Wall clock time and date at job start Sun Mar 29 2020 22:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35449 * 126.78045 * 2 1 4 4 C 1.41376 * 103.99001 * 180.10007 * 3 2 1 5 5 C 1.50704 * 126.80555 * 179.88758 * 4 3 2 6 6 N 1.46908 * 109.46862 * 94.70484 * 5 4 3 7 7 C 1.46897 * 111.00118 * 293.95553 * 6 5 4 8 8 C 1.46902 * 110.99486 * 170.00391 * 6 5 4 9 9 C 1.53006 * 109.46626 * 190.00122 * 8 6 5 10 10 C 1.52999 * 109.46623 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99816 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00344 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99769 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00300 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46819 * 59.99744 * 15 13 11 17 17 H 1.48494 * 109.47285 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47196 * 300.00241 * 15 13 11 19 19 N 1.30175 * 106.39579 * 359.62078 * 4 3 2 20 20 O 1.20926 * 111.60453 * 0.24690 * 19 4 3 21 21 H 1.08995 * 109.47099 * 180.30406 * 1 2 3 22 22 H 1.09006 * 109.46870 * 300.30202 * 1 2 3 23 23 H 1.08995 * 109.46941 * 60.29891 * 1 2 3 24 24 H 1.08003 * 128.00801 * 359.95928 * 3 2 1 25 25 H 1.08998 * 109.46802 * 334.71192 * 5 4 3 26 26 H 1.08991 * 109.47544 * 214.70480 * 5 4 3 27 27 H 1.09000 * 109.47532 * 296.04673 * 7 6 5 28 28 H 1.09001 * 109.47296 * 56.04647 * 7 6 5 29 29 H 1.08997 * 109.47027 * 176.04791 * 7 6 5 30 30 H 1.08993 * 109.47737 * 70.00254 * 8 6 5 31 31 H 1.09000 * 109.47263 * 309.99816 * 8 6 5 32 32 H 1.09000 * 109.47050 * 299.99824 * 9 8 6 33 33 H 1.09001 * 109.46801 * 59.99937 * 9 8 6 34 34 H 1.09000 * 109.47486 * 299.99829 * 10 9 8 35 35 H 1.09001 * 109.47362 * 60.00551 * 10 9 8 36 36 H 0.97000 * 120.00540 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5372 -0.0024 5 6 4.9212 1.2999 -0.0058 6 7 5.4039 1.4508 1.3735 7 6 4.5003 2.3035 2.1572 8 6 6.7756 1.9762 1.3965 9 6 7.3324 1.8860 2.8188 10 6 8.7612 2.4326 2.8427 11 6 9.3094 2.3443 4.2437 12 1 8.6999 1.9385 5.0375 13 6 10.5892 2.7816 4.5121 14 7 11.3316 3.2753 3.5453 15 14 11.2685 2.6729 6.2488 16 1 11.2738 1.2550 6.6903 17 1 12.6553 3.2033 6.2720 18 1 10.4165 3.4732 7.1645 19 7 3.4764 -0.7564 0.0047 20 8 2.3095 -1.0737 0.0061 21 1 -0.3633 -1.0276 0.0055 22 1 -0.3633 0.5186 0.8873 23 1 -0.3633 0.5092 -0.8926 24 1 2.0346 2.1270 -0.0006 25 1 4.7633 2.2848 -0.4452 26 1 5.6608 0.7548 -0.5920 27 1 4.4962 3.3099 1.7386 28 1 3.4917 1.8918 2.1233 29 1 4.8426 2.3416 3.1914 30 1 6.7715 3.0171 1.0733 31 1 7.4008 1.3893 0.7237 32 1 6.7071 2.4729 3.4916 33 1 7.3365 0.8450 3.1420 34 1 9.3862 1.8453 2.1699 35 1 8.7575 3.4735 2.5193 36 1 12.2321 3.5826 3.7339 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160967289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:04 Heat of formation + Delta-G solvation = 28.212912 kcal Electronic energy + Delta-G solvation = -16349.422209 eV Core-core repulsion = 13642.735833 eV Total energy + Delta-G solvation = -2706.686376 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.89968 -39.07889 -36.01426 -34.96216 -34.18915 -33.02820 -29.12768 -28.73737 -28.50261 -26.05672 -24.09162 -23.34698 -21.57245 -20.71564 -18.68810 -18.46346 -18.12982 -16.75238 -16.62876 -16.23440 -15.94751 -15.22277 -14.90643 -14.50497 -14.28699 -13.92613 -13.70837 -13.64763 -13.29474 -13.12785 -12.97562 -12.73258 -12.59983 -12.41871 -12.30241 -11.94867 -11.48000 -11.39518 -11.24321 -11.02285 -10.55388 -10.20518 -9.36397 -8.20946 -6.32096 0.58140 1.22341 1.39112 1.42569 1.50530 2.30929 2.40421 2.97190 3.11970 3.23057 3.59638 4.06646 4.13906 4.18204 4.24761 4.34337 4.49310 4.56737 4.63046 4.67582 4.69945 4.78068 4.89832 4.94931 4.99471 5.02914 5.05504 5.22847 5.30297 5.50246 5.72354 5.84479 5.97913 6.04990 6.26063 6.84144 7.36980 7.39768 8.90848 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.059581 B = 0.003622 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.834197 B = 7729.104954 C = 7829.639148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.030 4.030 3 C -0.237 4.237 4 C 0.018 3.982 5 C 0.130 3.870 6 N -0.552 5.552 7 C 0.025 3.975 8 C 0.070 3.930 9 C -0.089 4.089 10 C 0.027 3.973 11 C -0.546 4.546 12 H 0.057 0.943 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.966 3.034 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.265 1.265 19 N -0.391 5.391 20 O 0.086 5.914 21 H 0.091 0.909 22 H 0.106 0.894 23 H 0.110 0.890 24 H 0.194 0.806 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.044 0.956 34 H -0.009 1.009 35 H -0.005 1.005 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.572 -2.568 -8.219 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 C -0.259 4.259 4 C -0.141 4.141 5 C 0.002 3.998 6 N -0.278 5.278 7 C -0.123 4.123 8 C -0.058 4.058 9 C -0.127 4.127 10 C -0.010 4.010 11 C -0.584 4.584 12 H 0.076 0.924 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.790 3.210 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.190 1.190 19 N -0.097 5.097 20 O 0.020 5.980 21 H 0.110 0.890 22 H 0.125 0.875 23 H 0.128 0.872 24 H 0.211 0.789 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.009 0.991 35 H 0.013 0.987 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.548 -3.996 -8.046 24.271 hybrid contribution 0.673 1.487 0.362 1.672 sum -21.875 -2.509 -7.684 23.321 Atomic orbital electron populations 1.20572 0.80707 1.05828 1.05734 1.25334 0.98055 0.85240 1.00763 1.22707 0.90130 1.02343 1.10697 1.23580 0.97842 0.89896 1.02788 1.20355 0.90814 0.98325 0.90290 1.61888 1.02614 1.51367 1.11900 1.22443 0.96635 0.94786 0.98424 1.22045 0.88013 0.97705 0.98011 1.21397 0.96160 0.99967 0.95216 1.18956 0.92027 0.94541 0.95518 1.21663 0.99580 1.41230 0.95894 0.92443 1.25985 0.97376 0.94683 1.01756 1.70084 1.09989 1.42983 1.34278 0.85496 0.77365 0.78863 0.79309 1.19362 1.20623 1.19019 1.73866 0.97690 1.17676 1.20436 1.84805 1.11230 1.34432 1.67551 0.89046 0.87535 0.87167 0.78866 0.90470 0.89944 0.94238 0.90779 0.91828 0.94378 0.91474 0.92838 0.93686 0.99065 0.98707 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 71.24 0.74 0.28 16 2 C -0.03 -0.52 7.49 25.04 0.19 -0.33 16 3 C -0.24 -4.43 10.00 22.40 0.22 -4.21 16 4 C 0.02 0.46 6.02 43.58 0.26 0.73 16 5 C 0.13 3.48 5.56 85.56 0.48 3.95 16 6 N -0.55 -17.44 4.75 -927.04 -4.41 -21.85 16 7 C 0.02 0.67 9.14 127.69 1.17 1.84 16 8 C 0.07 2.51 4.96 86.31 0.43 2.93 16 9 C -0.09 -3.91 5.08 30.60 0.16 -3.75 16 10 C 0.03 1.48 4.97 29.85 0.15 1.63 16 11 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 12 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 13 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 14 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 15 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 N -0.39 -11.81 12.07 -49.55 -0.60 -12.41 16 20 O 0.09 2.14 11.20 71.55 0.80 2.94 16 21 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 22 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 23 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 24 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 25 H 0.08 1.70 8.12 -2.39 -0.02 1.68 16 26 H 0.08 2.30 7.93 -2.39 -0.02 2.28 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.78 6.35 -2.39 -0.02 1.77 16 29 H 0.06 1.88 6.47 -2.39 -0.02 1.86 16 30 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 31 H 0.07 2.45 7.93 -2.39 -0.02 2.43 16 32 H 0.05 2.26 6.55 -2.39 -0.02 2.24 16 33 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 34 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -71.40 302.97 3.64 -67.76 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: 1.05 Total: 2.25 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 4.49 Total: -28.39 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -4.72 Total: -91.81 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.80 Total: 2.94 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -71.40 3.64 -67.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160967289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.976 kcal (2) G-P(sol) polarization free energy of solvation -71.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds