Wall clock time and date at job start Sun Mar 29 2020 21:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48497 * 109.47300 * 240.00036 * 3 2 1 5 5 H 1.48509 * 109.46717 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47515 * 119.99441 * 3 2 1 7 7 C 1.37880 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46969 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47015 * 180.02562 * 10 9 7 12 12 C 1.46725 * 111.05755 * 296.23865 * 11 10 9 13 13 C 1.53852 * 110.03107 * 171.75050 * 12 11 10 14 14 N 1.47625 * 106.15071 * 51.79562 * 13 12 11 15 15 C 1.33536 * 127.62325 * 123.73406 * 14 13 12 16 16 O 1.21283 * 125.38103 * 20.93692 * 15 14 13 17 17 C 1.51509 * 109.23568 * 200.93913 * 15 14 13 18 18 C 1.56180 * 104.30961 * 336.17514 * 17 15 14 19 19 C 1.47589 * 120.77585 * 308.08617 * 14 13 12 20 20 H 1.09002 * 110.33890 * 293.69645 * 19 14 13 21 21 C 1.47171 * 110.99716 * 169.99894 * 11 10 9 22 22 H 0.97002 * 119.99791 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47051 * 60.00037 * 9 7 2 24 24 H 1.09000 * 109.47400 * 299.99796 * 9 7 2 25 25 H 1.08994 * 109.47078 * 60.00113 * 10 9 7 26 26 H 1.09000 * 109.46938 * 300.00134 * 10 9 7 27 27 H 1.08996 * 109.37115 * 51.57658 * 12 11 10 28 28 H 1.09002 * 109.27761 * 291.86730 * 12 11 10 29 29 H 1.08998 * 110.11152 * 292.63912 * 13 12 11 30 30 H 1.09001 * 110.20866 * 171.00158 * 13 12 11 31 31 H 1.08997 * 110.48108 * 95.07950 * 17 15 14 32 32 H 1.08999 * 110.47314 * 217.56319 * 17 15 14 33 33 H 1.08998 * 111.01173 * 262.37159 * 18 17 15 34 34 H 1.08995 * 111.09346 * 138.66483 * 18 17 15 35 35 H 1.09002 * 109.68157 * 69.13942 * 21 11 10 36 36 H 1.08999 * 109.68119 * 308.62399 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9343 -0.0001 12 6 0.7224 -5.0885 1.2278 13 6 -0.1924 -6.3204 1.1155 14 7 0.6786 -7.4437 0.7172 15 6 0.8427 -8.6106 1.3454 16 8 0.0635 -9.0976 2.1370 17 6 2.1560 -9.2300 0.9131 18 6 2.4433 -8.5908 -0.4827 19 6 1.5752 -7.3273 -0.4494 20 1 0.9936 -7.2437 -1.3674 21 6 2.4188 -6.0675 -0.2387 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8719 -3.6044 -0.8894 27 1 0.1128 -4.1979 1.3802 28 1 1.3967 -5.2146 2.0749 29 1 -0.9568 -6.1517 0.3570 30 1 -0.6596 -6.5314 2.0775 31 1 2.9469 -8.9796 1.6201 32 1 2.0558 -10.3115 0.8219 33 1 2.1279 -9.2536 -1.2885 34 1 3.4969 -8.3315 -0.5860 35 1 3.0716 -6.2027 0.6237 36 1 3.0199 -5.8754 -1.1275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168517627.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:33 Heat of formation + Delta-G solvation = -50.535186 kcal Electronic energy + Delta-G solvation = -17226.423961 eV Core-core repulsion = 14516.322811 eV Total energy + Delta-G solvation = -2710.101150 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.76140 -39.05624 -37.06373 -35.15037 -34.09035 -31.93908 -30.28293 -28.92524 -26.36418 -24.85342 -23.84784 -22.05093 -21.66950 -20.17024 -18.58341 -17.58895 -17.00340 -16.74873 -16.54246 -16.25762 -15.70674 -15.65035 -14.92333 -14.72455 -14.30446 -14.10344 -13.91373 -13.38650 -13.28523 -12.95791 -12.79127 -12.57332 -12.45574 -12.30730 -12.09214 -11.83107 -11.76980 -11.33585 -11.24307 -10.84121 -10.51893 -9.80893 -9.16791 -8.19153 -6.30199 1.41542 1.44058 1.47405 1.51969 1.98354 2.40957 2.91498 3.14768 3.40053 3.64476 3.83025 3.92107 4.10398 4.15168 4.27371 4.30305 4.42777 4.52331 4.64691 4.68658 4.74062 4.84251 4.86726 4.99073 5.08330 5.11282 5.21148 5.45831 5.47756 5.66036 5.76817 6.04067 6.20430 6.28355 6.32160 6.87095 7.09456 7.39071 8.92569 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052980 B = 0.004880 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.372771 B = 5736.880351 C = 6057.100872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.034 3.966 10 C 0.084 3.916 11 N -0.556 5.556 12 C 0.050 3.950 13 C 0.137 3.863 14 N -0.623 5.623 15 C 0.508 3.492 16 O -0.589 6.589 17 C -0.146 4.146 18 C -0.108 4.108 19 C 0.129 3.871 20 H 0.093 0.907 21 C 0.049 3.951 22 H 0.263 0.737 23 H -0.006 1.006 24 H -0.006 1.006 25 H 0.018 0.982 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.039 0.961 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.323 -16.393 -1.992 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.004 4.004 10 C -0.043 4.043 11 N -0.281 5.281 12 C -0.079 4.079 13 C 0.015 3.985 14 N -0.356 5.356 15 C 0.298 3.702 16 O -0.470 6.470 17 C -0.186 4.186 18 C -0.146 4.146 19 C 0.026 3.974 20 H 0.111 0.889 21 C -0.079 4.079 22 H 0.072 0.928 23 H 0.013 0.987 24 H 0.012 0.988 25 H 0.036 0.964 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.057 0.943 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.374 -16.482 -1.943 17.778 hybrid contribution 0.306 1.378 0.922 1.686 sum 6.680 -15.104 -1.021 16.546 Atomic orbital electron populations 1.70098 1.07815 1.27792 1.51439 1.25930 0.95686 1.03234 0.94672 0.85521 0.78268 0.78187 0.79182 1.18998 1.21031 1.19319 1.21601 0.93558 0.92271 1.50890 0.92083 1.18962 0.94294 0.91966 0.95136 1.21935 0.95248 0.87749 0.99325 1.61384 1.27539 1.02845 1.36313 1.22415 0.96658 0.98258 0.90556 1.21829 0.92183 0.83325 1.01152 1.48856 1.41717 1.15417 1.29647 1.21560 0.88390 0.81164 0.79107 1.90675 1.50613 1.66850 1.38856 1.22703 0.93698 1.02844 0.99338 1.22639 1.01793 0.93836 0.96334 1.22052 0.91232 0.95667 0.88490 0.88930 1.22664 0.93776 0.89542 1.01960 0.92818 0.98717 0.98781 0.96422 0.90878 0.90753 0.95543 0.90222 0.89613 0.86629 0.86652 0.87369 0.86475 0.94304 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 2 C 0.00 0.16 5.46 84.66 0.46 0.63 16 3 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -30.37 9.11 25.60 0.23 -30.14 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.75 4.86 29.85 0.15 1.89 16 10 C 0.08 3.36 4.93 86.31 0.43 3.79 16 11 N -0.56 -18.56 4.53 -894.07 -4.05 -22.62 16 12 C 0.05 1.68 5.48 86.62 0.47 2.15 16 13 C 0.14 4.05 7.14 86.45 0.62 4.66 16 14 N -0.62 -16.43 2.97 -790.72 -2.35 -18.77 16 15 C 0.51 13.77 8.03 88.11 0.71 14.48 16 16 O -0.59 -21.27 17.87 -3.04 -0.05 -21.32 16 17 C -0.15 -2.27 6.96 31.21 0.22 -2.06 16 18 C -0.11 -1.24 6.83 31.81 0.22 -1.02 16 19 C 0.13 2.58 3.70 44.92 0.17 2.75 16 20 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 21 C 0.05 1.15 4.94 86.28 0.43 1.58 16 22 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 23 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 24 H -0.01 -0.34 6.33 -2.39 -0.02 -0.35 16 25 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 2.76 7.96 -2.39 -0.02 2.74 16 27 H 0.07 2.88 6.03 -2.39 -0.01 2.87 16 28 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.09 2.54 8.03 -2.39 -0.02 2.52 16 31 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.12 0.83 7.82 -2.39 -0.02 0.81 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 2.09 7.97 -2.39 -0.02 2.07 16 Total: -1.00 -70.92 290.41 1.00 -69.92 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.05 Total: 4.50 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 4.09 Total: -1.29 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -6.11 Total: -97.40 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.32 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -70.92 1.00 -69.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168517627.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.389 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds