517 -11.73358 -11.35682 -11.15739 -10.98685 -10.76955 -10.69201 -10.58182 -10.31893 -10.28586 -9.78491 -9.58459 -9.22571 -8.87314 -8.46981 -7.28485 -6.05769 -4.07524 2.76170 3.28721 3.36272 3.40194 3.41169 4.38434 4.58900 4.64691 4.68450 4.80552 4.96390 5.24820 5.26175 5.30105 5.46905 5.56135 5.64961 5.75062 5.79599 5.94084 5.97310 6.01054 6.09878 6.27260 6.34100 6.55711 6.63413 6.89317 7.24733 7.31001 7.46679 7.76165 8.04220 8.15009 8.32559 8.50171 9.00249 9.56993 11.05145 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038149 B = 0.006267 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.789757 B = 4466.568609 C = 4584.284064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.533 5.533 11 C 0.063 3.937 12 C -0.128 4.128 13 C 0.145 3.855 14 H 0.065 0.935 15 N -0.709 5.709 16 C 0.523 3.477 17 O -0.568 6.568 18 C -0.138 4.138 19 C -0.118 4.118 20 C -0.094 4.094 21 H 0.098 0.902 22 C 0.056 3.944 23 H 0.261 0.739 24 H -0.010 1.010 25 H 0.030 0.970 26 H 0.086 0.914 27 H 0.020 0.980 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.396 0.604 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.025 0.975 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.580 -13.169 0.998 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.258 5.258 11 C -0.065 4.065 12 C -0.166 4.166 13 C 0.040 3.960 14 H 0.083 0.917 15 N -0.360 5.360 16 C 0.310 3.690 17 O -0.448 6.448 18 C -0.178 4.178 19 C -0.156 4.156 20 C -0.113 4.113 21 H 0.117 0.883 22 C -0.072 4.072 23 H 0.071 0.929 24 H 0.007 0.993 25 H 0.048 0.952 26 H 0.104 0.896 27 H 0.039 0.961 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.231 0.769 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.043 0.957 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.386 -13.194 1.098 14.699 hybrid contribution -0.068 1.018 -0.945 1.391 sum 6.317 -12.176 0.153 13.718 Atomic orbital electron populations 1.69973 1.06083 1.26708 1.50966 1.25004 0.94866 0.99367 0.95432 0.86446 0.80033 0.83436 0.77529 1.19659 1.21131 1.20989 1.21182 0.93496 0.89881 1.50062 0.91776 1.19706 0.90046 0.87329 0.96072 1.62121 1.27948 1.02463 1.33236 1.21928 0.94806 0.98838 0.90971 1.21925 0.98784 0.93659 1.02237 1.20800 0.92883 0.96397 0.85943 0.91684 1.45543 1.22423 1.57799 1.10241 1.20197 0.80457 0.76693 0.91637 1.90729 1.63099 1.53676 1.37314 1.21705 0.99767 1.04346 0.91978 1.21735 0.98046 0.97377 0.98470 1.21519 0.97609 0.94661 0.97511 0.88332 1.22124 0.94585 0.90125 1.00412 0.92948 0.99257 0.95176 0.89585 0.96136 0.89597 0.91719 0.76862 0.88606 0.87884 0.91288 0.90281 0.95741 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -13.97 8.42 -34.44 -0.29 -14.26 16 8 H 0.06 1.73 7.14 -52.49 -0.37 1.36 16 9 C 0.19 4.95 4.72 -4.97 -0.02 4.92 16 10 N -0.53 -10.85 4.65 -236.10 -1.10 -11.94 16 11 C 0.06 1.15 5.21 -3.81 -0.02 1.13 16 12 C -0.13 -1.70 5.70 -26.87 -0.15 -1.85 16 13 C 0.14 1.74 2.99 -68.75 -0.21 1.54 16 14 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 15 N -0.71 -9.46 4.71 -55.20 -0.26 -9.72 16 16 C 0.52 7.94 6.90 -11.78 -0.08 7.86 16 17 O -0.57 -10.82 17.79 5.56 0.10 -10.72 16 18 C -0.14 -1.68 5.38 -28.07 -0.15 -1.83 16 19 C -0.12 -1.21 5.66 -26.44 -0.15 -1.36 16 20 C -0.09 -1.18 2.82 -90.44 -0.25 -1.43 16 21 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 22 C 0.06 0.94 4.14 -3.85 -0.02 0.93 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 25 H 0.03 0.82 7.98 -51.93 -0.41 0.41 16 26 H 0.09 1.73 6.71 -51.93 -0.35 1.38 16 27 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.40 5.07 8.68 -40.82 -0.35 4.72 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.31 6.81 -51.93 -0.35 0.96 16 33 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.02 0.44 5.51 -51.93 -0.29 0.15 16 36 H 0.07 1.20 8.00 -51.93 -0.42 0.78 16 LS Contribution 280.85 15.07 4.23 4.23 Total: -1.00 -31.85 280.85 -8.23 -40.07 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.47 Total: 0.47 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -1.44 Total: -2.90 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.62 Total: -47.49 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.10 Total: -10.72 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.85 -8.23 -40.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160282462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.072 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds