Wall clock time and date at job start Sun Mar 29 2020 22:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 110.28907 * 2 1 4 4 C 1.54260 * 110.32489 * 237.87074 * 2 1 3 5 5 C 1.54386 * 105.05779 * 241.00389 * 4 2 1 6 6 N 1.48553 * 104.59660 * 336.14807 * 5 4 2 7 7 C 1.46899 * 111.00149 * 159.03965 * 6 5 4 8 8 C 1.52999 * 109.46893 * 69.87381 * 7 6 5 9 9 H 1.08992 * 109.47188 * 55.00323 * 8 7 6 10 10 C 1.47204 * 109.47104 * 295.00043 * 8 7 6 11 11 N 5.40017 * 124.66229 * 196.60456 * 2 1 3 12 12 C 1.53006 * 109.46811 * 175.00079 * 8 7 6 13 13 C 1.50699 * 109.46866 * 184.99981 * 12 8 7 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 8 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 8 16 16 N 1.31513 * 120.00305 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99832 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46901 * 89.99815 * 17 15 13 19 19 H 1.48488 * 109.47487 * 210.00255 * 17 15 13 20 20 H 1.48503 * 109.47026 * 330.00635 * 17 15 13 21 21 C 1.48569 * 104.22233 * 39.48203 * 6 5 4 22 22 H 1.09000 * 109.47198 * 180.67079 * 1 2 3 23 23 H 1.08992 * 109.47521 * 300.67631 * 1 2 3 24 24 H 1.09009 * 109.46850 * 60.67441 * 1 2 3 25 25 H 0.96703 * 113.99563 * 299.32834 * 3 2 1 26 26 H 1.08998 * 110.32219 * 122.11163 * 4 2 1 27 27 H 1.09002 * 110.41158 * 359.94100 * 4 2 1 28 28 H 1.08998 * 110.41054 * 217.36360 * 5 4 2 29 29 H 1.09003 * 110.40887 * 94.92819 * 5 4 2 30 30 H 1.09003 * 109.47265 * 309.87681 * 7 6 5 31 31 H 1.08995 * 109.47286 * 189.87533 * 7 6 5 32 32 H 1.08993 * 109.46955 * 305.00200 * 12 8 7 33 33 H 1.09000 * 109.47050 * 65.00029 * 12 8 7 34 34 H 0.97002 * 120.00008 * 179.97438 * 16 15 13 35 35 H 1.08999 * 110.40803 * 79.29654 * 21 6 5 36 36 H 1.09002 * 110.41017 * 201.73502 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0255 1.3403 0.0000 4 6 2.0658 -0.7693 -1.2250 5 6 2.8828 -1.9401 -0.6375 6 7 3.2720 -1.4807 0.7206 7 6 3.6118 -2.6193 1.5843 8 6 4.9263 -3.2434 1.1118 9 1 5.7008 -2.4773 1.0780 10 6 4.7428 -3.8152 -0.2322 11 7 4.6013 -4.2565 -1.2693 12 6 5.3444 -4.3488 2.0836 13 6 6.6981 -4.8798 1.6881 14 1 7.2090 -4.4702 0.8292 15 6 7.2841 -5.8892 2.4220 16 7 8.4653 -6.3530 2.0765 17 14 6.4002 -6.5982 3.9072 18 1 5.5516 -7.7394 3.4799 19 1 7.3993 -7.0686 4.8998 20 1 5.5469 -5.5500 4.5223 21 6 2.0682 -0.7706 1.2246 22 1 -0.3633 -1.0276 0.0120 23 1 -0.3634 0.5242 0.8838 24 1 -0.3633 0.5034 -0.8961 25 1 1.7560 1.8592 -0.7702 26 1 2.7068 -0.1246 -1.8262 27 1 1.2399 -1.1485 -1.8268 28 1 3.7689 -2.1274 -1.2439 29 1 2.2682 -2.8381 -0.5734 30 1 2.8172 -3.3638 1.5335 31 1 3.7219 -2.2751 2.6126 32 1 5.3940 -3.9441 3.0945 33 1 4.6135 -5.1567 2.0511 34 1 8.8776 -7.0629 2.5931 35 1 1.3263 -1.4856 1.5801 36 1 2.3412 -0.0774 2.0203 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177071719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:38 Heat of formation + Delta-G solvation = -48.105919 kcal Electronic energy + Delta-G solvation = -17056.370237 eV Core-core repulsion = 14346.374428 eV Total energy + Delta-G solvation = -2709.995809 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78557 -38.56951 -36.61588 -35.62685 -34.10018 -32.22491 -30.53827 -29.09517 -26.57975 -24.64404 -23.32781 -22.13996 -21.18310 -18.89955 -18.46030 -17.88263 -16.92362 -16.17057 -16.01849 -15.62445 -15.27475 -14.90103 -14.77203 -14.51292 -14.17719 -13.95277 -13.62203 -13.60495 -13.28046 -13.10979 -12.87714 -12.59061 -12.41029 -12.23851 -12.06766 -11.84841 -11.72581 -11.69307 -11.40478 -11.25449 -10.86205 -10.74221 -9.48099 -8.25158 -6.31280 1.43101 1.44581 1.55965 1.91577 1.94553 2.40881 2.93526 3.10470 3.20973 3.26202 3.60327 3.66039 4.01176 4.04548 4.19405 4.34413 4.43687 4.50956 4.65959 4.71156 4.76824 4.80666 4.82340 4.88533 4.97986 5.06343 5.14113 5.23114 5.26801 5.42789 5.62140 5.81803 5.98662 6.25568 6.72121 6.78584 6.95489 7.33170 8.91965 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042482 B = 0.005383 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.940261 B = 5199.982016 C = 5500.965814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.128 3.872 3 O -0.567 6.567 4 C -0.146 4.146 5 C 0.025 3.975 6 N -0.519 5.519 7 C 0.058 3.942 8 C 0.023 3.977 9 H 0.113 0.887 10 C 0.253 3.747 11 N -0.505 5.505 12 C -0.001 4.001 13 C -0.533 4.533 14 H 0.026 0.974 15 C 0.003 3.997 16 N -0.955 5.955 17 Si 0.949 3.051 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.222 1.222 21 C 0.041 3.959 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.389 0.611 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.265 0.735 35 H 0.073 0.927 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.355 13.895 0.668 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.087 3.913 3 O -0.375 6.375 4 C -0.185 4.185 5 C -0.104 4.104 6 N -0.243 5.243 7 C -0.072 4.072 8 C 0.001 3.999 9 H 0.131 0.869 10 C -0.063 4.063 11 N -0.183 5.183 12 C -0.040 4.040 13 C -0.571 4.571 14 H 0.044 0.956 15 C -0.194 4.194 16 N -0.595 5.595 17 Si 0.772 3.228 18 H -0.201 1.201 19 H -0.215 1.215 20 H -0.144 1.144 21 C -0.086 4.086 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.239 0.761 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.139 0.861 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.703 13.272 -0.300 22.936 hybrid contribution -0.157 -1.128 -0.056 1.141 sum -18.861 12.144 -0.356 22.435 Atomic orbital electron populations 1.22405 0.93087 1.03323 1.03635 1.21886 0.93261 0.82468 0.93712 1.86569 1.77577 1.23633 1.49761 1.23106 0.99923 0.97124 0.98309 1.23261 0.98534 0.96910 0.91677 1.65406 1.34017 1.22944 1.01945 1.22386 0.94090 0.91727 0.98960 1.19077 0.99865 0.97832 0.83079 0.86909 1.29555 0.90800 0.91189 0.94753 1.81026 1.11532 1.11647 1.14080 1.19581 0.94498 0.93680 0.96207 1.21391 1.03284 1.19405 1.12995 0.95565 1.26057 0.95413 0.96657 1.01230 1.70092 1.18108 1.29129 1.42214 0.85678 0.78744 0.79851 0.78534 1.20124 1.21477 1.14429 1.23184 0.91155 0.96996 0.97290 0.91170 0.91094 0.90645 0.76098 0.90541 0.89321 0.92261 0.94358 0.93041 0.86133 0.91562 0.95507 0.92617 0.90847 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 8.59 71.98 0.62 -1.42 16 2 C 0.13 2.29 1.44 -9.90 -0.01 2.27 16 3 O -0.57 -10.81 12.96 -148.98 -1.93 -12.74 16 4 C -0.15 -2.98 6.44 31.49 0.20 -2.77 16 5 C 0.02 0.67 4.72 86.45 0.41 1.08 16 6 N -0.52 -13.60 5.37 -881.48 -4.73 -18.34 16 7 C 0.06 1.52 4.49 86.30 0.39 1.90 16 8 C 0.02 0.83 2.42 -12.60 -0.03 0.80 16 9 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 10 C 0.25 10.38 10.65 89.44 0.95 11.33 16 11 N -0.51 -22.49 17.69 20.01 0.35 -22.14 16 12 C 0.00 -0.03 3.49 29.85 0.10 0.08 16 13 C -0.53 -29.35 9.15 25.60 0.23 -29.12 16 14 H 0.03 1.64 7.84 -2.91 -0.02 1.62 16 15 C 0.00 0.17 5.47 84.65 0.46 0.63 16 16 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 17 Si 0.95 41.68 27.47 68.60 1.88 43.57 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 19 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.22 -8.26 6.54 99.48 0.65 -7.61 16 21 C 0.04 0.84 5.78 86.45 0.50 1.34 16 22 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 23 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.39 4.21 9.09 -74.06 -0.67 3.54 16 26 H 0.08 1.60 7.98 -2.39 -0.02 1.58 16 27 H 0.09 1.49 7.72 -2.39 -0.02 1.47 16 28 H 0.06 1.96 5.80 -2.39 -0.01 1.95 16 29 H 0.04 1.07 7.72 -2.39 -0.02 1.05 16 30 H 0.05 1.28 7.88 -2.39 -0.02 1.26 16 31 H 0.12 2.60 8.13 -2.39 -0.02 2.58 16 32 H 0.07 2.43 7.20 -2.39 -0.02 2.41 16 33 H 0.03 1.08 7.57 -2.39 -0.02 1.06 16 34 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.07 1.25 7.71 -2.39 -0.02 1.24 16 36 H 0.09 1.93 8.08 -2.39 -0.02 1.91 16 Total: -1.00 -71.17 294.40 0.04 -71.14 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.34 Total: 11.91 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 3.82 Total: -13.88 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -4.08 Total: -99.99 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -1.93 Total: -12.74 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.57 kcal Total: -71.17 0.04 -71.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177071719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.030 kcal (2) G-P(sol) polarization free energy of solvation -71.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds