Wall clock time and date at job start Sun Mar 29 2020 21:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00128 * 2 1 4 4 H 1.48494 * 109.46912 * 90.00459 * 3 2 1 5 5 H 1.48505 * 109.46886 * 330.00346 * 3 2 1 6 6 H 1.48495 * 109.47008 * 210.00330 * 3 2 1 7 7 C 1.37880 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99944 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47153 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47156 * 183.26266 * 10 9 7 12 12 C 1.46664 * 110.99925 * 300.08778 * 11 10 9 13 13 C 1.53855 * 110.01188 * 188.26182 * 12 11 10 14 14 N 1.47622 * 106.14101 * 308.20920 * 13 12 11 15 15 C 1.33538 * 127.63028 * 236.28116 * 14 13 12 16 16 O 1.21277 * 125.37828 * 339.08712 * 15 14 13 17 17 C 1.51508 * 109.24260 * 159.08690 * 15 14 13 18 18 C 1.54544 * 104.23662 * 23.60613 * 17 15 14 19 19 C 1.47587 * 120.77548 * 51.94140 * 14 13 12 20 20 H 1.09001 * 110.33965 * 66.26553 * 19 14 13 21 21 C 1.47162 * 111.00128 * 66.34917 * 11 10 9 22 22 H 0.97000 * 120.00467 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47202 * 299.99921 * 9 7 2 24 24 H 1.08996 * 109.46836 * 59.99839 * 9 7 2 25 25 H 1.08999 * 109.46928 * 303.26024 * 10 9 7 26 26 H 1.09004 * 109.46750 * 63.25958 * 10 9 7 27 27 H 1.08994 * 109.38353 * 308.43335 * 12 11 10 28 28 H 1.09003 * 109.37650 * 68.09844 * 12 11 10 29 29 H 1.09001 * 110.11136 * 189.05702 * 13 12 11 30 30 H 1.08993 * 110.11114 * 67.37040 * 13 12 11 31 31 H 1.08995 * 110.47635 * 142.29580 * 17 15 14 32 32 H 1.08993 * 110.47610 * 264.91823 * 17 15 14 33 33 H 1.08994 * 110.68473 * 221.35848 * 18 17 15 34 34 H 1.08999 * 110.68934 * 98.16383 * 18 17 15 35 35 H 1.08993 * 109.68631 * 290.86003 * 21 11 10 36 36 H 1.09002 * 109.68005 * 51.42136 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 1.4000 5 1 1.4465 2.6527 -0.7000 6 1 3.5466 1.4402 -0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5125 -4.9328 -0.0794 12 6 0.6048 -5.0878 1.0622 13 6 0.0055 -6.5048 1.0698 14 7 -0.5506 -6.7224 -0.2803 15 6 -1.8038 -7.0524 -0.6024 16 8 -2.6068 -7.5721 0.1433 17 6 -2.0641 -6.6751 -2.0465 18 6 -0.6594 -6.6438 -2.6902 19 6 0.2729 -6.4897 -1.4827 20 1 1.0891 -7.2107 -1.5283 21 6 0.8267 -5.0667 -1.3745 22 1 -0.4851 -0.8400 -0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5567 -0.8903 25 1 2.9097 -3.5720 -0.8599 26 1 2.8328 -3.6377 0.9173 27 1 1.1564 -4.9234 1.9878 28 1 -0.1990 -4.3554 0.9872 29 1 -0.7856 -6.5732 1.8165 30 1 0.7832 -7.2396 1.2777 31 1 -2.6886 -7.4262 -2.5302 32 1 -2.5326 -5.6928 -2.1054 33 1 -0.5630 -5.7914 -3.3625 34 1 -0.4564 -7.5762 -3.2170 35 1 0.0085 -4.3490 -1.4327 36 1 1.5333 -4.8853 -2.1845 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168517529.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:31 Heat of formation + Delta-G solvation = -34.091753 kcal Electronic energy + Delta-G solvation = -17541.292154 eV Core-core repulsion = 14831.904045 eV Total energy + Delta-G solvation = -2709.388109 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74204 -37.88852 -35.91524 -33.65490 -32.80388 -29.96838 -29.26191 -27.27157 -24.54333 -23.61662 -22.59606 -21.23128 -20.44329 -18.84354 -16.87965 -16.49098 -16.00574 -15.68847 -15.12052 -14.68876 -14.06047 -13.95135 -13.76780 -13.25793 -13.11380 -12.91332 -12.45936 -12.37887 -11.83995 -11.71375 -11.42399 -11.22060 -10.90106 -10.87721 -10.78999 -10.46637 -10.14867 -9.97245 -9.71604 -8.72519 -8.64144 -8.39646 -7.73755 -6.43876 -4.14174 2.58554 3.03982 3.39048 3.42127 3.57957 4.12233 4.34128 4.48454 4.57366 4.71569 4.96297 5.13317 5.21015 5.31852 5.36669 5.39771 5.51211 5.59705 5.67155 5.76226 5.81849 5.93784 6.03116 6.11441 6.17812 6.40228 6.55220 6.64380 7.13209 7.19076 7.26447 7.42968 7.54408 8.14205 8.21433 8.37477 8.79504 9.58797 10.96124 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036634 B = 0.005705 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.135430 B = 4906.691903 C = 4993.300291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 1.072 2.928 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.602 4.602 8 H 0.050 0.950 9 C -0.022 4.022 10 C 0.068 3.932 11 N -0.548 5.548 12 C 0.042 3.958 13 C 0.133 3.867 14 N -0.619 5.619 15 C 0.522 3.478 16 O -0.540 6.540 17 C -0.156 4.156 18 C -0.126 4.126 19 C 0.132 3.868 20 H 0.090 0.910 21 C 0.049 3.951 22 H 0.267 0.733 23 H 0.007 0.993 24 H 0.007 0.993 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.917 -12.877 -4.416 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.900 3.100 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.214 1.214 7 C -0.640 4.640 8 H 0.069 0.931 9 C -0.060 4.060 10 C -0.059 4.059 11 N -0.272 5.272 12 C -0.087 4.087 13 C 0.012 3.988 14 N -0.353 5.353 15 C 0.310 3.690 16 O -0.418 6.418 17 C -0.196 4.196 18 C -0.164 4.164 19 C 0.028 3.972 20 H 0.108 0.892 21 C -0.080 4.080 22 H 0.077 0.923 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.661 -11.910 -3.891 12.547 hybrid contribution -0.300 -0.824 0.006 0.877 sum 0.361 -12.734 -3.886 13.319 Atomic orbital electron populations 1.70769 1.06940 1.30485 1.46546 1.25881 0.96511 1.02859 0.93634 0.83505 0.74673 0.75022 0.76819 1.21411 1.20981 1.21401 1.21987 0.94306 0.91829 1.55926 0.93145 1.19786 0.95560 0.94688 0.95948 1.22198 0.96406 0.85798 1.01486 1.61773 1.27910 1.36397 1.01102 1.22461 0.95964 0.95210 0.95095 1.21970 0.97906 0.96706 0.82210 1.48628 1.11362 1.67957 1.07358 1.20672 0.81257 0.77008 0.90100 1.90696 1.50363 1.42657 1.58071 1.22408 0.98687 1.04511 0.94009 1.22290 0.93270 1.03982 0.96858 1.21881 0.93336 0.97893 0.84089 0.89225 1.22490 0.98199 0.94512 0.92844 0.92269 0.97461 0.97510 0.91568 0.91653 0.89752 0.93801 0.89449 0.90588 0.88354 0.87751 0.88969 0.89730 0.93551 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.77 13.65 55.43 0.76 -27.01 16 2 C 0.02 0.43 5.46 -17.82 -0.10 0.33 16 3 Si 1.07 25.02 29.90 -169.99 -5.08 19.94 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.60 -16.76 9.11 -34.44 -0.31 -17.07 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 9 C -0.02 -0.53 3.63 -27.88 -0.10 -0.63 16 10 C 0.07 1.34 5.25 -3.83 -0.02 1.32 16 11 N -0.55 -9.14 4.70 -234.00 -1.10 -10.24 16 12 C 0.04 0.67 4.98 -3.51 -0.02 0.65 16 13 C 0.13 1.88 7.14 -2.98 -0.02 1.86 16 14 N -0.62 -8.88 2.97 -163.64 -0.49 -9.37 16 15 C 0.52 7.97 8.03 -11.14 -0.09 7.88 16 16 O -0.54 -10.19 17.87 5.56 0.10 -10.10 16 17 C -0.16 -1.74 6.92 -26.67 -0.18 -1.93 16 18 C -0.13 -1.19 6.71 -25.75 -0.17 -1.37 16 19 C 0.13 1.61 3.74 -67.12 -0.25 1.36 16 20 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 21 C 0.05 0.72 4.44 -3.64 -0.02 0.71 16 22 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 23 H 0.01 0.19 6.64 -51.93 -0.34 -0.15 16 24 H 0.01 0.18 6.49 -51.93 -0.34 -0.16 16 25 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 26 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 27 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 28 H 0.04 0.82 6.83 -51.93 -0.35 0.47 16 29 H 0.09 1.22 8.03 -51.93 -0.42 0.81 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.09 0.80 7.82 -51.93 -0.41 0.39 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.80 6.88 -51.93 -0.36 0.45 16 36 H 0.08 1.18 8.02 -51.93 -0.42 0.76 16 LS Contribution 286.45 15.07 4.32 4.32 Total: -1.00 -32.69 286.45 -8.28 -40.97 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.50 Total: -1.64 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.29 Total: -6.88 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.83 Total: -46.61 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.10 Total: -10.10 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.69 -8.28 -40.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168517529.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.882 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds