Wall clock time and date at job start Sun Mar 29 2020 22:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35449 * 126.78045 * 2 1 4 4 C 1.41376 * 103.99001 * 180.10007 * 3 2 1 5 5 C 1.50704 * 126.80555 * 179.88758 * 4 3 2 6 6 N 1.46908 * 109.46862 * 94.70484 * 5 4 3 7 7 C 1.46897 * 111.00118 * 293.95553 * 6 5 4 8 8 C 1.46902 * 110.99486 * 170.00391 * 6 5 4 9 9 C 1.53006 * 109.46626 * 190.00122 * 8 6 5 10 10 C 1.52999 * 109.46623 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99816 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00344 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99769 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00300 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46819 * 59.99744 * 15 13 11 17 17 H 1.48494 * 109.47285 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47196 * 300.00241 * 15 13 11 19 19 N 1.30175 * 106.39579 * 359.62078 * 4 3 2 20 20 O 1.20926 * 111.60453 * 0.24690 * 19 4 3 21 21 H 1.08995 * 109.47099 * 180.30406 * 1 2 3 22 22 H 1.09006 * 109.46870 * 300.30202 * 1 2 3 23 23 H 1.08995 * 109.46941 * 60.29891 * 1 2 3 24 24 H 1.08003 * 128.00801 * 359.95928 * 3 2 1 25 25 H 1.08998 * 109.46802 * 334.71192 * 5 4 3 26 26 H 1.08991 * 109.47544 * 214.70480 * 5 4 3 27 27 H 1.09000 * 109.47532 * 296.04673 * 7 6 5 28 28 H 1.09001 * 109.47296 * 56.04647 * 7 6 5 29 29 H 1.08997 * 109.47027 * 176.04791 * 7 6 5 30 30 H 1.08993 * 109.47737 * 70.00254 * 8 6 5 31 31 H 1.09000 * 109.47263 * 309.99816 * 8 6 5 32 32 H 1.09000 * 109.47050 * 299.99824 * 9 8 6 33 33 H 1.09001 * 109.46801 * 59.99937 * 9 8 6 34 34 H 1.09000 * 109.47486 * 299.99829 * 10 9 8 35 35 H 1.09001 * 109.47362 * 60.00551 * 10 9 8 36 36 H 0.97000 * 120.00540 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0024 5 6 4.9212 1.2999 -0.0058 6 7 5.4039 1.4508 1.3735 7 6 4.5003 2.3035 2.1572 8 6 6.7756 1.9762 1.3965 9 6 7.3324 1.8860 2.8188 10 6 8.7612 2.4326 2.8427 11 6 9.3094 2.3443 4.2437 12 1 8.6999 1.9385 5.0375 13 6 10.5892 2.7816 4.5121 14 7 11.3316 3.2753 3.5453 15 14 11.2685 2.6729 6.2488 16 1 11.2738 1.2550 6.6903 17 1 12.6553 3.2033 6.2720 18 1 10.4165 3.4732 7.1645 19 7 3.4764 -0.7564 0.0047 20 8 2.3095 -1.0737 0.0061 21 1 -0.3633 -1.0276 0.0055 22 1 -0.3633 0.5186 0.8873 23 1 -0.3633 0.5092 -0.8926 24 1 2.0346 2.1270 -0.0006 25 1 4.7633 2.2848 -0.4452 26 1 5.6608 0.7548 -0.5920 27 1 4.4962 3.3099 1.7386 28 1 3.4917 1.8918 2.1233 29 1 4.8426 2.3416 3.1914 30 1 6.7715 3.0171 1.0733 31 1 7.4008 1.3893 0.7237 32 1 6.7071 2.4729 3.4916 33 1 7.3365 0.8450 3.1420 34 1 9.3862 1.8453 2.1699 35 1 8.7575 3.4735 2.5193 36 1 12.2321 3.5826 3.7339 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160967289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:04 Heat of formation + Delta-G solvation = 49.619874 kcal Electronic energy + Delta-G solvation = -16348.493934 eV Core-core repulsion = 13642.735833 eV Total energy + Delta-G solvation = -2705.758100 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.97187 -37.80077 -34.52457 -33.65346 -33.10853 -31.19378 -28.00449 -27.83221 -27.03046 -24.38971 -23.08471 -21.74103 -19.89683 -19.75973 -17.71036 -17.25491 -16.29315 -15.38671 -15.16480 -14.92053 -14.35422 -14.01549 -13.88137 -13.57282 -13.47442 -12.79438 -12.51698 -12.29219 -11.96370 -11.74190 -11.48325 -11.23317 -11.04796 -10.77994 -10.55084 -10.52159 -10.19569 -9.59221 -9.42512 -9.29453 -9.04617 -8.31209 -8.13243 -5.96711 -3.98693 1.38917 2.14415 3.02000 3.36070 3.39920 3.42983 4.07297 4.20863 4.41777 4.50448 4.88590 4.98199 5.06314 5.12902 5.32231 5.34770 5.38977 5.48314 5.54446 5.64723 5.71904 5.83027 5.94909 5.99609 6.11522 6.32009 6.71025 6.76834 7.11773 7.28685 7.35242 7.71352 7.86550 8.03744 8.27244 8.47225 9.08220 9.65080 11.14788 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.059581 B = 0.003622 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.834197 B = 7729.104954 C = 7829.639148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.041 4.041 3 C -0.232 4.232 4 C 0.034 3.966 5 C 0.128 3.872 6 N -0.537 5.537 7 C 0.022 3.978 8 C 0.057 3.943 9 C -0.105 4.105 10 C 0.022 3.978 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.348 5.348 20 O 0.098 5.902 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.168 0.832 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.024 0.976 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.576 -3.005 -8.772 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.104 4.104 3 C -0.254 4.254 4 C -0.126 4.126 5 C 0.000 4.000 6 N -0.262 5.262 7 C -0.126 4.126 8 C -0.070 4.070 9 C -0.143 4.143 10 C -0.015 4.015 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 N -0.052 5.052 20 O 0.031 5.969 21 H 0.100 0.900 22 H 0.107 0.893 23 H 0.106 0.894 24 H 0.185 0.815 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.522 -4.426 -8.594 22.685 hybrid contribution 0.132 1.633 0.583 1.739 sum -20.390 -2.793 -8.010 22.084 Atomic orbital electron populations 1.20305 0.84231 1.04543 1.03918 1.24468 0.96320 0.86414 1.03215 1.22406 0.91585 1.00855 1.10516 1.23439 0.96896 0.89936 1.02329 1.20362 0.90639 0.97209 0.91799 1.62016 1.03365 1.50825 1.10002 1.22447 0.96504 0.94159 0.99474 1.22345 0.86617 0.97254 1.00749 1.21659 0.98902 1.01165 0.92531 1.19069 0.89438 0.95963 0.97048 1.21221 0.98850 1.40915 0.94732 0.92732 1.25025 0.97078 0.95363 0.97032 1.69955 1.09539 1.42330 1.31849 0.86652 0.77933 0.78430 0.84960 1.20208 1.21315 1.20273 1.73873 0.96309 1.16530 1.18449 1.84859 1.11468 1.33194 1.67417 0.89984 0.89302 0.89363 0.81492 0.92687 0.89070 0.95697 0.92193 0.90467 0.94997 0.91031 0.93382 0.92561 0.96570 0.96807 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.45 36.01 0.38 0.02 16 2 C -0.04 -0.39 7.49 -35.30 -0.26 -0.66 16 3 C -0.23 -2.44 10.00 -39.38 -0.39 -2.83 16 4 C 0.03 0.46 6.02 -82.10 -0.49 -0.04 16 5 C 0.13 1.77 5.56 -4.97 -0.03 1.74 16 6 N -0.54 -8.66 4.75 -244.37 -1.16 -9.82 16 7 C 0.02 0.32 9.14 60.06 0.55 0.87 16 8 C 0.06 1.03 4.96 -3.82 -0.02 1.01 16 9 C -0.10 -2.25 5.08 -26.73 -0.14 -2.39 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 15 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 N -0.35 -5.28 12.07 33.42 0.40 -4.87 16 20 O 0.10 1.26 11.20 17.15 0.19 1.45 16 21 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 25 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 26 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.78 6.35 -51.93 -0.33 0.45 16 29 H 0.08 1.18 6.47 -51.93 -0.34 0.84 16 30 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 31 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 32 H 0.05 1.01 6.55 -51.93 -0.34 0.67 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 302.97 15.07 4.57 4.57 Total: -1.00 -32.71 302.97 -6.84 -39.55 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -5.60 Total: -5.55 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -0.96 Total: -15.68 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.02 Total: -41.40 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.19 Total: 1.45 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.71 -6.84 -39.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160967289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.171 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds