Wall clock time and date at job start Sun Mar 29 2020 22:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47242 * 2 1 4 4 N 1.30174 * 126.79748 * 270.02013 * 3 2 1 5 5 O 1.20925 * 111.60297 * 179.97438 * 4 3 2 6 6 C 1.34045 * 111.56542 * 359.76514 * 5 4 3 7 7 C 1.50700 * 126.77638 * 180.28446 * 6 5 4 8 8 C 1.35447 * 106.44469 * 0.38220 * 6 5 4 9 9 C 1.50699 * 128.00400 * 179.91333 * 8 6 5 10 10 N 1.46495 * 109.47284 * 269.33050 * 9 8 6 11 11 C 1.36938 * 120.00277 * 265.23749 * 10 9 8 12 12 H 1.08000 * 119.99950 * 143.03118 * 11 10 9 13 13 C 1.38806 * 119.99907 * 323.03044 * 11 10 9 14 14 N 1.31622 * 120.00089 * 160.81255 * 13 11 10 15 15 Si 1.86806 * 120.00004 * 340.80426 * 13 11 10 16 16 H 1.48497 * 109.46502 * 95.38707 * 15 13 11 17 17 H 1.48498 * 109.47055 * 215.38454 * 15 13 11 18 18 H 1.48492 * 109.47112 * 335.38632 * 15 13 11 19 19 C 1.46499 * 119.99852 * 85.23371 * 10 9 8 20 20 C 1.53004 * 109.47195 * 86.70324 * 19 10 9 21 21 H 1.08993 * 109.47214 * 300.00234 * 1 2 3 22 22 H 1.08996 * 109.46680 * 60.00569 * 1 2 3 23 23 H 1.09001 * 109.47098 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47376 * 239.99337 * 2 1 3 25 25 H 1.09002 * 109.46836 * 119.99851 * 2 1 3 26 26 H 1.09006 * 109.47017 * 274.52881 * 7 6 5 27 27 H 1.08994 * 109.47170 * 34.52362 * 7 6 5 28 28 H 1.09001 * 109.47303 * 154.52909 * 7 6 5 29 29 H 1.09005 * 109.46973 * 149.33549 * 9 8 6 30 30 H 1.09003 * 109.47425 * 29.33757 * 9 8 6 31 31 H 0.96998 * 120.00227 * 180.02562 * 14 13 11 32 32 H 1.08997 * 109.47814 * 206.70336 * 19 10 9 33 33 H 1.08999 * 109.47266 * 326.70579 * 19 10 9 34 34 H 1.09007 * 109.47102 * 304.40627 * 20 19 10 35 35 H 1.09005 * 109.47374 * 64.40098 * 20 19 10 36 36 H 1.08997 * 109.47386 * 184.40682 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2920 2.1561 -1.0424 5 8 2.6806 3.2564 -0.7254 6 6 2.7254 3.3983 0.6067 7 6 3.1511 4.6264 1.3694 8 6 2.3146 2.2194 1.1320 9 6 2.1826 1.8473 2.5863 10 7 3.4393 1.2586 3.0558 11 6 3.6006 -0.1013 3.0553 12 1 4.5604 -0.5311 2.8093 13 6 2.5307 -0.9273 3.3709 14 7 2.5512 -2.1949 3.0173 15 14 1.0617 -0.2398 4.2978 16 1 0.0053 0.1518 3.3304 17 1 0.5295 -1.2751 5.2198 18 1 1.4826 0.9502 5.0799 19 6 4.5233 2.1246 3.5258 20 6 4.3246 2.4297 5.0119 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 4.2349 4.6237 1.4867 27 1 2.8473 5.5181 0.8212 28 1 2.6793 4.6256 2.3520 29 1 1.3760 1.1237 2.7045 30 1 1.9587 2.7397 3.1709 31 1 1.8033 -2.7721 3.2375 32 1 5.4791 1.6205 3.3831 33 1 4.5158 3.0560 2.9596 34 1 3.3360 2.8628 5.1649 35 1 4.4100 1.5075 5.5868 36 1 5.0859 3.1361 5.3428 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163177375.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:47 Heat of formation + Delta-G solvation = 69.495988 kcal Electronic energy + Delta-G solvation = -18169.306280 eV Core-core repulsion = 15464.410073 eV Total energy + Delta-G solvation = -2704.896207 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.24448 -36.81722 -34.60496 -33.11268 -31.94967 -30.77086 -29.77813 -27.57365 -26.04977 -23.83173 -23.68112 -21.38265 -19.95555 -19.24834 -17.15076 -16.88834 -16.23790 -15.31597 -14.58564 -14.14285 -13.95165 -13.47256 -13.24509 -13.00234 -12.88859 -12.58772 -12.21273 -12.08660 -11.95977 -11.77917 -11.38978 -11.03086 -10.94859 -10.81500 -10.59980 -10.23474 -10.09622 -9.91251 -9.64713 -9.15897 -8.60808 -8.49970 -6.96979 -6.04855 -3.47803 2.06194 2.90690 3.23034 3.41189 3.43406 3.70434 4.43602 4.84155 5.04013 5.06567 5.24782 5.42216 5.56210 5.61821 5.68755 5.79571 5.86296 5.89496 5.97351 6.08272 6.12401 6.23045 6.31111 6.37594 6.43788 6.48567 6.50902 6.64613 6.74968 6.76034 6.99365 7.07922 7.97883 8.32069 8.89625 8.92869 9.62770 10.03242 11.09829 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019254 B = 0.013521 C = 0.009369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.903352 B = 2070.320730 C = 2987.926348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C 0.048 3.952 4 N -0.384 5.384 5 O 0.082 5.918 6 C -0.061 4.061 7 C -0.063 4.063 8 C -0.183 4.183 9 C 0.203 3.797 10 N -0.596 5.596 11 C -0.263 4.263 12 H 0.080 0.920 13 C 0.038 3.962 14 N -0.898 5.898 15 Si 0.867 3.133 16 H -0.282 1.282 17 H -0.301 1.301 18 H -0.266 1.266 19 C 0.144 3.856 20 C -0.169 4.169 21 H 0.053 0.947 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.264 0.736 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 10.721 -1.170 10.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.096 4.096 3 C -0.110 4.110 4 N -0.091 5.091 5 O 0.018 5.982 6 C -0.125 4.125 7 C -0.121 4.121 8 C -0.190 4.190 9 C 0.077 3.923 10 N -0.318 5.318 11 C -0.392 4.392 12 H 0.098 0.902 13 C -0.162 4.162 14 N -0.539 5.539 15 Si 0.698 3.302 16 H -0.210 1.210 17 H -0.229 1.229 18 H -0.191 1.191 19 C 0.018 3.982 20 C -0.228 4.228 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.138 0.862 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.515 10.347 -2.460 10.743 hybrid contribution -0.880 0.102 1.269 1.548 sum -2.395 10.450 -1.191 10.786 Atomic orbital electron populations 1.21678 0.95143 1.01776 1.01202 1.20133 0.95304 0.88521 1.05659 1.23435 1.00550 0.98822 0.88243 1.73722 1.18027 0.92994 1.24328 1.84689 1.63707 1.27070 1.22720 1.24055 1.05599 0.99024 0.83826 1.20207 1.02140 0.91399 0.98319 1.22212 1.04502 0.92197 1.00053 1.19588 0.90768 0.96802 0.85148 1.44150 1.12933 1.03410 1.71277 1.18820 0.99247 0.79317 1.41830 0.90249 1.25394 0.98037 0.94871 0.97882 1.69833 1.32104 1.05487 1.46473 0.87098 0.83391 0.78768 0.80990 1.21019 1.22883 1.19057 1.20908 0.92043 0.93332 0.91905 1.22331 0.99806 1.00720 0.99971 0.92828 0.93412 0.91990 0.91139 0.86178 0.90071 0.90747 0.89588 0.91351 0.93141 0.92599 0.92863 0.94364 0.93896 0.92590 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.90 37.16 0.37 -2.16 16 2 C -0.06 -1.21 6.44 -27.88 -0.18 -1.39 16 3 C 0.05 1.03 6.58 -82.10 -0.54 0.49 16 4 N -0.38 -7.95 12.07 33.42 0.40 -7.54 16 5 O 0.08 1.54 11.20 17.16 0.19 1.73 16 6 C -0.06 -1.06 7.49 -35.30 -0.26 -1.33 16 7 C -0.06 -0.78 9.35 36.01 0.34 -0.44 16 8 C -0.18 -3.71 5.90 -104.43 -0.62 -4.33 16 9 C 0.20 4.29 4.62 -5.20 -0.02 4.27 16 10 N -0.60 -13.45 2.09 -174.61 -0.37 -13.82 16 11 C -0.26 -6.97 9.65 -15.06 -0.15 -7.12 16 12 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 13 C 0.04 1.04 4.10 -17.43 -0.07 0.97 16 14 N -0.90 -25.72 13.97 55.49 0.78 -24.94 16 15 Si 0.87 21.01 24.79 -169.99 -4.21 16.79 16 16 H -0.28 -6.59 6.71 56.52 0.38 -6.21 16 17 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 18 H -0.27 -6.27 7.09 56.52 0.40 -5.87 16 19 C 0.14 2.71 6.41 -4.04 -0.03 2.68 16 20 C -0.17 -2.89 10.24 37.16 0.38 -2.51 16 21 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.12 2.90 6.53 -51.93 -0.34 2.56 16 26 H 0.08 0.92 7.58 -51.93 -0.39 0.52 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 0.99 7.31 -51.93 -0.38 0.61 16 29 H 0.07 1.58 3.19 -51.93 -0.17 1.41 16 30 H 0.05 0.95 7.31 -51.93 -0.38 0.57 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.05 1.03 8.01 -51.93 -0.42 0.61 16 33 H 0.04 0.63 6.46 -51.93 -0.34 0.29 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 293.61 15.07 4.42 4.42 Total: -1.00 -29.18 293.61 -4.94 -34.12 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.37 Total: 0.10 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.78 Total: -10.87 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.81 Total: -46.30 kcal Atomic # 8 Polarization: 1.54 SS G_CDS: 0.19 Total: 1.73 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.21 Total: 16.79 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.18 -4.94 -34.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163177375.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.612 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds