Wall clock time and date at job start Sun Mar 29 2020 22:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42910 * 110.36593 * 2 1 4 4 C 1.54257 * 110.32776 * 122.17775 * 2 1 3 5 5 C 1.54381 * 105.14978 * 118.84533 * 4 2 1 6 6 N 1.48833 * 104.46643 * 23.88131 * 5 4 2 7 7 C 1.46897 * 110.97300 * 200.94630 * 6 5 4 8 8 C 1.53002 * 109.47030 * 285.42204 * 7 6 5 9 9 H 1.08994 * 109.47483 * 55.00078 * 8 7 6 10 10 C 1.47200 * 109.46734 * 294.99632 * 8 7 6 11 11 N 5.70560 * 157.71706 * 230.34736 * 2 1 3 12 12 C 1.53001 * 109.46637 * 175.00056 * 8 7 6 13 13 C 1.50702 * 109.46868 * 184.99652 * 12 8 7 14 14 H 1.08002 * 119.99959 * 0.02562 * 13 12 8 15 15 C 1.37881 * 120.00215 * 180.02562 * 13 12 8 16 16 N 1.31513 * 120.00113 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99585 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47390 * 90.00436 * 17 15 13 19 19 H 1.48509 * 109.46930 * 209.99927 * 17 15 13 20 20 H 1.48499 * 109.47680 * 330.00061 * 17 15 13 21 21 C 1.48564 * 104.23345 * 320.50078 * 6 5 4 22 22 H 1.08999 * 109.46787 * 299.27112 * 1 2 3 23 23 H 1.08998 * 109.47221 * 59.27474 * 1 2 3 24 24 H 1.08996 * 109.46887 * 179.27531 * 1 2 3 25 25 H 0.96699 * 114.00154 * 60.72701 * 3 2 1 26 26 H 1.09002 * 110.32715 * 237.79589 * 4 2 1 27 27 H 1.08998 * 110.32251 * 359.90115 * 4 2 1 28 28 H 1.09000 * 110.41095 * 142.68340 * 5 4 2 29 29 H 1.08999 * 110.41612 * 265.13091 * 5 4 2 30 30 H 1.09000 * 109.46943 * 45.41718 * 7 6 5 31 31 H 1.08998 * 109.46919 * 165.41895 * 7 6 5 32 32 H 1.08997 * 109.47627 * 304.99489 * 12 8 7 33 33 H 1.09001 * 109.46964 * 65.00123 * 12 8 7 34 34 H 0.96998 * 120.00194 * 179.97438 * 16 15 13 35 35 H 1.09001 * 110.40797 * 280.72597 * 21 6 5 36 36 H 1.09005 * 110.40897 * 158.28739 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0274 1.3398 0.0000 4 6 2.0659 -0.7703 1.2243 5 6 2.8802 -1.9436 0.6380 6 7 3.2695 -1.4828 -0.7226 7 6 3.6070 -2.6216 -1.5869 8 6 4.9773 -3.1745 -1.1900 9 1 4.9763 -3.4202 -0.1281 10 6 6.0114 -2.1620 -1.4585 11 7 6.8095 -1.3806 -1.6657 12 6 5.2739 -4.4351 -2.0048 13 6 6.5655 -5.0484 -1.5287 14 1 7.1192 -4.5857 -0.7251 15 6 7.0405 -6.2004 -2.1191 16 7 8.1674 -6.7359 -1.7034 17 14 6.0826 -7.0010 -3.5086 18 1 6.5367 -6.4441 -4.8082 19 1 6.3161 -8.4675 -3.4899 20 1 4.6335 -6.7282 -3.3324 21 6 2.0662 -0.7709 -1.2253 22 1 -0.3633 0.5025 0.8965 23 1 -0.3633 0.5250 -0.8834 24 1 -0.3633 -1.0276 -0.0130 25 1 1.7593 1.8588 0.7706 26 1 2.7082 -0.1266 1.8253 27 1 1.2389 -1.1470 1.8262 28 1 3.7657 -2.1324 1.2449 29 1 2.2636 -2.8401 0.5745 30 1 2.8536 -3.4008 -1.4718 31 1 3.6346 -2.2934 -2.6259 32 1 4.4623 -5.1510 -1.8752 33 1 5.3629 -4.1735 -3.0592 34 1 8.5014 -7.5465 -2.1184 35 1 1.3230 -1.4848 -1.5803 36 1 2.3394 -0.0778 -2.0210 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177071733.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:41 Heat of formation + Delta-G solvation = -28.553779 kcal Electronic energy + Delta-G solvation = -16948.431494 eV Core-core repulsion = 14239.283530 eV Total energy + Delta-G solvation = -2709.147964 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.73369 -37.07915 -35.50422 -33.72228 -32.40010 -31.01348 -29.67529 -27.59951 -25.49116 -23.34127 -21.46970 -21.10438 -20.41521 -17.18974 -16.87986 -16.54540 -15.74368 -15.07673 -14.76316 -14.36101 -14.03361 -13.71484 -13.22829 -13.16087 -12.88547 -12.56253 -12.39820 -12.20706 -11.93095 -11.70072 -11.44979 -11.34069 -11.28755 -11.02706 -10.86162 -10.70752 -10.27895 -10.09962 -9.94311 -9.73568 -9.31467 -8.60894 -8.40812 -6.09656 -4.10166 3.27263 3.34441 3.35088 3.73948 3.83316 3.95956 4.00591 4.38870 4.40916 4.53152 4.76221 4.87064 5.05073 5.14579 5.25187 5.27075 5.38397 5.49611 5.57846 5.62643 5.67526 5.77544 5.80377 5.86497 5.95369 6.02983 6.22333 6.29846 6.83976 6.95222 7.03817 7.12999 7.54886 7.64757 8.42202 8.60707 8.94340 9.50149 11.03536 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038883 B = 0.005356 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.934005 B = 5226.337330 C = 5485.549684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.124 3.876 3 O -0.550 6.550 4 C -0.151 4.151 5 C 0.030 3.970 6 N -0.508 5.508 7 C 0.048 3.952 8 C 0.025 3.975 9 H 0.104 0.896 10 C 0.253 3.747 11 N -0.471 5.471 12 C -0.006 4.006 13 C -0.527 4.527 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.263 1.263 21 C 0.045 3.955 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.372 0.628 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.021 0.979 34 H 0.264 0.736 35 H 0.057 0.943 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.992 9.542 4.537 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.083 3.917 3 O -0.355 6.355 4 C -0.190 4.190 5 C -0.097 4.097 6 N -0.232 5.232 7 C -0.082 4.082 8 C 0.003 3.997 9 H 0.122 0.878 10 C -0.065 4.065 11 N -0.147 5.147 12 C -0.045 4.045 13 C -0.565 4.565 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.188 1.188 21 C -0.083 4.083 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.219 0.781 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.912 10.706 3.633 20.343 hybrid contribution -1.558 -1.305 -0.130 2.037 sum -18.470 9.401 3.504 21.019 Atomic orbital electron populations 1.22468 0.95295 1.02775 1.02563 1.21902 0.91733 0.82934 0.95116 1.86643 1.76987 1.23434 1.48409 1.23096 0.99890 0.98286 0.97694 1.23202 0.99307 0.95934 0.91300 1.65513 1.32299 1.23192 1.02153 1.22454 0.96191 0.91775 0.97749 1.18891 0.86765 0.90893 1.03172 0.87815 1.28679 0.93172 0.92275 0.92347 1.80993 1.11154 1.12755 1.09802 1.19652 0.98719 0.90853 0.95229 1.21030 1.05377 1.09627 1.20447 0.90768 1.24988 0.94700 0.96739 0.96664 1.69905 1.20427 1.21030 1.42172 0.86818 0.81067 0.78663 0.82978 1.20219 1.21270 1.18798 1.23054 0.91767 0.96741 0.96703 0.92166 0.91681 0.91440 0.78082 0.90182 0.90853 0.89463 0.93148 0.92514 0.90154 0.94584 0.96086 0.92573 0.92442 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 8.58 37.16 0.32 -0.95 16 2 C 0.12 1.24 1.44 -89.24 -0.13 1.11 16 3 O -0.55 -6.11 12.96 -35.23 -0.46 -6.57 16 4 C -0.15 -1.44 6.44 -25.35 -0.16 -1.60 16 5 C 0.03 0.35 5.92 -2.03 -0.01 0.34 16 6 N -0.51 -7.03 5.04 -229.73 -1.16 -8.19 16 7 C 0.05 0.69 4.19 -3.82 -0.02 0.67 16 8 C 0.02 0.45 2.26 -93.41 -0.21 0.24 16 9 H 0.10 1.82 7.28 -51.93 -0.38 1.44 16 10 C 0.25 5.46 13.67 -20.76 -0.28 5.18 16 11 N -0.47 -11.19 18.54 42.16 0.78 -10.41 16 12 C -0.01 -0.12 3.49 -27.88 -0.10 -0.22 16 13 C -0.53 -14.34 9.15 -34.44 -0.32 -14.65 16 14 H 0.07 2.22 7.84 -52.49 -0.41 1.81 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 17 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 21 C 0.05 0.53 5.74 -2.18 -0.01 0.52 16 22 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 25 H 0.37 2.54 9.09 45.56 0.41 2.95 16 26 H 0.08 0.79 7.98 -51.93 -0.41 0.37 16 27 H 0.07 0.55 7.71 -51.93 -0.40 0.15 16 28 H 0.09 1.07 7.74 -51.93 -0.40 0.67 16 29 H 0.05 0.52 7.76 -51.93 -0.40 0.12 16 30 H 0.06 0.71 7.77 -51.93 -0.40 0.31 16 31 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 32 H 0.04 0.73 7.20 -51.93 -0.37 0.36 16 33 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 35 H 0.06 0.57 7.70 -51.93 -0.40 0.17 16 36 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 LS Contribution 299.61 15.07 4.52 4.52 Total: -1.00 -33.18 299.61 -6.07 -39.25 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.84 Total: -0.76 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.02 Total: -7.45 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.40 Total: -45.05 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.46 Total: -6.57 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.18 -6.07 -39.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177071733.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.699 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds