Wall clock time and date at job start Sun Mar 29 2020 22:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 115.51788 * 2 1 4 4 C 1.52996 * 117.44659 * 214.64184 * 2 1 3 5 5 H 1.09003 * 119.52600 * 140.61413 * 4 2 1 6 6 C 1.54383 * 118.12655 * 344.02954 * 4 2 1 7 7 N 1.48559 * 104.59413 * 272.76218 * 6 4 2 8 8 C 1.46895 * 111.00113 * 159.04090 * 7 6 4 9 9 C 1.50703 * 109.47305 * 170.00447 * 8 7 6 10 10 O 1.21293 * 119.99930 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99683 * 180.02562 * 9 8 7 12 12 C 1.37100 * 119.99310 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00106 * 0.02562 * 12 11 9 14 14 C 1.38953 * 119.99811 * 179.97438 * 12 11 9 15 15 N 1.31411 * 119.99668 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00141 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46794 * 60.00077 * 16 14 12 18 18 H 1.48500 * 109.47040 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47104 * 300.00305 * 16 14 12 20 20 C 1.48568 * 104.21949 * 39.48403 * 7 6 4 21 21 C 1.53003 * 117.44337 * 145.41708 * 2 1 3 22 22 H 1.08998 * 119.52632 * 219.38895 * 21 2 1 23 23 H 1.08999 * 109.47265 * 281.29924 * 1 2 3 24 24 H 1.08998 * 109.47005 * 41.30632 * 1 2 3 25 25 H 1.09005 * 109.46779 * 161.29764 * 1 2 3 26 26 H 1.08997 * 109.47497 * 205.41530 * 3 2 1 27 27 H 1.09004 * 109.47179 * 325.41756 * 3 2 1 28 28 H 1.08997 * 109.47073 * 85.41327 * 3 2 1 29 29 H 1.09000 * 110.41300 * 31.54601 * 6 4 2 30 30 H 1.09010 * 110.40733 * 153.87364 * 6 4 2 31 31 H 1.09009 * 109.47197 * 290.00428 * 8 7 6 32 32 H 1.08998 * 109.47173 * 50.00381 * 8 7 6 33 33 H 0.96993 * 120.00547 * 359.97438 * 11 9 8 34 34 H 0.97001 * 119.99542 * 180.02562 * 15 14 12 35 35 H 1.08996 * 110.41244 * 201.73203 * 20 7 6 36 36 H 1.09006 * 110.40540 * 79.29346 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1891 1.3807 0.0000 4 6 2.2352 -1.1170 -0.7718 5 1 3.1334 -0.8892 -1.3459 6 6 1.4090 -2.3577 -1.1737 7 7 1.5033 -3.2659 -0.0018 8 6 0.4054 -4.2418 -0.0024 9 6 0.6650 -5.2907 1.0481 10 8 1.6664 -5.2314 1.7298 11 7 -0.2152 -6.2952 1.2293 12 6 0.0214 -7.2497 2.1846 13 1 0.9127 -7.1964 2.7922 14 6 -0.8862 -8.2851 2.3718 15 7 -1.9710 -8.3496 1.6328 16 14 -0.5637 -9.5860 3.6730 17 1 -0.4758 -8.9403 5.0074 18 1 -1.6741 -10.5721 3.6729 19 1 0.7148 -10.2795 3.3734 20 6 1.4090 -2.3591 1.1712 21 6 2.2352 -1.1179 0.7707 22 1 3.1332 -0.8907 1.3451 23 1 -0.3634 0.2013 1.0077 24 1 -0.3633 0.7720 -0.6783 25 1 -0.3633 -0.9735 -0.3295 26 1 3.1833 1.3088 -0.4410 27 1 1.5821 2.0731 -0.5833 28 1 2.2715 1.7440 1.0243 29 1 0.3711 -2.0802 -1.3571 30 1 1.8376 -2.8296 -2.0580 31 1 -0.5333 -3.7328 0.2166 32 1 0.3415 -4.7163 -0.9816 33 1 -1.0158 -6.3429 0.6839 34 1 -2.6047 -9.0722 1.7638 35 1 1.8385 -2.8331 2.0537 36 1 0.3709 -2.0818 1.3547 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172958199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:54 Heat of formation + Delta-G solvation = -21.530069 kcal Electronic energy + Delta-G solvation = -17043.414589 eV Core-core repulsion = 14334.571195 eV Total energy + Delta-G solvation = -2708.843393 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.50718 -39.87908 -36.34912 -35.67241 -33.28274 -31.09484 -29.41106 -28.76525 -28.07492 -26.19917 -23.03403 -21.33314 -20.90200 -19.87929 -19.37545 -17.76869 -17.00425 -16.73156 -16.33494 -15.95834 -15.56388 -15.15874 -14.69435 -14.49204 -14.27478 -13.65893 -13.48549 -13.20635 -13.13469 -13.01183 -12.86812 -12.63929 -12.50638 -12.44018 -12.14849 -12.12840 -11.80202 -11.49593 -10.79170 -10.47376 -10.32275 -10.01836 -9.30144 -8.46959 -5.95959 1.39286 1.40760 1.52030 2.04396 2.28023 2.56518 2.80701 3.19316 3.35581 3.51589 3.70117 3.90174 4.12462 4.16000 4.24595 4.26848 4.39856 4.49237 4.56864 4.61283 4.72381 4.77960 4.92985 4.97835 5.05519 5.09103 5.19261 5.22632 5.31506 5.39812 5.49466 5.84184 5.88651 6.08161 6.60365 7.12282 7.55319 8.11857 8.70430 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.057409 B = 0.004706 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.612443 B = 5948.273866 C = 6049.336960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.110 4.110 4 C -0.153 4.153 5 H 0.129 0.871 6 C 0.054 3.946 7 N -0.509 5.509 8 C 0.047 3.953 9 C 0.441 3.559 10 O -0.617 6.617 11 N -0.574 5.574 12 C -0.335 4.335 13 H 0.077 0.923 14 C -0.012 4.012 15 N -0.921 5.921 16 Si 0.993 3.007 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.272 1.272 20 C 0.069 3.931 21 C -0.172 4.172 22 H 0.114 0.886 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.396 0.604 34 H 0.278 0.722 35 H 0.055 0.945 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 16.611 -6.624 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.083 4.083 3 C -0.167 4.167 4 C -0.172 4.172 5 H 0.147 0.853 6 C -0.073 4.073 7 N -0.234 5.234 8 C -0.085 4.085 9 C 0.229 3.771 10 O -0.503 6.503 11 N -0.212 5.212 12 C -0.465 4.465 13 H 0.095 0.905 14 C -0.211 4.211 15 N -0.562 5.562 16 Si 0.817 3.183 17 H -0.197 1.197 18 H -0.193 1.193 19 H -0.197 1.197 20 C -0.059 4.059 21 C -0.191 4.191 22 H 0.132 0.868 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.129 0.871 33 H 0.230 0.770 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.937 16.166 -6.184 17.556 hybrid contribution -0.985 -0.750 0.542 1.352 sum 1.952 15.416 -5.642 16.532 Atomic orbital electron populations 1.21507 0.92249 1.02292 1.02402 1.21825 0.95111 0.91418 0.99975 1.21320 1.00410 0.92268 1.02662 1.23702 1.02339 0.96992 0.94148 0.85338 1.22790 0.99526 0.91218 0.93729 1.65218 1.42082 1.13309 1.02769 1.21901 0.93716 0.93785 0.99059 1.20747 0.84429 0.84590 0.87373 1.90479 1.30338 1.78022 1.51473 1.41916 1.21997 1.23129 1.34149 1.19625 1.07753 1.04608 1.14473 0.90472 1.26035 0.94754 1.00066 1.00293 1.69668 1.11379 1.34360 1.40767 0.84991 0.78075 0.77362 0.77910 1.19720 1.19298 1.19740 1.22467 0.98091 0.91134 0.94167 1.23501 1.02440 0.97450 0.95695 0.86801 0.92156 0.90066 0.93117 0.91731 0.90377 0.91641 0.91962 0.88929 0.91325 0.87139 0.77021 0.91254 0.92674 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.52 71.98 0.61 -1.80 16 2 C -0.08 -1.65 2.67 -52.18 -0.14 -1.79 16 3 C -0.11 -1.59 9.84 71.98 0.71 -0.88 16 4 C -0.15 -3.49 6.71 -9.90 -0.07 -3.56 16 5 H 0.13 2.55 8.13 -2.39 -0.02 2.53 16 6 C 0.05 1.39 5.91 86.45 0.51 1.90 16 7 N -0.51 -17.95 4.98 -886.00 -4.41 -22.36 16 8 C 0.05 1.74 5.32 85.56 0.46 2.19 16 9 C 0.44 22.12 7.63 87.66 0.67 22.79 16 10 O -0.62 -35.97 14.80 -3.07 -0.05 -36.02 16 11 N -0.57 -30.52 5.29 -306.97 -1.62 -32.14 16 12 C -0.34 -19.55 9.68 84.04 0.81 -18.74 16 13 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 14 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 15 N -0.92 -50.45 13.05 21.66 0.28 -50.17 16 16 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 C 0.07 2.37 5.39 86.45 0.47 2.83 16 21 C -0.17 -4.57 6.81 -9.90 -0.07 -4.64 16 22 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 23 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.08 1.19 8.04 -2.39 -0.02 1.17 16 25 H 0.05 1.07 4.92 -2.38 -0.01 1.06 16 26 H 0.06 0.87 7.96 -2.39 -0.02 0.85 16 27 H 0.08 0.90 8.01 -2.39 -0.02 0.88 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.44 5.80 -2.39 -0.01 1.42 16 30 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.07 2.27 7.77 -2.38 -0.02 2.25 16 32 H 0.11 3.59 8.08 -2.39 -0.02 3.57 16 33 H 0.40 19.89 7.90 -92.71 -0.73 19.15 16 34 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.05 2.32 7.24 -2.39 -0.02 2.31 16 36 H 0.04 1.44 6.36 -2.38 -0.02 1.42 16 Total: -1.00 -68.42 291.21 1.01 -67.41 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.35 Total: 29.45 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 4.43 Total: -1.87 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -5.75 Total: -104.68 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.05 Total: -36.02 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -68.42 1.01 -67.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172958199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.882 kcal (2) G-P(sol) polarization free energy of solvation -68.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds