Wall clock time and date at job start Sun Mar 29 2020 22:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47242 * 2 1 4 4 N 1.30174 * 126.79748 * 270.02013 * 3 2 1 5 5 O 1.20925 * 111.60297 * 179.97438 * 4 3 2 6 6 C 1.34045 * 111.56542 * 359.76514 * 5 4 3 7 7 C 1.50700 * 126.77638 * 180.28446 * 6 5 4 8 8 C 1.35447 * 106.44469 * 0.38220 * 6 5 4 9 9 C 1.50699 * 128.00400 * 179.91333 * 8 6 5 10 10 N 1.46495 * 109.47284 * 269.33050 * 9 8 6 11 11 C 1.36938 * 120.00277 * 265.23749 * 10 9 8 12 12 H 1.08000 * 119.99950 * 143.03118 * 11 10 9 13 13 C 1.38806 * 119.99907 * 323.03044 * 11 10 9 14 14 N 1.31622 * 120.00089 * 160.81255 * 13 11 10 15 15 Si 1.86806 * 120.00004 * 340.80426 * 13 11 10 16 16 H 1.48497 * 109.46502 * 95.38707 * 15 13 11 17 17 H 1.48498 * 109.47055 * 215.38454 * 15 13 11 18 18 H 1.48492 * 109.47112 * 335.38632 * 15 13 11 19 19 C 1.46499 * 119.99852 * 85.23371 * 10 9 8 20 20 C 1.53004 * 109.47195 * 86.70324 * 19 10 9 21 21 H 1.08993 * 109.47214 * 300.00234 * 1 2 3 22 22 H 1.08996 * 109.46680 * 60.00569 * 1 2 3 23 23 H 1.09001 * 109.47098 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47376 * 239.99337 * 2 1 3 25 25 H 1.09002 * 109.46836 * 119.99851 * 2 1 3 26 26 H 1.09006 * 109.47017 * 274.52881 * 7 6 5 27 27 H 1.08994 * 109.47170 * 34.52362 * 7 6 5 28 28 H 1.09001 * 109.47303 * 154.52909 * 7 6 5 29 29 H 1.09005 * 109.46973 * 149.33549 * 9 8 6 30 30 H 1.09003 * 109.47425 * 29.33757 * 9 8 6 31 31 H 0.96998 * 120.00227 * 180.02562 * 14 13 11 32 32 H 1.08997 * 109.47814 * 206.70336 * 19 10 9 33 33 H 1.08999 * 109.47266 * 326.70579 * 19 10 9 34 34 H 1.09007 * 109.47102 * 304.40627 * 20 19 10 35 35 H 1.09005 * 109.47374 * 64.40098 * 20 19 10 36 36 H 1.08997 * 109.47386 * 184.40682 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2920 2.1561 -1.0424 5 8 2.6806 3.2564 -0.7254 6 6 2.7254 3.3983 0.6067 7 6 3.1511 4.6264 1.3694 8 6 2.3146 2.2194 1.1320 9 6 2.1826 1.8473 2.5863 10 7 3.4393 1.2586 3.0558 11 6 3.6006 -0.1013 3.0553 12 1 4.5604 -0.5311 2.8093 13 6 2.5307 -0.9273 3.3709 14 7 2.5512 -2.1949 3.0173 15 14 1.0617 -0.2398 4.2978 16 1 0.0053 0.1518 3.3304 17 1 0.5295 -1.2751 5.2198 18 1 1.4826 0.9502 5.0799 19 6 4.5233 2.1246 3.5258 20 6 4.3246 2.4297 5.0119 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 4.2349 4.6237 1.4867 27 1 2.8473 5.5181 0.8212 28 1 2.6793 4.6256 2.3520 29 1 1.3760 1.1237 2.7045 30 1 1.9587 2.7397 3.1709 31 1 1.8033 -2.7721 3.2375 32 1 5.4791 1.6205 3.3831 33 1 4.5158 3.0560 2.9596 34 1 3.3360 2.8628 5.1649 35 1 4.4100 1.5075 5.5868 36 1 5.0859 3.1361 5.3428 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163177375.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:47 Heat of formation + Delta-G solvation = 52.162949 kcal Electronic energy + Delta-G solvation = -18170.057897 eV Core-core repulsion = 15464.410073 eV Total energy + Delta-G solvation = -2705.647824 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.77959 -38.48820 -36.18285 -34.59533 -33.81780 -32.27072 -31.34800 -28.96879 -27.64924 -25.57978 -25.20932 -22.95764 -21.62014 -20.73562 -18.91903 -18.51257 -17.86983 -17.10006 -16.18821 -15.69515 -15.53177 -15.07725 -14.92116 -14.37684 -14.23539 -13.96029 -13.85239 -13.61420 -13.46587 -13.08239 -12.96816 -12.63647 -12.45882 -12.36674 -12.30732 -12.04201 -11.74489 -11.54097 -11.42350 -10.76299 -10.55273 -9.96950 -8.81151 -8.13539 -5.53386 0.63156 1.28035 1.34478 1.44286 1.51408 2.36259 2.43364 3.14574 3.29755 3.47339 3.67122 3.96888 4.15925 4.26991 4.33405 4.42143 4.45694 4.60194 4.67627 4.76056 4.78707 4.83817 4.88449 4.95926 4.96311 5.05830 5.11036 5.13807 5.29007 5.33891 5.40741 5.58851 5.98668 6.21435 7.01137 7.44228 7.65726 8.07408 9.05236 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019254 B = 0.013521 C = 0.009369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.903352 B = 2070.320730 C = 2987.926348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.057 4.057 3 C 0.027 3.973 4 N -0.401 5.401 5 O 0.087 5.913 6 C -0.032 4.032 7 C -0.067 4.067 8 C -0.217 4.217 9 C 0.206 3.794 10 N -0.607 5.607 11 C -0.252 4.252 12 H 0.035 0.965 13 C -0.004 4.004 14 N -0.943 5.943 15 Si 0.922 3.078 16 H -0.271 1.271 17 H -0.314 1.314 18 H -0.249 1.249 19 C 0.138 3.862 20 C -0.160 4.160 21 H 0.046 0.954 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.262 0.738 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.029 0.971 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 14.162 -0.680 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 C -0.131 4.131 4 N -0.108 5.108 5 O 0.024 5.976 6 C -0.096 4.096 7 C -0.123 4.123 8 C -0.224 4.224 9 C 0.080 3.920 10 N -0.329 5.329 11 C -0.382 4.382 12 H 0.053 0.947 13 C -0.200 4.200 14 N -0.587 5.587 15 Si 0.751 3.249 16 H -0.198 1.198 17 H -0.243 1.243 18 H -0.173 1.173 19 C 0.013 3.987 20 C -0.219 4.219 21 H 0.065 0.935 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.957 13.835 -1.972 14.111 hybrid contribution -0.615 -0.888 1.027 1.490 sum -2.571 12.947 -0.945 13.234 Atomic orbital electron populations 1.21612 0.93072 1.02634 1.01578 1.20011 0.97176 0.88641 1.03720 1.23575 1.01309 0.99032 0.89190 1.73704 1.18950 0.93650 1.24483 1.84665 1.63039 1.26278 1.23668 1.24879 1.02120 0.99635 0.83012 1.20552 1.03288 0.89931 0.98568 1.22151 1.07272 0.93555 0.99412 1.19542 0.89131 0.97154 0.86146 1.44253 1.14355 1.02242 1.72094 1.18574 0.97412 0.81620 1.40554 0.94696 1.25832 1.00611 0.94900 0.98707 1.69959 1.33211 1.07049 1.48451 0.86198 0.80810 0.78183 0.79665 1.19822 1.24329 1.17272 1.21091 0.90168 0.93719 0.93681 1.22215 1.01382 1.00422 0.97901 0.93482 0.91802 0.90948 0.91312 0.89788 0.88300 0.87609 0.88074 0.93607 0.89972 0.92920 0.94332 0.91124 0.93352 0.95169 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.90 71.98 0.71 -3.98 16 2 C -0.06 -2.44 6.44 29.85 0.19 -2.24 16 3 C 0.03 1.14 6.58 43.58 0.29 1.42 16 4 N -0.40 -16.15 12.07 -49.56 -0.60 -16.75 16 5 O 0.09 3.06 11.20 71.58 0.80 3.87 16 6 C -0.03 -1.00 7.49 25.04 0.19 -0.81 16 7 C -0.07 -1.26 9.35 71.24 0.67 -0.60 16 8 C -0.22 -8.40 5.90 -19.74 -0.12 -8.52 16 9 C 0.21 8.26 4.62 85.63 0.40 8.65 16 10 N -0.61 -26.79 2.09 -706.35 -1.48 -28.27 16 11 C -0.25 -13.69 9.65 84.03 0.81 -12.88 16 12 H 0.04 2.17 8.06 -2.91 -0.02 2.15 16 13 C 0.00 -0.21 4.10 84.86 0.35 0.14 16 14 N -0.94 -56.38 13.97 21.65 0.30 -56.08 16 15 Si 0.92 43.67 24.79 68.60 1.70 45.37 16 16 H -0.27 -12.21 6.71 99.48 0.67 -11.54 16 17 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 18 H -0.25 -10.97 7.09 99.48 0.71 -10.26 16 19 C 0.14 4.87 6.41 86.38 0.55 5.42 16 20 C -0.16 -4.96 10.24 71.98 0.74 -4.22 16 21 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 25 H 0.08 4.22 6.53 -2.39 -0.02 4.21 16 26 H 0.10 1.65 7.58 -2.38 -0.02 1.63 16 27 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 28 H 0.10 1.70 7.31 -2.39 -0.02 1.68 16 29 H 0.05 2.05 3.19 -2.38 -0.01 2.05 16 30 H 0.08 2.74 7.31 -2.39 -0.02 2.72 16 31 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 32 H 0.04 1.45 8.01 -2.39 -0.02 1.44 16 33 H 0.07 2.02 6.46 -2.39 -0.02 2.01 16 34 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -65.82 293.61 6.52 -59.30 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.02 Total: 10.17 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 4.77 Total: -17.61 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -1.77 Total: -101.09 kcal Atomic # 8 Polarization: 3.06 SS G_CDS: 0.80 Total: 3.87 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.70 Total: 45.37 kcal Total: -65.82 6.52 -59.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163177375.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.460 kcal (2) G-P(sol) polarization free energy of solvation -65.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds