Wall clock time and date at job start Sun Mar 29 2020 22:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 115.51788 * 2 1 4 4 C 1.52996 * 117.44659 * 214.64184 * 2 1 3 5 5 H 1.09003 * 119.52600 * 140.61413 * 4 2 1 6 6 C 1.54383 * 118.12655 * 344.02954 * 4 2 1 7 7 N 1.48559 * 104.59413 * 272.76218 * 6 4 2 8 8 C 1.46895 * 111.00113 * 159.04090 * 7 6 4 9 9 C 1.50703 * 109.47305 * 170.00447 * 8 7 6 10 10 O 1.21293 * 119.99930 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99683 * 180.02562 * 9 8 7 12 12 C 1.37100 * 119.99310 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00106 * 0.02562 * 12 11 9 14 14 C 1.38953 * 119.99811 * 179.97438 * 12 11 9 15 15 N 1.31411 * 119.99668 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00141 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46794 * 60.00077 * 16 14 12 18 18 H 1.48500 * 109.47040 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47104 * 300.00305 * 16 14 12 20 20 C 1.48568 * 104.21949 * 39.48403 * 7 6 4 21 21 C 1.53003 * 117.44337 * 145.41708 * 2 1 3 22 22 H 1.08998 * 119.52632 * 219.38895 * 21 2 1 23 23 H 1.08999 * 109.47265 * 281.29924 * 1 2 3 24 24 H 1.08998 * 109.47005 * 41.30632 * 1 2 3 25 25 H 1.09005 * 109.46779 * 161.29764 * 1 2 3 26 26 H 1.08997 * 109.47497 * 205.41530 * 3 2 1 27 27 H 1.09004 * 109.47179 * 325.41756 * 3 2 1 28 28 H 1.08997 * 109.47073 * 85.41327 * 3 2 1 29 29 H 1.09000 * 110.41300 * 31.54601 * 6 4 2 30 30 H 1.09010 * 110.40733 * 153.87364 * 6 4 2 31 31 H 1.09009 * 109.47197 * 290.00428 * 8 7 6 32 32 H 1.08998 * 109.47173 * 50.00381 * 8 7 6 33 33 H 0.96993 * 120.00547 * 359.97438 * 11 9 8 34 34 H 0.97001 * 119.99542 * 180.02562 * 15 14 12 35 35 H 1.08996 * 110.41244 * 201.73203 * 20 7 6 36 36 H 1.09006 * 110.40540 * 79.29346 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1891 1.3807 0.0000 4 6 2.2352 -1.1170 -0.7718 5 1 3.1334 -0.8892 -1.3459 6 6 1.4090 -2.3577 -1.1737 7 7 1.5033 -3.2659 -0.0018 8 6 0.4054 -4.2418 -0.0024 9 6 0.6650 -5.2907 1.0481 10 8 1.6664 -5.2314 1.7298 11 7 -0.2152 -6.2952 1.2293 12 6 0.0214 -7.2497 2.1846 13 1 0.9127 -7.1964 2.7922 14 6 -0.8862 -8.2851 2.3718 15 7 -1.9710 -8.3496 1.6328 16 14 -0.5637 -9.5860 3.6730 17 1 -0.4758 -8.9403 5.0074 18 1 -1.6741 -10.5721 3.6729 19 1 0.7148 -10.2795 3.3734 20 6 1.4090 -2.3591 1.1712 21 6 2.2352 -1.1179 0.7707 22 1 3.1332 -0.8907 1.3451 23 1 -0.3634 0.2013 1.0077 24 1 -0.3633 0.7720 -0.6783 25 1 -0.3633 -0.9735 -0.3295 26 1 3.1833 1.3088 -0.4410 27 1 1.5821 2.0731 -0.5833 28 1 2.2715 1.7440 1.0243 29 1 0.3711 -2.0802 -1.3571 30 1 1.8376 -2.8296 -2.0580 31 1 -0.5333 -3.7328 0.2166 32 1 0.3415 -4.7163 -0.9816 33 1 -1.0158 -6.3429 0.6839 34 1 -2.6047 -9.0722 1.7638 35 1 1.8385 -2.8331 2.0537 36 1 0.3709 -2.0818 1.3547 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172958199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:54 Heat of formation + Delta-G solvation = 0.272859 kcal Electronic energy + Delta-G solvation = -17042.469143 eV Core-core repulsion = 14334.571195 eV Total energy + Delta-G solvation = -2707.897948 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36063 -37.99283 -34.92981 -33.74095 -31.20405 -29.95515 -28.23787 -27.84303 -26.66772 -24.36433 -21.69129 -20.17854 -19.07901 -18.42997 -17.79584 -16.17015 -15.61761 -15.30131 -14.50014 -14.37590 -14.17617 -13.83554 -13.34777 -13.13030 -12.91009 -12.38140 -12.30068 -12.00579 -11.83218 -11.70570 -11.48530 -11.27106 -11.07365 -10.95310 -10.72487 -10.41437 -10.17729 -9.77524 -9.52542 -9.43747 -8.42245 -7.93956 -7.87855 -6.37684 -3.78292 3.22889 3.28001 3.32639 3.54390 3.95589 4.06790 4.27842 4.51885 4.69405 4.80914 4.98300 5.09142 5.27031 5.31518 5.37470 5.47835 5.51027 5.61494 5.73038 5.78765 5.78949 5.83744 5.88242 5.91275 6.00057 6.15097 6.21746 6.33044 6.34338 6.49938 7.15507 7.29266 7.58758 8.10517 8.66889 9.22548 9.59278 10.11887 10.80262 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.057409 B = 0.004706 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.612443 B = 5948.273866 C = 6049.336960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C -0.111 4.111 4 C -0.156 4.156 5 H 0.114 0.886 6 C 0.054 3.946 7 N -0.483 5.483 8 C 0.034 3.966 9 C 0.446 3.554 10 O -0.576 6.576 11 N -0.567 5.567 12 C -0.298 4.298 13 H 0.102 0.898 14 C 0.022 3.978 15 N -0.904 5.904 16 Si 0.930 3.070 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.066 3.934 21 C -0.152 4.152 22 H 0.114 0.886 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.391 0.609 34 H 0.271 0.729 35 H 0.097 0.903 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.431 15.394 -5.565 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.105 4.105 3 C -0.168 4.168 4 C -0.175 4.175 5 H 0.131 0.869 6 C -0.073 4.073 7 N -0.207 5.207 8 C -0.098 4.098 9 C 0.231 3.769 10 O -0.460 6.460 11 N -0.204 5.204 12 C -0.428 4.428 13 H 0.120 0.880 14 C -0.179 4.179 15 N -0.545 5.545 16 Si 0.757 3.243 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.061 4.061 21 C -0.170 4.170 22 H 0.132 0.868 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.442 14.933 -5.097 16.150 hybrid contribution -1.147 -0.398 0.224 1.235 sum 2.295 14.534 -4.873 15.500 Atomic orbital electron populations 1.21460 0.92683 1.02171 1.01862 1.21682 0.94761 0.91055 1.03046 1.21276 0.99933 0.93694 1.01899 1.23582 1.01708 0.96856 0.95367 0.86853 1.22716 0.98150 0.91306 0.95150 1.65283 1.42224 1.12167 1.01013 1.22054 0.92455 0.94860 1.00427 1.19707 0.85649 0.84364 0.87132 1.90509 1.28703 1.77040 1.49699 1.41852 1.21454 1.22851 1.34230 1.19650 1.07558 1.02604 1.12947 0.88016 1.25244 0.95339 0.98764 0.98601 1.69607 1.11093 1.33739 1.40103 0.85927 0.77817 0.79884 0.80636 1.19953 1.21007 1.19903 1.22648 0.97740 0.90079 0.95622 1.23596 1.01923 0.96877 0.94644 0.86829 0.92083 0.92265 0.91981 0.92403 0.92118 0.92079 0.93448 0.89891 0.93282 0.89324 0.77546 0.91889 0.88431 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 8.52 37.16 0.32 -1.03 16 2 C -0.11 -1.17 2.67 -154.51 -0.41 -1.59 16 3 C -0.11 -0.99 9.84 37.16 0.37 -0.62 16 4 C -0.16 -1.96 6.71 -89.24 -0.60 -2.55 16 5 H 0.11 1.29 8.13 -51.93 -0.42 0.87 16 6 C 0.05 0.75 5.91 -2.18 -0.01 0.74 16 7 N -0.48 -8.58 4.98 -231.39 -1.15 -9.73 16 8 C 0.03 0.63 5.32 -4.98 -0.03 0.61 16 9 C 0.45 10.89 7.63 -10.98 -0.08 10.81 16 10 O -0.58 -16.07 14.80 5.55 0.08 -15.99 16 11 N -0.57 -14.70 5.29 -10.96 -0.06 -14.76 16 12 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 13 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 16 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 C 0.07 1.12 5.39 -2.18 -0.01 1.11 16 21 C -0.15 -2.07 6.81 -89.24 -0.61 -2.68 16 22 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 25 H 0.06 0.73 4.92 -51.93 -0.26 0.47 16 26 H 0.06 0.49 7.96 -51.93 -0.41 0.07 16 27 H 0.06 0.47 8.01 -51.93 -0.42 0.06 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.61 5.80 -51.93 -0.30 0.31 16 30 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 31 H 0.05 0.84 7.77 -51.92 -0.40 0.43 16 32 H 0.09 1.50 8.08 -51.93 -0.42 1.08 16 33 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 34 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.10 1.93 7.24 -51.93 -0.38 1.55 16 36 H 0.04 0.68 6.36 -51.93 -0.33 0.34 16 LS Contribution 291.21 15.07 4.39 4.39 Total: -1.00 -31.17 291.21 -7.63 -38.80 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.28 Total: 8.47 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.31 Total: -3.31 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.49 Total: -48.68 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.08 Total: -15.99 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.17 -7.63 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172958199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.070 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds