Wall clock time and date at job start Sun Mar 29 2020 21:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48497 * 109.47300 * 240.00036 * 3 2 1 5 5 H 1.48509 * 109.46717 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47515 * 119.99441 * 3 2 1 7 7 C 1.37880 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46969 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47015 * 180.02562 * 10 9 7 12 12 C 1.46725 * 111.05755 * 296.23865 * 11 10 9 13 13 C 1.53852 * 110.03107 * 171.75050 * 12 11 10 14 14 N 1.47625 * 106.15071 * 51.79562 * 13 12 11 15 15 C 1.33536 * 127.62325 * 123.73406 * 14 13 12 16 16 O 1.21283 * 125.38103 * 20.93692 * 15 14 13 17 17 C 1.51509 * 109.23568 * 200.93913 * 15 14 13 18 18 C 1.56180 * 104.30961 * 336.17514 * 17 15 14 19 19 C 1.47589 * 120.77585 * 308.08617 * 14 13 12 20 20 H 1.09002 * 110.33890 * 293.69645 * 19 14 13 21 21 C 1.47171 * 110.99716 * 169.99894 * 11 10 9 22 22 H 0.97002 * 119.99791 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47051 * 60.00037 * 9 7 2 24 24 H 1.09000 * 109.47400 * 299.99796 * 9 7 2 25 25 H 1.08994 * 109.47078 * 60.00113 * 10 9 7 26 26 H 1.09000 * 109.46938 * 300.00134 * 10 9 7 27 27 H 1.08996 * 109.37115 * 51.57658 * 12 11 10 28 28 H 1.09002 * 109.27761 * 291.86730 * 12 11 10 29 29 H 1.08998 * 110.11152 * 292.63912 * 13 12 11 30 30 H 1.09001 * 110.20866 * 171.00158 * 13 12 11 31 31 H 1.08997 * 110.48108 * 95.07950 * 17 15 14 32 32 H 1.08999 * 110.47314 * 217.56319 * 17 15 14 33 33 H 1.08998 * 111.01173 * 262.37159 * 18 17 15 34 34 H 1.08995 * 111.09346 * 138.66483 * 18 17 15 35 35 H 1.09002 * 109.68157 * 69.13942 * 21 11 10 36 36 H 1.08999 * 109.68119 * 308.62399 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9343 -0.0001 12 6 0.7224 -5.0885 1.2278 13 6 -0.1924 -6.3204 1.1155 14 7 0.6786 -7.4437 0.7172 15 6 0.8427 -8.6106 1.3454 16 8 0.0635 -9.0976 2.1370 17 6 2.1560 -9.2300 0.9131 18 6 2.4433 -8.5908 -0.4827 19 6 1.5752 -7.3273 -0.4494 20 1 0.9936 -7.2437 -1.3674 21 6 2.4188 -6.0675 -0.2387 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8719 -3.6044 -0.8894 27 1 0.1128 -4.1979 1.3802 28 1 1.3967 -5.2146 2.0749 29 1 -0.9568 -6.1517 0.3570 30 1 -0.6596 -6.5314 2.0775 31 1 2.9469 -8.9796 1.6201 32 1 2.0558 -10.3115 0.8219 33 1 2.1279 -9.2536 -1.2885 34 1 3.4969 -8.3315 -0.5860 35 1 3.0716 -6.2027 0.6237 36 1 3.0199 -5.8754 -1.1275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168517627.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:33 Heat of formation + Delta-G solvation = -28.512184 kcal Electronic energy + Delta-G solvation = -17225.468972 eV Core-core repulsion = 14516.322811 eV Total energy + Delta-G solvation = -2709.146161 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.70425 -37.76449 -35.79884 -33.38693 -32.75319 -30.30840 -29.16522 -27.56049 -24.74341 -23.63604 -22.44591 -21.05017 -20.07656 -19.05087 -16.60726 -16.38933 -16.02440 -15.64316 -15.02005 -14.57603 -14.31098 -14.28490 -13.78716 -13.43053 -13.12783 -12.78355 -12.46008 -12.19586 -11.81498 -11.52229 -11.29745 -11.26816 -10.98277 -10.96037 -10.82810 -10.59688 -9.93764 -9.76441 -9.46419 -9.18664 -8.63386 -8.37166 -7.81082 -6.03857 -4.06700 2.55102 3.03376 3.30671 3.35572 3.37395 4.09319 4.27492 4.42546 4.52737 4.65849 4.92219 5.11640 5.18843 5.31915 5.32826 5.41052 5.48899 5.53396 5.65920 5.70262 5.75194 5.94001 6.05532 6.14833 6.24692 6.37410 6.58195 6.86874 7.20684 7.39310 7.45819 7.71406 7.81641 8.01226 8.18868 8.37556 8.99954 9.57310 11.07393 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052980 B = 0.004880 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.372771 B = 5736.880351 C = 6057.100872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.067 3.933 11 N -0.546 5.546 12 C 0.042 3.958 13 C 0.132 3.868 14 N -0.617 5.617 15 C 0.520 3.480 16 O -0.540 6.540 17 C -0.156 4.156 18 C -0.124 4.124 19 C 0.130 3.870 20 H 0.092 0.908 21 C 0.049 3.951 22 H 0.262 0.738 23 H 0.025 0.975 24 H 0.017 0.983 25 H 0.020 0.980 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.033 0.967 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.960 -15.416 -1.083 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.060 4.060 11 N -0.270 5.270 12 C -0.087 4.087 13 C 0.011 3.989 14 N -0.352 5.352 15 C 0.307 3.693 16 O -0.418 6.418 17 C -0.196 4.196 18 C -0.162 4.162 19 C 0.026 3.974 20 H 0.110 0.890 21 C -0.080 4.080 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.979 -15.488 -1.010 16.023 hybrid contribution 1.089 1.089 0.642 1.668 sum 5.067 -14.399 -0.368 15.269 Atomic orbital electron populations 1.69955 1.06027 1.26783 1.50389 1.24983 0.94829 0.99182 0.95198 0.86654 0.79584 0.83128 0.78595 1.20214 1.21240 1.20301 1.21131 0.92934 0.91024 1.51251 0.92853 1.19124 0.93971 0.90118 0.97795 1.22319 0.96735 0.87859 0.99053 1.61480 1.26722 1.02630 1.36213 1.22573 0.96846 0.98570 0.90675 1.22020 0.92335 0.83432 1.01098 1.48680 1.41731 1.15842 1.28914 1.20645 0.87307 0.81244 0.80064 1.90706 1.48681 1.65644 1.36789 1.22666 0.96645 1.02024 0.98272 1.22573 1.01055 0.95872 0.96742 1.21844 0.91308 0.94711 0.89564 0.89041 1.22507 0.93980 0.90563 1.00957 0.92878 0.95625 0.96464 0.96214 0.91843 0.87968 0.95240 0.90159 0.89404 0.88018 0.88459 0.89632 0.89091 0.94849 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.68 4.86 -27.88 -0.14 0.54 16 10 C 0.07 1.33 4.93 -3.82 -0.02 1.31 16 11 N -0.55 -9.23 4.53 -233.95 -1.06 -10.29 16 12 C 0.04 0.68 5.48 -3.48 -0.02 0.67 16 13 C 0.13 1.91 7.14 -2.98 -0.02 1.89 16 14 N -0.62 -8.49 2.97 -163.64 -0.49 -8.97 16 15 C 0.52 7.39 8.03 -11.14 -0.09 7.30 16 16 O -0.54 -9.76 17.87 5.55 0.10 -9.66 16 17 C -0.16 -1.49 6.96 -25.78 -0.18 -1.67 16 18 C -0.12 -0.99 6.83 -24.85 -0.17 -1.16 16 19 C 0.13 1.48 3.70 -67.13 -0.25 1.23 16 20 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 21 C 0.05 0.64 4.94 -3.64 -0.02 0.62 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.02 0.45 6.33 -51.93 -0.33 0.12 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 1.24 7.96 -51.93 -0.41 0.82 16 27 H 0.10 1.85 6.03 -51.93 -0.31 1.53 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.24 8.03 -51.93 -0.42 0.83 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.59 7.82 -51.93 -0.41 0.18 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 1.00 7.97 -51.93 -0.41 0.59 16 LS Contribution 290.41 15.07 4.38 4.38 Total: -1.00 -31.91 290.41 -8.30 -40.22 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -5.64 Total: -3.84 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.31 Total: -2.47 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.81 Total: -44.88 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.10 Total: -9.66 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.91 -8.30 -40.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168517627.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.703 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds