Wall clock time and date at job start Sun Mar 29 2020 21:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99947 * 2 1 4 4 H 1.48496 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47237 * 300.00162 * 3 2 1 6 6 H 1.48497 * 109.47237 * 60.00304 * 3 2 1 7 7 C 1.37877 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00100 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46686 * 180.02562 * 9 7 2 11 11 C 1.46908 * 111.00195 * 293.95291 * 10 9 7 12 12 C 1.53016 * 109.24286 * 173.46883 * 11 10 9 13 13 C 1.52711 * 109.66238 * 58.89865 * 12 11 10 14 14 H 1.08998 * 107.75816 * 185.65231 * 13 12 11 15 15 N 1.45469 * 110.70988 * 67.00590 * 13 12 11 16 16 C 1.33478 * 123.89645 * 217.97344 * 15 13 12 17 17 O 1.21273 * 118.29017 * 182.35029 * 16 15 13 18 18 C 1.50260 * 123.43765 * 2.32140 * 16 15 13 19 19 C 1.53058 * 109.99984 * 342.45111 * 18 16 15 20 20 C 1.52770 * 110.20156 * 304.00480 * 13 12 11 21 21 H 1.09003 * 109.72949 * 293.75219 * 20 13 12 22 22 C 1.46788 * 110.99444 * 170.04540 * 10 9 7 23 23 H 0.96999 * 119.99677 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46777 * 60.00627 * 9 7 2 25 25 H 1.08996 * 109.46995 * 300.00209 * 9 7 2 26 26 H 1.08997 * 109.50723 * 53.54220 * 11 10 9 27 27 H 1.08998 * 109.51261 * 293.39657 * 11 10 9 28 28 H 1.09006 * 109.44341 * 298.84330 * 12 11 10 29 29 H 1.08996 * 109.40999 * 178.93827 * 12 11 10 30 30 H 0.96996 * 118.05498 * 37.94661 * 15 13 12 31 31 H 1.08997 * 109.43300 * 222.26663 * 18 16 15 32 32 H 1.09004 * 109.35929 * 102.58926 * 18 16 15 33 33 H 1.09002 * 109.68617 * 289.13270 * 19 18 16 34 34 H 1.09002 * 109.68237 * 168.60758 * 19 18 16 35 35 H 1.09004 * 109.41510 * 66.04094 * 22 10 9 36 36 H 1.09001 * 109.41683 * 306.23536 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9710 -3.6540 -1.2539 12 6 4.0600 -4.7237 -1.1473 13 6 3.4200 -6.0829 -0.8730 14 1 4.2229 -6.8000 -0.7026 15 7 2.6386 -6.5240 -2.0179 16 6 1.4746 -7.1699 -1.9204 17 8 0.9293 -7.5293 -2.9423 18 6 0.8046 -7.4758 -0.6107 19 6 1.8120 -7.3496 0.5347 20 6 2.5532 -6.0139 0.3831 21 1 3.1831 -5.8414 1.2558 22 6 1.5215 -4.8926 0.2364 23 1 -0.4849 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 3.4317 -2.6818 -1.4289 27 1 2.3034 -3.8955 -2.0809 28 1 4.7383 -4.4711 -0.3323 29 1 4.6175 -4.7675 -2.0829 30 1 2.9837 -6.3374 -2.9050 31 1 0.4091 -8.4912 -0.6341 32 1 -0.0142 -6.7742 -0.4511 33 1 2.5253 -8.1726 0.4888 34 1 1.2869 -7.3717 1.4896 35 1 0.8640 -5.1128 -0.6046 36 1 0.9299 -4.8228 1.1492 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160282462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:07 Heat of formation + Delta-G solvation = -68.212442 kcal Electronic energy + Delta-G solvation = -17812.470576 eV Core-core repulsion = 15101.602883 eV Total energy + Delta-G solvation = -2710.867693 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.93693 -39.37617 -36.78927 -34.83307 -34.64305 -32.24331 -30.32281 -28.94859 -25.67345 -25.57469 -23.48750 -22.98271 -21.59624 -19.25897 -18.43419 -17.85189 -17.12472 -16.87408 -16.78791 -16.24008 -15.63732 -15.33537 -14.80984 -14.69238 -14.33681 -14.21833 -14.00004 -13.58591 -13.08123 -12.95645 -12.78387 -12.54737 -12.28535 -12.11760 -11.96799 -11.76842 -11.65684 -11.35973 -11.12375 -10.73387 -10.63347 -10.01610 -9.01699 -8.22352 -6.32956 1.40641 1.40863 1.54632 1.59602 2.35870 2.39292 3.10212 3.26517 3.58686 3.65274 3.74870 3.88755 4.23002 4.23817 4.37065 4.39766 4.54112 4.61883 4.72439 4.77488 4.89523 4.93209 5.03641 5.11341 5.19291 5.20246 5.23040 5.29350 5.36778 5.64072 5.82441 6.03471 6.30942 6.37361 6.63185 6.84276 7.19116 7.37338 8.89235 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038149 B = 0.006267 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.789757 B = 4466.568609 C = 4584.284064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.002 4.002 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.068 0.932 9 C 0.208 3.792 10 N -0.533 5.533 11 C 0.063 3.937 12 C -0.117 4.117 13 C 0.144 3.856 14 H 0.109 0.891 15 N -0.704 5.704 16 C 0.514 3.486 17 O -0.617 6.617 18 C -0.138 4.138 19 C -0.106 4.106 20 C -0.088 4.088 21 H 0.117 0.883 22 C 0.054 3.946 23 H 0.264 0.736 24 H -0.051 1.051 25 H 0.004 0.996 26 H 0.062 0.938 27 H -0.001 1.001 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.397 0.603 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.007 0.993 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.129 -14.232 2.031 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.796 3.204 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.081 3.919 10 N -0.257 5.257 11 C -0.066 4.066 12 C -0.155 4.155 13 C 0.040 3.960 14 H 0.127 0.873 15 N -0.354 5.354 16 C 0.303 3.697 17 O -0.501 6.501 18 C -0.177 4.177 19 C -0.144 4.144 20 C -0.107 4.107 21 H 0.135 0.865 22 C -0.074 4.074 23 H 0.072 0.928 24 H -0.034 1.034 25 H 0.022 0.978 26 H 0.080 0.920 27 H 0.017 0.983 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.025 0.975 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.977 -14.270 2.152 16.996 hybrid contribution -0.897 1.354 -1.286 2.071 sum 8.080 -12.916 0.866 15.260 Atomic orbital electron populations 1.70112 1.07917 1.27841 1.51953 1.25982 0.95736 1.03454 0.94832 0.85296 0.79127 0.78363 0.77608 1.18258 1.20780 1.20327 1.21506 0.93768 0.90856 1.49739 0.91396 1.19345 0.90184 0.89482 0.92846 1.62081 1.26695 1.02639 1.34280 1.21953 0.95548 0.99802 0.89273 1.21892 0.97072 0.92279 1.04240 1.21000 0.93496 0.96577 0.84953 0.87312 1.45616 1.22022 1.56726 1.10999 1.20771 0.80558 0.76221 0.92128 1.90701 1.64373 1.55893 1.39102 1.21740 0.99811 1.04948 0.91223 1.21731 0.97911 0.96569 0.98202 1.21541 0.96758 0.93860 0.98555 0.86460 1.22248 0.95877 0.89940 0.99360 0.92753 1.03376 0.97811 0.91991 0.98278 0.88208 0.89225 0.76723 0.86860 0.89233 0.88376 0.88470 0.97520 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.18 13.29 21.45 0.28 -56.90 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 3 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.52 -29.35 8.42 25.60 0.22 -29.14 16 8 H 0.07 3.70 7.14 -2.91 -0.02 3.68 16 9 C 0.21 11.18 4.72 85.56 0.40 11.59 16 10 N -0.53 -22.00 4.65 -900.89 -4.19 -26.20 16 11 C 0.06 2.30 5.21 86.31 0.45 2.75 16 12 C -0.12 -2.76 5.70 30.50 0.17 -2.59 16 13 C 0.14 2.94 2.99 45.01 0.13 3.07 16 14 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 15 N -0.70 -17.50 4.71 -447.66 -2.11 -19.61 16 16 C 0.51 15.19 6.90 87.72 0.60 15.80 16 17 O -0.62 -23.77 17.79 -3.01 -0.05 -23.82 16 18 C -0.14 -3.11 5.38 29.73 0.16 -2.95 16 19 C -0.11 -1.76 5.66 30.78 0.17 -1.59 16 20 C -0.09 -1.93 2.82 -10.68 -0.03 -1.96 16 21 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 22 C 0.05 1.80 4.14 86.35 0.36 2.16 16 23 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 24 H -0.05 -3.11 8.12 -2.39 -0.02 -3.13 16 25 H 0.00 0.22 7.98 -2.39 -0.02 0.20 16 26 H 0.06 2.54 6.71 -2.39 -0.02 2.52 16 27 H 0.00 -0.04 7.91 -2.39 -0.02 -0.06 16 28 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.40 9.62 8.68 -92.71 -0.80 8.82 16 31 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.09 2.28 6.81 -2.38 -0.02 2.26 16 33 H 0.10 1.18 8.13 -2.39 -0.02 1.16 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.01 0.25 5.51 -2.39 -0.01 0.23 16 36 H 0.07 2.25 8.00 -2.39 -0.02 2.23 16 Total: -1.00 -72.82 280.85 -0.67 -73.49 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.27 Total: 9.45 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 3.11 Total: -2.54 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -6.01 Total: -102.70 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.05 Total: -23.82 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -72.82 -0.67 -73.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160282462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.273 kcal (2) G-P(sol) polarization free energy of solvation -72.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds