Wall clock time and date at job start Sun Mar 29 2020 22:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 110.28907 * 2 1 4 4 C 1.54260 * 110.32489 * 237.87074 * 2 1 3 5 5 C 1.54386 * 105.05779 * 241.00389 * 4 2 1 6 6 N 1.48553 * 104.59660 * 336.14807 * 5 4 2 7 7 C 1.46899 * 111.00149 * 159.03965 * 6 5 4 8 8 C 1.52999 * 109.46893 * 69.87381 * 7 6 5 9 9 H 1.08992 * 109.47188 * 55.00323 * 8 7 6 10 10 C 1.47204 * 109.47104 * 295.00043 * 8 7 6 11 11 N 5.40017 * 124.66229 * 196.60456 * 2 1 3 12 12 C 1.53006 * 109.46811 * 175.00079 * 8 7 6 13 13 C 1.50699 * 109.46866 * 184.99981 * 12 8 7 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 8 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 8 16 16 N 1.31513 * 120.00305 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99832 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46901 * 89.99815 * 17 15 13 19 19 H 1.48488 * 109.47487 * 210.00255 * 17 15 13 20 20 H 1.48503 * 109.47026 * 330.00635 * 17 15 13 21 21 C 1.48569 * 104.22233 * 39.48203 * 6 5 4 22 22 H 1.09000 * 109.47198 * 180.67079 * 1 2 3 23 23 H 1.08992 * 109.47521 * 300.67631 * 1 2 3 24 24 H 1.09009 * 109.46850 * 60.67441 * 1 2 3 25 25 H 0.96703 * 113.99563 * 299.32834 * 3 2 1 26 26 H 1.08998 * 110.32219 * 122.11163 * 4 2 1 27 27 H 1.09002 * 110.41158 * 359.94100 * 4 2 1 28 28 H 1.08998 * 110.41054 * 217.36360 * 5 4 2 29 29 H 1.09003 * 110.40887 * 94.92819 * 5 4 2 30 30 H 1.09003 * 109.47265 * 309.87681 * 7 6 5 31 31 H 1.08995 * 109.47286 * 189.87533 * 7 6 5 32 32 H 1.08993 * 109.46955 * 305.00200 * 12 8 7 33 33 H 1.09000 * 109.47050 * 65.00029 * 12 8 7 34 34 H 0.97002 * 120.00008 * 179.97438 * 16 15 13 35 35 H 1.08999 * 110.40803 * 79.29654 * 21 6 5 36 36 H 1.09002 * 110.41017 * 201.73502 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0255 1.3403 0.0000 4 6 2.0658 -0.7693 -1.2250 5 6 2.8828 -1.9401 -0.6375 6 7 3.2720 -1.4807 0.7206 7 6 3.6118 -2.6193 1.5843 8 6 4.9263 -3.2434 1.1118 9 1 5.7008 -2.4773 1.0780 10 6 4.7428 -3.8152 -0.2322 11 7 4.6013 -4.2565 -1.2693 12 6 5.3444 -4.3488 2.0836 13 6 6.6981 -4.8798 1.6881 14 1 7.2090 -4.4702 0.8292 15 6 7.2841 -5.8892 2.4220 16 7 8.4653 -6.3530 2.0765 17 14 6.4002 -6.5982 3.9072 18 1 5.5516 -7.7394 3.4799 19 1 7.3993 -7.0686 4.8998 20 1 5.5469 -5.5500 4.5223 21 6 2.0682 -0.7706 1.2246 22 1 -0.3633 -1.0276 0.0120 23 1 -0.3634 0.5242 0.8838 24 1 -0.3633 0.5034 -0.8961 25 1 1.7560 1.8592 -0.7702 26 1 2.7068 -0.1246 -1.8262 27 1 1.2399 -1.1485 -1.8268 28 1 3.7689 -2.1274 -1.2439 29 1 2.2682 -2.8381 -0.5734 30 1 2.8172 -3.3638 1.5335 31 1 3.7219 -2.2751 2.6126 32 1 5.3940 -3.9441 3.0945 33 1 4.6135 -5.1567 2.0511 34 1 8.8776 -7.0629 2.5931 35 1 1.3263 -1.4856 1.5801 36 1 2.3412 -0.0774 2.0203 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177071719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:39 Heat of formation + Delta-G solvation = -22.959373 kcal Electronic energy + Delta-G solvation = -17055.279801 eV Core-core repulsion = 14346.374428 eV Total energy + Delta-G solvation = -2708.905373 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.81752 -37.28438 -35.40575 -33.92904 -32.40985 -31.03935 -29.61037 -27.62728 -25.44485 -23.44258 -21.50487 -21.06644 -20.34093 -17.21732 -16.89188 -16.73543 -15.79183 -14.96249 -14.74229 -14.36715 -14.01432 -13.82155 -13.48834 -12.99170 -12.83759 -12.54737 -12.47299 -12.29372 -12.11055 -11.87816 -11.55789 -11.26578 -11.15671 -10.94493 -10.81962 -10.77468 -10.28536 -10.07332 -9.95135 -9.74043 -9.32390 -8.61162 -8.43866 -6.09970 -4.10618 3.27000 3.34600 3.35170 3.53372 3.58334 3.95478 3.99615 4.38655 4.41679 4.54671 4.71482 4.78729 5.06900 5.15325 5.24366 5.27089 5.40026 5.48296 5.57455 5.64109 5.68055 5.77711 5.82224 5.94192 5.98560 6.06356 6.17755 6.36293 6.80826 6.95795 7.01534 7.14520 7.53887 7.64097 8.34526 8.43275 8.93682 9.49772 11.03186 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042482 B = 0.005383 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.940261 B = 5199.982016 C = 5500.965814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.125 3.875 3 O -0.549 6.549 4 C -0.151 4.151 5 C 0.026 3.974 6 N -0.505 5.505 7 C 0.049 3.951 8 C 0.019 3.981 9 H 0.117 0.883 10 C 0.246 3.754 11 N -0.473 5.473 12 C -0.004 4.004 13 C -0.528 4.528 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.262 1.262 21 C 0.045 3.955 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.373 0.627 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.018 0.982 34 H 0.264 0.736 35 H 0.056 0.944 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.437 12.857 -1.106 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.084 3.916 3 O -0.355 6.355 4 C -0.189 4.189 5 C -0.102 4.102 6 N -0.228 5.228 7 C -0.080 4.080 8 C -0.003 4.003 9 H 0.134 0.866 10 C -0.071 4.071 11 N -0.150 5.150 12 C -0.043 4.043 13 C -0.565 4.565 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.083 4.083 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.220 0.780 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.114 0.886 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.756 12.193 -2.058 20.028 hybrid contribution -1.150 -0.869 0.614 1.567 sum -16.906 11.324 -1.444 20.399 Atomic orbital electron populations 1.22470 0.95313 1.02766 1.02591 1.21896 0.91762 0.82877 0.95076 1.86615 1.77022 1.23327 1.48486 1.23108 0.99865 0.98205 0.97745 1.23357 0.99510 0.95807 0.91561 1.65478 1.32193 1.23154 1.02009 1.22464 0.96354 0.91275 0.97944 1.19040 0.97455 0.98879 0.84947 0.86552 1.29033 0.91788 0.91854 0.94377 1.81044 1.10223 1.10624 1.13082 1.19639 0.97795 0.92558 0.94312 1.21029 1.01038 1.19740 1.14738 0.90771 1.24987 0.94676 0.96077 0.97342 1.69906 1.15675 1.27860 1.40076 0.86815 0.79775 0.79887 0.83061 1.20332 1.21219 1.18687 1.23070 0.91795 0.96767 0.96690 0.91538 0.91584 0.92146 0.78041 0.90145 0.90983 0.89231 0.93759 0.94019 0.88605 0.94247 0.96324 0.92564 0.92544 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 8.59 37.16 0.32 -1.04 16 2 C 0.13 1.29 1.44 -89.24 -0.13 1.16 16 3 O -0.55 -5.89 12.96 -35.23 -0.46 -6.35 16 4 C -0.15 -1.67 6.44 -25.35 -0.16 -1.83 16 5 C 0.03 0.36 4.72 -2.18 -0.01 0.35 16 6 N -0.50 -7.10 5.37 -229.97 -1.24 -8.34 16 7 C 0.05 0.71 4.49 -3.82 -0.02 0.69 16 8 C 0.02 0.34 2.42 -93.40 -0.23 0.12 16 9 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 10 C 0.25 5.00 10.65 -20.76 -0.22 4.78 16 11 N -0.47 -10.29 17.69 42.15 0.75 -9.54 16 12 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 13 C -0.53 -14.35 9.15 -34.44 -0.32 -14.66 16 14 H 0.07 2.22 7.84 -52.48 -0.41 1.81 16 15 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 16 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 17 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 21 C 0.04 0.52 5.78 -2.18 -0.01 0.51 16 22 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.37 2.46 9.09 45.56 0.41 2.88 16 26 H 0.08 0.89 7.98 -51.93 -0.41 0.47 16 27 H 0.07 0.69 7.72 -51.93 -0.40 0.29 16 28 H 0.09 1.46 5.80 -51.93 -0.30 1.16 16 29 H 0.04 0.64 7.72 -51.93 -0.40 0.24 16 30 H 0.04 0.59 7.88 -51.93 -0.41 0.18 16 31 H 0.10 1.24 8.13 -51.93 -0.42 0.81 16 32 H 0.04 0.80 7.20 -51.93 -0.37 0.43 16 33 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.06 0.59 7.71 -51.93 -0.40 0.19 16 36 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 LS Contribution 294.40 15.07 4.44 4.44 Total: -1.00 -31.93 294.40 -6.16 -38.09 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.79 Total: 0.30 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.97 Total: -8.19 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.28 Total: -44.35 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.46 Total: -6.35 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.93 -6.16 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177071719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.129 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds